mRNA_L-elsbetiae_contig10.38.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10.38.1
Unique NamemRNA_L-elsbetiae_contig10.38.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10.38.1 vs. uniprot
Match: PSBE_PHATC (Cytochrome b559 subunit alpha n=39 Tax=cellular organisms TaxID=131567 RepID=PSBE_PHATC)

HSP 1 Score: 173 bits (439), Expect = 1.530e-54
Identity = 80/84 (95.24%), Postives = 84/84 (100.00%), Query Frame = 2 
Query:   44 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTRGL 295
            MSGGSTGERPFSDIITSVRYWIIHSITIPSLF+SGWLF+STGLAYDVFGTPRPNEYFTQDRQQ+PLVNDRFSAKQELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFTQDRQQIPLVNDRFSAKQELEDLTKGL 84
[Close]
BLAST of mRNA_L-elsbetiae_contig10.38.1 vs. uniprot
Match: PSBE_THAPS (Cytochrome b559 subunit alpha n=117 Tax=Eukaryota TaxID=2759 RepID=PSBE_THAPS)

HSP 1 Score: 173 bits (438), Expect = 2.170e-54
Identity = 81/84 (96.43%), Postives = 84/84 (100.00%), Query Frame = 2 
Query:   44 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTRGL 295
            MSGGSTGERPFSDIITSVRYWIIH+ITIPSLF+SGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHTITIPSLFVSGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGL 84
[Close]
BLAST of mRNA_L-elsbetiae_contig10.38.1 vs. uniprot
Match: A0A3G1I9C5_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Batrachospermaceae TaxID=31371 RepID=A0A3G1I9C5_9FLOR)

HSP 1 Score: 171 bits (432), Expect = 4.820e-53
Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = 2 
Query:   14 ILL*NGDSFKMSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTRGL 295
            +LL   +   MSGGSTGERPFSDIITS+RYW+IHSITIPSLFI+GWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELE+LT+G+
Sbjct:   23 LLLHFQEVDSMSGGSTGERPFSDIITSIRYWVIHSITIPSLFIAGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEELTKGI 116
[Close]
BLAST of mRNA_L-elsbetiae_contig10.38.1 vs. uniprot
Match: PSBE_GUITH (Cytochrome b559 subunit alpha n=32 Tax=Eukaryota TaxID=2759 RepID=PSBE_GUITH)

HSP 1 Score: 169 bits (428), Expect = 7.290e-53
Identity = 76/84 (90.48%), Postives = 84/84 (100.00%), Query Frame = 2 
Query:   44 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTRGL 295
            MSGGSTGERPFSDIITS+RYWIIHSITIP+LF++GWLF+STGLAYD+FGTPRPNEYFTQ+RQQVPLVNDRFSAKQELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSIRYWIIHSITIPALFVAGWLFVSTGLAYDIFGTPRPNEYFTQERQQVPLVNDRFSAKQELEDLTKGL 84
[Close]
BLAST of mRNA_L-elsbetiae_contig10.38.1 vs. uniprot
Match: A0A6M3WCX6_COROI (Cytochrome b559 subunit alpha n=87 Tax=Florideophyceae TaxID=2806 RepID=A0A6M3WCX6_COROI)

HSP 1 Score: 170 bits (430), Expect = 7.330e-53
Identity = 76/84 (90.48%), Postives = 84/84 (100.00%), Query Frame = 2 
Query:   44 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTRGL 295
            MSGGSTGERPFSDIITS+RYW+IHSITIP+LF++GWLF+STGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLT+G+
Sbjct:   24 MSGGSTGERPFSDIITSIRYWVIHSITIPALFVAGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGI 107
[Close]
BLAST of mRNA_L-elsbetiae_contig10.38.1 vs. uniprot
Match: A0A6B9TNT0_SARFS (Cytochrome b559 subunit alpha n=16 Tax=Fucales TaxID=3009 RepID=A0A6B9TNT0_SARFS)

HSP 1 Score: 168 bits (425), Expect = 2.090e-52
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 2 
Query:   44 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTRGL 295
            MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLF+STGLAYDVFGTPRPNEYFTQDRQQVPLVNDRF+  QE+ED TRGL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFNVTQEIEDFTRGL 84
[Close]
BLAST of mRNA_L-elsbetiae_contig10.38.1 vs. uniprot
Match: PSBE_EMIHU (Cytochrome b559 subunit alpha n=17 Tax=cellular organisms TaxID=131567 RepID=PSBE_EMIHU)

HSP 1 Score: 166 bits (421), Expect = 8.520e-52
Identity = 76/84 (90.48%), Postives = 83/84 (98.81%), Query Frame = 2 
Query:   44 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTRGL 295
            MSGGSTGERPFSDIITS+RYWIIHSITIPSLF++G+LF+STGLAYD FGTPRPNEYFTQDRQQ+PLVNDRFSAKQELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSIRYWIIHSITIPSLFVAGFLFVSTGLAYDAFGTPRPNEYFTQDRQQIPLVNDRFSAKQELEDLTKGL 84
[Close]
BLAST of mRNA_L-elsbetiae_contig10.38.1 vs. uniprot
Match: A0A1C9CFD7_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandiaceae TaxID=31478 RepID=A0A1C9CFD7_9FLOR)

HSP 1 Score: 166 bits (419), Expect = 1.830e-51
Identity = 75/84 (89.29%), Postives = 82/84 (97.62%), Query Frame = 2 
Query:   44 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTRGL 295
            MSGGSTGERPFSDIITSVRYW+IHSITIPSLFI+GWLF+STGLAYDVFGTPRP+EYFTQDRQQVPL+NDRFS KQELEDLT+ +
Sbjct:    1 MSGGSTGERPFSDIITSVRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPDEYFTQDRQQVPLINDRFSVKQELEDLTKSI 84
[Close]
BLAST of mRNA_L-elsbetiae_contig10.38.1 vs. uniprot
Match: A0A0D3M5E1_9STRA (Cytochrome b559 subunit alpha n=6 Tax=Eukaryota TaxID=2759 RepID=A0A0D3M5E1_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.370e-51
Identity = 75/81 (92.59%), Postives = 81/81 (100.00%), Query Frame = 2 
Query:   53 GSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTRGL 295
            GSTGERPFSDIITS+RYWIIHSITIPSLF+SGWLF+STGLAYDVFGTPRPNEYF+QDRQQVPLVNDRF+AKQELEDLT+GL
Sbjct:    3 GSTGERPFSDIITSIRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFSQDRQQVPLVNDRFNAKQELEDLTKGL 83
[Close]
BLAST of mRNA_L-elsbetiae_contig10.38.1 vs. uniprot
Match: M1JFG4_DIALT (Cytochrome b559 subunit alpha n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1JFG4_DIALT)

HSP 1 Score: 164 bits (414), Expect = 9.950e-51
Identity = 74/84 (88.10%), Postives = 81/84 (96.43%), Query Frame = 2 
Query:   44 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTRGL 295
            MSGGSTGERPF DIITS+RYWIIHSITIPSLF++GWLF++TGLAYD+FGTPRPNEYFT DRQQVPLVNDRFSAKQELEDLT+ L
Sbjct:    1 MSGGSTGERPFVDIITSIRYWIIHSITIPSLFVAGWLFVATGLAYDIFGTPRPNEYFTADRQQVPLVNDRFSAKQELEDLTKSL 84
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBE_PHATC1.530e-5495.24Cytochrome b559 subunit alpha n=39 Tax=cellular or... [more]
PSBE_THAPS2.170e-5496.43Cytochrome b559 subunit alpha n=117 Tax=Eukaryota ... [more]
A0A3G1I9C5_9FLOR4.820e-5385.11Cytochrome b559 subunit alpha n=3 Tax=Batrachosper... [more]
PSBE_GUITH7.290e-5390.48Cytochrome b559 subunit alpha n=32 Tax=Eukaryota T... [more]
A0A6M3WCX6_COROI7.330e-5390.48Cytochrome b559 subunit alpha n=87 Tax=Florideophy... [more]
A0A6B9TNT0_SARFS2.090e-5292.86Cytochrome b559 subunit alpha n=16 Tax=Fucales Tax... [more]
PSBE_EMIHU8.520e-5290.48Cytochrome b559 subunit alpha n=17 Tax=cellular or... [more]
A0A1C9CFD7_9FLOR1.830e-5189.29Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandi... [more]
A0A0D3M5E1_9STRA3.370e-5192.59Cytochrome b559 subunit alpha n=6 Tax=Eukaryota Ta... [more]
M1JFG4_DIALT9.950e-5188.10Cytochrome b559 subunit alpha n=2 Tax=Pavlovaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:73967..74301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue1.3e-41
Seed eggNOG ortholog2880.D1J7D5
Preferred namepsbE
KEGG koko:K02707,ko:K02713
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
Hectar predicted targeting categoryother localisation
EggNOG free text desc.photosynthetic electron transport chain
EggNOG OGs2CHYC@1,2S3QA@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size335
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.38.1prot_L-elsbetiae_contig10.38.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10 74010..74264 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815233.0370872-UTR-L-elsbetiae_contig10:73966..740091622815233.0370872-UTR-L-elsbetiae_contig10:73966..74009Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 73967..74009 +
1691682784.4343333-UTR-L-elsbetiae_contig10:73966..740091691682784.4343333-UTR-L-elsbetiae_contig10:73966..74009Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 73967..74009 +
1622815233.0694044-UTR-L-elsbetiae_contig10:74264..743011622815233.0694044-UTR-L-elsbetiae_contig10:74264..74301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 74265..74301 +
1691682784.460776-UTR-L-elsbetiae_contig10:74264..743011691682784.460776-UTR-L-elsbetiae_contig10:74264..74301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10 74265..74301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815233.0531373-CDS-L-elsbetiae_contig10:74009..742641622815233.0531373-CDS-L-elsbetiae_contig10:74009..74264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 74010..74264 +
1691682784.4512048-CDS-L-elsbetiae_contig10:74009..742641691682784.4512048-CDS-L-elsbetiae_contig10:74009..74264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 74010..74264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10.38.1

>prot_L-elsbetiae_contig10.38.1 ID=prot_L-elsbetiae_contig10.38.1|Name=mRNA_L-elsbetiae_contig10.38.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGT
PRPNEYFTQDRQQVPLVNDRFSAKQELEDLTRGL*
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mRNA from alignment at L-elsbetiae_contig10:73967..74301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10.38.1 ID=mRNA_L-elsbetiae_contig10.38.1|Name=mRNA_L-elsbetiae_contig10.38.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=335bp|location=Sequence derived from alignment at L-elsbetiae_contig10:73967..74301+ (Laminarionema elsbetiae ELsaHSoW15)
GCAAAGGTATAATATACTTTTATAAAATGGAGATAGTTTTAAAATGTCTG
GTGGTTCAACCGGAGAACGTCCTTTTTCTGATATTATAACAAGTGTACGT
TATTGGATTATTCATAGTATTACAATTCCTTCTCTATTTATTTCCGGTTG
GTTATTCATTAGTACTGGTTTAGCTTATGATGTTTTTGGAACTCCTAGAC
CTAATGAATATTTTACACAAGATAGACAACAAGTGCCATTAGTAAATGAT
AGGTTTAGTGCGAAACAAGAATTAGAAGATTTAACAAGAGGTTTATAACT
CTTATTTCTAATTTATTTTTTCTTTTCTAAGCGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10:73967..74301+

>mRNA_L-elsbetiae_contig10.38.1 ID=mRNA_L-elsbetiae_contig10.38.1|Name=mRNA_L-elsbetiae_contig10.38.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig10:73967..74301+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGGTGGTTCAACCGGAGAACGTCCTTTTTCTGATATTATAACAAG
TGTACGTTATTGGATTATTCATAGTATTACAATTCCTTCTCTATTTATTT
CCGGTTGGTTATTCATTAGTACTGGTTTAGCTTATGATGTTTTTGGAACT
CCTAGACCTAATGAATATTTTACACAAGATAGACAACAAGTGCCATTAGT
AAATGATAGGTTTAGTGCGAAACAAGAATTAGAAGATTTAACAAGAGGTT
TATAAATGTCTGGTGGTTCAACCGGAGAACGTCCTTTTTCTGATATTATA
ACAAGTGTACGTTATTGGATTATTCATAGTATTACAATTCCTTCTCTATT
TATTTCCGGTTGGTTATTCATTAGTACTGGTTTAGCTTATGATGTTTTTG
GAACTCCTAGACCTAATGAATATTTTACACAAGATAGACAACAAGTGCCA
TTAGTAAATGATAGGTTTAGTGCGAAACAAGAATTAGAAGATTTAACAAG
AGGTTTATAA
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