mRNA_L-elsbetiae_contig10351.383.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10351.383.1
Unique NamemRNA_L-elsbetiae_contig10351.383.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10351.383.1 vs. uniprot
Match: A0A6H5JS48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS48_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.700e-9
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:    2 VTKKLHGSKGMGKRLYKRAKNSTPALMDAAARELEALEGRLASKLLASSDNAP 160
            VTKKLHGSKGMGKRLY+R ++S PA MDA A EL+ LE RLA+KLLA+SD  P
Sbjct:   82 VTKKLHGSKGMGKRLYRRVQDSNPASMDAVAHELKVLEERLAAKLLANSDGWP 134
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10351.383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JS48_9PHAE1.700e-971.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10351contigL-elsbetiae_contig10351:1099..3234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_004290.1
Exons2
Model size1687
Cds size1656
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10351.383.1prot_L-elsbetiae_contig10351.383.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10351 1130..3234 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815262.6911423-UTR-L-elsbetiae_contig10351:1098..11291622815262.6911423-UTR-L-elsbetiae_contig10351:1098..1129Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10351 1099..1129 +
1691682803.94209-UTR-L-elsbetiae_contig10351:1098..11291691682803.94209-UTR-L-elsbetiae_contig10351:1098..1129Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10351 1099..1129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815262.7029526-CDS-L-elsbetiae_contig10351:1129..26951622815262.7029526-CDS-L-elsbetiae_contig10351:1129..2695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10351 1130..2695 +
1691682803.9506679-CDS-L-elsbetiae_contig10351:1129..26951691682803.9506679-CDS-L-elsbetiae_contig10351:1129..2695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10351 1130..2695 +
1622815262.7170844-CDS-L-elsbetiae_contig10351:3144..32341622815262.7170844-CDS-L-elsbetiae_contig10351:3144..3234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10351 3145..3234 +
1691682803.9583044-CDS-L-elsbetiae_contig10351:3144..32341691682803.9583044-CDS-L-elsbetiae_contig10351:3144..3234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10351 3145..3234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10351.383.1

>prot_L-elsbetiae_contig10351.383.1 ID=prot_L-elsbetiae_contig10351.383.1|Name=mRNA_L-elsbetiae_contig10351.383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=552bp
MGKRLYKRAKNSTPALMDAAARELEALEGRLASKLLASSDNAPVATYPGA
VGYAAASLERPAAAAAAATAGAAAAAAGAAKAVAATAGAATAGAATAVAQ
VRRHRPRVKSAGGGAAVGARGSATGGAQSAHRRPRIYSRDDPAETLPSSP
RQTRLSAHRKQQDRQQWPAGAAAAAVARRERTAGELGPTAPCSLPDSSAK
MSGGDDDDGDFGGDNFDGGAEGGGLGGSKRKSTSAFFPTAEAPAEGNNDS
SSGDCSRTDRSLGGGGGGTAGFLTACGFTGYRSDSMLPLLLSSSLQGEDD
GSCLESDDALQHPILPDVGPGLSPESEHRDNGDVRRGNGGGGGGGVGGGG
GGGGHPISLEAAASGYYSMALMPPPPREQNDRQSLTNLLPGTDKAAAAAA
AVPSSAVRGSSPTEGQQQRRQAPTTTAAALDYDAAYLRAGRGVSGVGPAA
ATAAVRGVKVIADRDDNRDASHGDMTSAQATAAAAAALVHGVSPEVTTGA
ARVAVSSMVIPMGMDMDDDWLQLPWSARPGAAGVSSAAAAASAAALVATS
ST
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mRNA from alignment at L-elsbetiae_contig10351:1099..3234+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10351.383.1 ID=mRNA_L-elsbetiae_contig10351.383.1|Name=mRNA_L-elsbetiae_contig10351.383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2136bp|location=Sequence derived from alignment at L-elsbetiae_contig10351:1099..3234+ (Laminarionema elsbetiae ELsaHSoW15)
AGTCACCAAGAAACTCCACGGGAGCAAGGGCATGGGCAAGCGCCTCTACA
AGAGGGCCAAGAACTCCACCCCGGCGCTGATGGACGCCGCCGCCCGCGAG
CTGGAAGCGCTCGAGGGGCGCCTCGCGAGCAAGCTCCTCGCGAGCTCCGA
CAACGCGCCGGTGGCGACGTATCCCGGGGCTGTCGGGTACGCTGCAGCGT
CCTTGGAGCGACCGGCAGCTGCAGCAGCAGCTGCGACAGCAGGGGCAGCA
GCAGCAGCAGCAGGAGCCGCGAAAGCAGTAGCCGCGACAGCAGGAGCCGC
GACAGCAGGTGCCGCGACAGCAGTCGCACAGGTGCGGCGCCATCGCCCTC
GTGTAAAAAGTGCCGGCGGTGGTGCCGCTGTGGGAGCGAGGGGCAGCGCC
ACCGGCGGCGCCCAATCCGCGCACCGTCGCCCTCGCATATACAGCCGCGA
CGACCCCGCAGAGACGCTGCCGTCGTCGCCGCGCCAGACTCGGCTCTCGG
CACACCGGAAGCAGCAAGATCGGCAGCAATGGCCTGCAGGTGCAGCGGCG
GCGGCGGTGGCAAGAAGGGAAAGAACTGCAGGAGAGCTTGGCCCCACGGC
TCCCTGTTCTCTTCCCGACTCGAGCGCGAAGATGAGTGGCGGTGATGACG
ACGACGGCGACTTCGGCGGCGACAACTTCGACGGCGGCGCGGAGGGCGGC
GGCCTCGGTGGGTCCAAGCGCAAATCCACCTCGGCATTTTTCCCCACAGC
CGAAGCGCCCGCAGAAGGAAATAACGACAGCAGCAGCGGCGACTGCTCTC
GCACCGACCGCTCTCTCGGCGGCGGCGGCGGCGGCACCGCCGGCTTCTTG
ACCGCGTGCGGTTTCACCGGGTACCGCAGCGACAGCATGCTTCCTCTCCT
GCTGAGCAGCAGCCTGCAAGGAGAGGACGACGGCTCTTGCTTGGAGAGCG
ACGATGCCCTCCAGCACCCGATCCTCCCCGACGTCGGGCCCGGCTTGTCG
CCGGAGTCCGAGCATCGGGACAATGGCGACGTCCGGCGTGGCAACGGCGG
TGGCGGTGGCGGTGGCGTTGGCGGCGGCGGCGGCGGCGGCGGCCACCCCA
TTTCACTTGAGGCCGCCGCCTCGGGCTACTACTCAATGGCCCTCATGCCG
CCGCCACCACGAGAGCAGAACGACAGGCAATCTTTGACGAATCTCTTGCC
AGGAACCGATAAAGCAGCAGCAGCAGCAGCAGCAGTACCTTCTTCCGCCG
TCCGGGGTTCTTCGCCGACGGAGGGGCAGCAGCAAAGGCGGCAGGCGCCC
ACGACGACCGCGGCGGCCCTGGATTACGACGCCGCGTATCTTCGTGCCGG
GAGAGGGGTGAGCGGCGTCGGGCCTGCCGCAGCGACCGCTGCGGTGAGGG
GCGTCAAGGTTATTGCCGACCGTGACGACAATCGTGATGCCAGTCACGGC
GACATGACGTCTGCGCAGGCGACGGCGGCGGCGGCGGCGGCGCTGGTGCA
CGGTGTGTCCCCGGAGGTGACGACAGGGGCGGCGAGGGTGGCTGTGTCTT
CGATGGTGATTCCCATGGGCATGGACATGGACGATGACTGGCTGCAGGTA
AGAACGGTGCCCACGAGAAGAAATGTCATCTTCGTTCTCTTCCCCCGCCA
AACTTGCGCCCTAACTTCATCGAGGGGTAAGCCAACTGTGTGACTCGGCA
GGTTATGGCGCAAAAGGCTTTATTTCGTCGGGAGATGCATCAATCAGACT
GGCCTGTTTCCCCCCCGTTTTTTTCGTGGGTGTCGCGTTCTTGCCAAGAC
CATGGCCCTTGGTTGTCAGAATGCCAAGGGAGCCAGAACTGCGATACTCC
TGTCGGTATCACTGCCTTTTGTCTTACATGGCCTTTCTTCTCTTGTGCAA
CGCCAATCGGTTCCTTCCATTGCAATCCAAATCGATGCTGTTTATACACT
TCGTATGGTGCATGCTTCTTTCTCTCGTTGACCTTTTCCGCTAACATTTT
CTCTTCCGTTCGTGGTTTTTTTCCCTTCCTTCTGCGACGCAAACAGCTGC
CGTGGTCGGCAAGACCAGGCGCAGCAGGGGTATCGTCGGCGGCGGCTGCT
GCTTCTGCTGCTGCTTTGGTGGCGACAAGCTCGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10351:1099..3234+

>mRNA_L-elsbetiae_contig10351.383.1 ID=mRNA_L-elsbetiae_contig10351.383.1|Name=mRNA_L-elsbetiae_contig10351.383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3312bp|location=Sequence derived from alignment at L-elsbetiae_contig10351:1099..3234+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCAAGCGCCTCTACAAGAGGGCCAAGAACTCCACCCCGGCGCTGAT
GGACGCCGCCGCCCGCGAGCTGGAAGCGCTCGAGGGGCGCCTCGCGAGCA
AGCTCCTCGCGAGCTCCGACAACGCGCCGGTGGCGACGTATCCCGGGGCT
GTCGGGTACGCTGCAGCGTCCTTGGAGCGACCGGCAGCTGCAGCAGCAGC
TGCGACAGCAGGGGCAGCAGCAGCAGCAGCAGGAGCCGCGAAAGCAGTAG
CCGCGACAGCAGGAGCCGCGACAGCAGGTGCCGCGACAGCAGTCGCACAG
GTGCGGCGCCATCGCCCTCGTGTAAAAAGTGCCGGCGGTGGTGCCGCTGT
GGGAGCGAGGGGCAGCGCCACCGGCGGCGCCCAATCCGCGCACCGTCGCC
CTCGCATATACAGCCGCGACGACCCCGCAGAGACGCTGCCGTCGTCGCCG
CGCCAGACTCGGCTCTCGGCACACCGGAAGCAGCAAGATCGGCAGCAATG
GCCTGCAGGTGCAGCGGCGGCGGCGGTGGCAAGAAGGGAAAGAACTGCAG
GAGAGCTTGGCCCCACGGCTCCCTGTTCTCTTCCCGACTCGAGCGCGAAG
ATGAGTGGCGGTGATGACGACGACGGCGACTTCGGCGGCGACAACTTCGA
CGGCGGCGCGGAGGGCGGCGGCCTCGGTGGGTCCAAGCGCAAATCCACCT
CGGCATTTTTCCCCACAGCCGAAGCGCCCGCAGAAGGAAATAACGACAGC
AGCAGCGGCGACTGCTCTCGCACCGACCGCTCTCTCGGCGGCGGCGGCGG
CGGCACCGCCGGCTTCTTGACCGCGTGCGGTTTCACCGGGTACCGCAGCG
ACAGCATGCTTCCTCTCCTGCTGAGCAGCAGCCTGCAAGGAGAGGACGAC
GGCTCTTGCTTGGAGAGCGACGATGCCCTCCAGCACCCGATCCTCCCCGA
CGTCGGGCCCGGCTTGTCGCCGGAGTCCGAGCATCGGGACAATGGCGACG
TCCGGCGTGGCAACGGCGGTGGCGGTGGCGGTGGCGTTGGCGGCGGCGGC
GGCGGCGGCGGCCACCCCATTTCACTTGAGGCCGCCGCCTCGGGCTACTA
CTCAATGGCCCTCATGCCGCCGCCACCACGAGAGCAGAACGACAGGCAAT
CTTTGACGAATCTCTTGCCAGGAACCGATAAAGCAGCAGCAGCAGCAGCA
GCAGTACCTTCTTCCGCCGTCCGGGGTTCTTCGCCGACGGAGGGGCAGCA
GCAAAGGCGGCAGGCGCCCACGACGACCGCGGCGGCCCTGGATTACGACG
CCGCGTATCTTCGTGCCGGGAGAGGGGTGAGCGGCGTCGGGCCTGCCGCA
GCGACCGCTGCGGTGAGGGGCGTCAAGGTTATTGCCGACCGTGACGACAA
TCGTGATGCCAGTCACGGCGACATGACGTCTGCGCAGGCGACGGCGGCGG
CGGCGGCGGCGCTGGTGCACGGTGTGTCCCCGGAGGTGACGACAGGGGCG
GCGAGGGTGGCTGTGTCTTCGATGGTGATTCCCATGGGCATGGACATGGA
CGATGACTGGCTGCAGATGGGCAAGCGCCTCTACAAGAGGGCCAAGAACT
CCACCCCGGCGCTGATGGACGCCGCCGCCCGCGAGCTGGAAGCGCTCGAG
GGGCGCCTCGCGAGCAAGCTCCTCGCGAGCTCCGACAACGCGCCGGTGGC
GACGTATCCCGGGGCTGTCGGGTACGCTGCAGCGTCCTTGGAGCGACCGG
CAGCTGCAGCAGCAGCTGCGACAGCAGGGGCAGCAGCAGCAGCAGCAGGA
GCCGCGAAAGCAGTAGCCGCGACAGCAGGAGCCGCGACAGCAGGTGCCGC
GACAGCAGTCGCACAGGTGCGGCGCCATCGCCCTCGTGTAAAAAGTGCCG
GCGGTGGTGCCGCTGTGGGAGCGAGGGGCAGCGCCACCGGCGGCGCCCAA
TCCGCGCACCGTCGCCCTCGCATATACAGCCGCGACGACCCCGCAGAGAC
GCTGCCGTCGTCGCCGCGCCAGACTCGGCTCTCGGCACACCGGAAGCAGC
AAGATCGGCAGCAATGGCCTGCAGGTGCAGCGGCGGCGGCGGTGGCAAGA
AGGGAAAGAACTGCAGGAGAGCTTGGCCCCACGGCTCCCTGTTCTCTTCC
CGACTCGAGCGCGAAGATGAGTGGCGGTGATGACGACGACGGCGACTTCG
GCGGCGACAACTTCGACGGCGGCGCGGAGGGCGGCGGCCTCGGTGGGTCC
AAGCGCAAATCCACCTCGGCATTTTTCCCCACAGCCGAAGCGCCCGCAGA
AGGAAATAACGACAGCAGCAGCGGCGACTGCTCTCGCACCGACCGCTCTC
TCGGCGGCGGCGGCGGCGGCACCGCCGGCTTCTTGACCGCGTGCGGTTTC
ACCGGGTACCGCAGCGACAGCATGCTTCCTCTCCTGCTGAGCAGCAGCCT
GCAAGGAGAGGACGACGGCTCTTGCTTGGAGAGCGACGATGCCCTCCAGC
ACCCGATCCTCCCCGACGTCGGGCCCGGCTTGTCGCCGGAGTCCGAGCAT
CGGGACAATGGCGACGTCCGGCGTGGCAACGGCGGTGGCGGTGGCGGTGG
CGTTGGCGGCGGCGGCGGCGGCGGCGGCCACCCCATTTCACTTGAGGCCG
CCGCCTCGGGCTACTACTCAATGGCCCTCATGCCGCCGCCACCACGAGAG
CAGAACGACAGGCAATCTTTGACGAATCTCTTGCCAGGAACCGATAAAGC
AGCAGCAGCAGCAGCAGCAGTACCTTCTTCCGCCGTCCGGGGTTCTTCGC
CGACGGAGGGGCAGCAGCAAAGGCGGCAGGCGCCCACGACGACCGCGGCG
GCCCTGGATTACGACGCCGCGTATCTTCGTGCCGGGAGAGGGGTGAGCGG
CGTCGGGCCTGCCGCAGCGACCGCTGCGGTGAGGGGCGTCAAGGTTATTG
CCGACCGTGACGACAATCGTGATGCCAGTCACGGCGACATGACGTCTGCG
CAGGCGACGGCGGCGGCGGCGGCGGCGCTGGTGCACGGTGTGTCCCCGGA
GGTGACGACAGGGGCGGCGAGGGTGGCTGTGTCTTCGATGGTGATTCCCA
TGGGCATGGACATGGACGATGACTGGCTGCAGCTGCCGTGGTCGGCAAGA
CCAGGCGCAGCAGGGGTATCGTCGGCGGCGGCTGCTGCTTCTGCTGCTGC
TTTGGTGGCGACAAGCTCGACGCTGCCGTGGTCGGCAAGACCAGGCGCAG
CAGGGGTATCGTCGGCGGCGGCTGCTGCTTCTGCTGCTGCTTTGGTGGCG
ACAAGCTCGACG
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