mRNA_L-elsbetiae_contig10346.379.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10346.379.1
Unique NamemRNA_L-elsbetiae_contig10346.379.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10346.379.1 vs. uniprot
Match: D8LJI6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 8.650e-15
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:  313 SMEKGCREDGCNRRPIYAYKGSTRAAFCARHRLAGMIDTRHPL 441
            S  +GC+EDGC+RRPIYAYKGS +AA+CARHRL GMIDTRHPL
Sbjct:  461 SSGRGCKEDGCDRRPIYAYKGSKKAAYCARHRLTGMIDTRHPL 503
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BLAST of mRNA_L-elsbetiae_contig10346.379.1 vs. uniprot
Match: D8LBU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU9_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.290e-13
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  280 RERSDPVPPGGSMEKGCREDGCNRRPIYAYKGSTRAAFCARHRLAGMIDTRHPLCKDEQCTRQPSF 477
            +E    V P G+    CR+ GC+RRPIYA+KG T+A  C  HR A M++ RHPLC+ E C RQPSF
Sbjct:  444 KETGTTVAPKGAQA--CRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPLCRHESCFRQPSF 507
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BLAST of mRNA_L-elsbetiae_contig10346.379.1 vs. uniprot
Match: A0A6H5K8Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.050e-8
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:  277 RRERSDPVPPGGSMEKGCREDGCNRRPIYAYKGSTRAAFCARHR 408
            RR  +   P   S  +GC+EDGC+RRPIYAYKGS +AA+CARHR
Sbjct:  531 RRAANAATPSAPSSGRGCKEDGCDRRPIYAYKGSKKAAYCARHR 574
[Close]
BLAST of mRNA_L-elsbetiae_contig10346.379.1 vs. uniprot
Match: A0A6H5KXM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM5_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.710e-6
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:  280 RERSDPVPPGGSMEKGCREDGCNRRPIYAYKGSTRAAFCARHRLAGMIDTRHPL 441
            +E    V P G+    CR+ GC+RRPIYA+KG T+A  C  HR A M++ RHPL
Sbjct:  602 KETGTTVAPKGAQA--CRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPL 653
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10346.379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJI6_ECTSI8.650e-1579.07EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LBU9_ECTSI3.290e-1353.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8Z0_9PHAE4.050e-861.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXM5_9PHAE1.710e-650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10346contigL-elsbetiae_contig10346:2332..4168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue6e-13
Seed eggNOG ortholog2880.D8LJI6
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size478
Cds size477
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10346.379.1prot_L-elsbetiae_contig10346.379.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10346 2333..4168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815262.1433625-CDS-L-elsbetiae_contig10346:2332..24021622815262.1433625-CDS-L-elsbetiae_contig10346:2332..2402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10346 2333..2402 -
1691682803.6516075-CDS-L-elsbetiae_contig10346:2332..24021691682803.6516075-CDS-L-elsbetiae_contig10346:2332..2402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10346 2333..2402 -
1622815262.1541138-CDS-L-elsbetiae_contig10346:3307..34241622815262.1541138-CDS-L-elsbetiae_contig10346:3307..3424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10346 3308..3424 -
1691682803.6613255-CDS-L-elsbetiae_contig10346:3307..34241691682803.6613255-CDS-L-elsbetiae_contig10346:3307..3424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10346 3308..3424 -
1622815262.1705823-CDS-L-elsbetiae_contig10346:3878..41681622815262.1705823-CDS-L-elsbetiae_contig10346:3878..4168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10346 3879..4168 -
1691682803.6698997-CDS-L-elsbetiae_contig10346:3878..41681691682803.6698997-CDS-L-elsbetiae_contig10346:3878..4168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10346 3879..4168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10346.379.1

>prot_L-elsbetiae_contig10346.379.1 ID=prot_L-elsbetiae_contig10346.379.1|Name=mRNA_L-elsbetiae_contig10346.379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
SDPGLYSATVPPLRAGPSGSSARPPPYPLLGLAGEAADEPAGGEGGGGRN
VSLGELRAGSAGADASAGAGAGAGAGAVAGAGAGAGAVEGAGRRERSDPV
PPGGSMEKGCREDGCNRRPIYAYKGSTRAAFCARHRLAGMIDTRHPLCKD
EQCTRQPSF
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mRNA from alignment at L-elsbetiae_contig10346:2332..4168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10346.379.1 ID=mRNA_L-elsbetiae_contig10346.379.1|Name=mRNA_L-elsbetiae_contig10346.379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1837bp|location=Sequence derived from alignment at L-elsbetiae_contig10346:2332..4168- (Laminarionema elsbetiae ELsaHSoW15)
AGCGACCCGGGACTGTACAGCGCCACCGTGCCACCGCTGCGTGCGGGCCC
CTCGGGCTCTTCTGCACGTCCGCCGCCGTACCCCTTGCTGGGGCTGGCGG
GGGAGGCGGCGGATGAACCGGCGGGAGGAGAAGGAGGAGGTGGCAGGAAT
GTGTCCCTCGGCGAGCTAAGGGCTGGTTCGGCTGGTGCTGATGCTAGTGC
TGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGTCGCTGGCGCTGGTGCTG
GTGCTGGTGCTGTGGAGGGGGCGGGGCGTAGAGAACGAAGGTGAACAATT
AAGGGTTGGCTGTAGTGTCTAGGGTAAGGGTTTCCGACCTCGCGGGAGAT
ATGTATTCAGCGGTCATCAACGCTGTAGGGCAGGAAGGGCGCAACGAAGG
AATCATTTTTTGCCGGCCACGTTTTTTTTCATCTATTTTTTTCTTCCCAT
TATTGGCTAATTCCTTCGTCTTCTGCCCCACTGGCTCCCTTCCTCCACTA
CGACTGGCTAGACGACCCAACCGGGGTCACACACGTATATATATATATAT
GTAGCCGCGACGATCTCTGGCAGCGTCTACCTAGCCTGTTCGAAGCAAAA
TAAAGGAACTGCCTGGCCGGCCAAATGATAAATAAAATACCCTGCAGGAC
AAGCCAAAACCGAAACCCTTCCTTTGTATCACCGTGCGTGTGCCCCTTCG
CCCGGCGATTTTTGACGTGTACGTACATACACGGGGCCAAAAAGCGACCC
CGTGCCCCCGGGTGGGTCCATGGAGAAGGGGTGCAGGGAGGACGGTTGCA
ACCGGCGCCCGATCTACGCCTACAAGGGGAGCACGAGGGCGGCCTTCTGC
GCGAGACACAGGCGAGCTTTGACTTGTACTCTTTCCTCCGAGGCCCCCTG
ATTTAATTAAAGTCCGCGTGAAGAGAAGTTCAGCTTATTTATTATTTATT
CTGTCACGACGCCATCGATCTTAATACATATCACGGCAATAGGAACGCAC
TTTCTTGTACAATGGTATCATGTACATTAGGGCGGTCGATTATCGTGCGA
GTGTTTGCAGTGATTGGCGGGACCCCCTGCTCTGGCTGGCCGAGGTGGTT
GGTTGTCTGCGCGGGCAGCGTGGTCAGATTGTGTTTTGCTGGTCGTTGTA
CGATGCGGCTCAGGACAACATGGCTGGCCGTGTGCTGTGGTTTCGGCGCG
TGCTTGCCTGCGGGAAACGGTTTGGTTGGCGCAGTGAGTTGCTGCCGAGA
CACAAAAACAAGACACTTCCTTATTTTGTAGCCACAAGCTAGATATGTAC
ATATCTATGAAGCTCGTTTTTCTTTTTTGGCGTGGTTGTAGGAACGGCGA
CGACGCGGTTTGCTGACGGAACGCAAGACTTCTTTATTAGCAGTCAGTAA
GGCTCATCTGCACCACGCCATAAACTTTTGAACGACACCACTGCGCGAAG
CAGGACGTGCCACCTGCCGCGATGCCCACCGATAAGAAATAACCCGGACA
CTAAAAAAGCTCTTGAAAAATGGCCCATAAAAATAAAGACCGGGCCATCT
ATCTGTAGACTAGATAGATATGCCCCACTACATTCCTTATTATTTCGTTT
GCCCTTCGACAAATGCAGATAGACCCAACAAGTTCACCCACTCATCCCAC
ACGCATAGACTATCATACTTGTTTTGTAATCGACGCCATGGAACGAAGAG
TTACGTACCACCTGCCGCGAATACATAGGAATTTCACGCCGATATTTAAC
GAAAATAAATTCACAGGCTGGCCGGCATGATCGACACGAGGCACCCGCTG
TGCAAGGACGAGCAGTGCACCCGGCAACCCAGCTTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10346:2332..4168-

>mRNA_L-elsbetiae_contig10346.379.1 ID=mRNA_L-elsbetiae_contig10346.379.1|Name=mRNA_L-elsbetiae_contig10346.379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig10346:2332..4168- (Laminarionema elsbetiae ELsaHSoW15)
AGCGACCCGGGACTGTACAGCGCCACCGTGCCACCGCTGCGTGCGGGCCC
CTCGGGCTCTTCTGCACGTCCGCCGCCGTACCCCTTGCTGGGGCTGGCGG
GGGAGGCGGCGGATGAACCGGCGGGAGGAGAAGGAGGAGGTGGCAGGAAT
GTGTCCCTCGGCGAGCTAAGGGCTGGTTCGGCTGGTGCTGATGCTAGTGC
TGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGTCGCTGGCGCTGGTGCTG
GTGCTGGTGCTGTGGAGGGGGCGGGGCGTAGAGAACGAAGAGCGACCCGG
GACTGTACAGCGCCACCGTGCCACCGCTGCGTGCGGGCCCCTCGGGCTCT
TCTGCACGTCCGCCGCCGTACCCCTTGCTGGGGCTGGCGGGGGAGGCGGC
GGATGAACCGGCGGGAGGAGAAGGAGGAGGTGGCAGGAATGTGTCCCTCG
GCGAGCTAAGGGCTGGTTCGGCTGGTGCTGATGCTAGTGCTGGTGCTGGT
GCTGGTGCTGGTGCTGGTGCTGTCGCTGGCGCTGGTGCTGGTGCTGGTGC
TGTGGAGGGGGCGGGGCGTAGAGAACGAAGCGACCCCGTGCCCCCGGGTG
GGTCCATGGAGAAGGGGTGCAGGGAGGACGGTTGCAACCGGCGCCCGATC
TACGCCTACAAGGGGAGCACGAGGGCGGCCTTCTGCGCGAGACACAGCGA
CCCCGTGCCCCCGGGTGGGTCCATGGAGAAGGGGTGCAGGGAGGACGGTT
GCAACCGGCGCCCGATCTACGCCTACAAGGGGAGCACGAGGGCGGCCTTC
TGCGCGAGACACAGGCTGGCCGGCATGATCGACACGAGGCACCCGCTGTG
CAAGGACGAGCAGTGCACCCGGCAACCCAGCTTCGCTGGCCGGCATGATC
GACACGAGGCACCCGCTGTGCAAGGACGAGCAGTGCACCCGGCAACCCAG
CTTC
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