mRNA_L-elsbetiae_contig10345.378.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10345.378.1
Unique NamemRNA_L-elsbetiae_contig10345.378.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10345.378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10345contigL-elsbetiae_contig10345:3809..4697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size889
Cds size618
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815262.0995822-CDS-L-elsbetiae_contig10345:3808..44261622815262.0995822-CDS-L-elsbetiae_contig10345:3808..4426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10345 3809..4426 +
1691682803.634063-CDS-L-elsbetiae_contig10345:3808..44261691682803.634063-CDS-L-elsbetiae_contig10345:3808..4426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10345 3809..4426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815262.1092117-UTR-L-elsbetiae_contig10345:4426..46971622815262.1092117-UTR-L-elsbetiae_contig10345:4426..4697Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10345 4427..4697 +
1691682803.6428168-UTR-L-elsbetiae_contig10345:4426..46971691682803.6428168-UTR-L-elsbetiae_contig10345:4426..4697Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10345 4427..4697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10345.378.1prot_L-elsbetiae_contig10345.378.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10345 3809..4426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10345.378.1

>prot_L-elsbetiae_contig10345.378.1 ID=prot_L-elsbetiae_contig10345.378.1|Name=mRNA_L-elsbetiae_contig10345.378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
MLLAKNIFHSSLSIYVWRRQLPPQPVHHIYNHPPPIRRPTTPSLTLRDKT
SPPASADTPTVVFAAPDCGSSLSKRPLTTRHGNSTSSVSAPCSACPLLST
KYPSVSAPPFFPLSLPGALASLYKELILHHLPRFRLLPPITPSWPRRPTE
PTPSFTFGSPRLLPRGVPRPLLLSTSRPALAPYQPALHPHYPLVCVRAQF
PVFLI*
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mRNA from alignment at L-elsbetiae_contig10345:3809..4697+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10345.378.1 ID=mRNA_L-elsbetiae_contig10345.378.1|Name=mRNA_L-elsbetiae_contig10345.378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=889bp|location=Sequence derived from alignment at L-elsbetiae_contig10345:3809..4697+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCTTGCAAAAAATATCTTCCACTCTTCTCTCAGCATCTATGTGTG
GCGCCGTCAACTTCCCCCCCAACCGGTCCACCACATCTACAATCACCCCC
CTCCCATTCGACGCCCCACCACCCCTTCATTAACACTGCGCGACAAAACT
TCCCCTCCTGCCTCTGCCGACACACCTACGGTTGTTTTTGCCGCACCTGA
TTGCGGCTCCAGTCTTTCCAAACGCCCTCTTACAACGCGCCACGGCAACT
CTACCTCCTCCGTATCCGCCCCATGTTCAGCGTGCCCGCTTCTATCTACG
AAATATCCCTCCGTCTCCGCCCCCCCCTTTTTCCCTCTTTCCCTCCCCGG
CGCCCTCGCCTCTCTGTACAAAGAGCTCATCCTCCACCACCTGCCCAGAT
TTCGGCTCCTCCCCCCTATCACTCCTTCCTGGCCCCGTCGGCCGACGGAG
CCCACACCCTCATTCACCTTCGGCTCCCCCCGGCTCCTGCCCCGCGGTGT
CCCTCGGCCTCTTCTTTTGTCCACTTCACGCCCTGCGCTGGCGCCCTATC
AACCCGCCCTGCACCCACACTACCCCCTTGTGTGCGTACGTGCACAATTT
CCCGTTTTCCTTATATAGTAGCCGCAAGCACCGTCCCGCACCAACCAAGC
GCCCTCCGCCCGCGTCTCATTCTCGATCTGCGCCTTCCAAGTAGCCGGCT
TGCGCGATGGCTTTCTATTTTCGAGCCTTCACAAGATACGTGCTTGCAGT
AGAGAGGCAACGCGACAAGCAATCTCCCAGCTATATCTCACCAGATACGC
CGAAACCGCCAAATAAAATAGCCATCGAGCAGTTTTCCCTGAGTCGAAGT
CCATTCATCAGGGCAGACCTTAGATGCCGGGCACCGACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10345:3809..4697+

>mRNA_L-elsbetiae_contig10345.378.1 ID=mRNA_L-elsbetiae_contig10345.378.1|Name=mRNA_L-elsbetiae_contig10345.378.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig10345:3809..4697+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCTTGCAAAAAATATCTTCCACTCTTCTCTCAGCATCTATGTGTG
GCGCCGTCAACTTCCCCCCCAACCGGTCCACCACATCTACAATCACCCCC
CTCCCATTCGACGCCCCACCACCCCTTCATTAACACTGCGCGACAAAACT
TCCCCTCCTGCCTCTGCCGACACACCTACGGTTGTTTTTGCCGCACCTGA
TTGCGGCTCCAGTCTTTCCAAACGCCCTCTTACAACGCGCCACGGCAACT
CTACCTCCTCCGTATCCGCCCCATGTTCAGCGTGCCCGCTTCTATCTACG
AAATATCCCTCCGTCTCCGCCCCCCCCTTTTTCCCTCTTTCCCTCCCCGG
CGCCCTCGCCTCTCTGTACAAAGAGCTCATCCTCCACCACCTGCCCAGAT
TTCGGCTCCTCCCCCCTATCACTCCTTCCTGGCCCCGTCGGCCGACGGAG
CCCACACCCTCATTCACCTTCGGCTCCCCCCGGCTCCTGCCCCGCGGTGT
CCCTCGGCCTCTTCTTTTGTCCACTTCACGCCCTGCGCTGGCGCCCTATC
AACCCGCCCTGCACCCACACTACCCCCTTGTGTGCGTACGTGCACAATTT
CCCGTTTTCCTTATATAGATGCTTCTTGCAAAAAATATCTTCCACTCTTC
TCTCAGCATCTATGTGTGGCGCCGTCAACTTCCCCCCCAACCGGTCCACC
ACATCTACAATCACCCCCCTCCCATTCGACGCCCCACCACCCCTTCATTA
ACACTGCGCGACAAAACTTCCCCTCCTGCCTCTGCCGACACACCTACGGT
TGTTTTTGCCGCACCTGATTGCGGCTCCAGTCTTTCCAAACGCCCTCTTA
CAACGCGCCACGGCAACTCTACCTCCTCCGTATCCGCCCCATGTTCAGCG
TGCCCGCTTCTATCTACGAAATATCCCTCCGTCTCCGCCCCCCCCTTTTT
CCCTCTTTCCCTCCCCGGCGCCCTCGCCTCTCTGTACAAAGAGCTCATCC
TCCACCACCTGCCCAGATTTCGGCTCCTCCCCCCTATCACTCCTTCCTGG
CCCCGTCGGCCGACGGAGCCCACACCCTCATTCACCTTCGGCTCCCCCCG
GCTCCTGCCCCGCGGTGTCCCTCGGCCTCTTCTTTTGTCCACTTCACGCC
CTGCGCTGGCGCCCTATCAACCCGCCCTGCACCCACACTACCCCCTTGTG
TGCGTACGTGCACAATTTCCCGTTTTCCTTATATAG
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