mRNA_L-elsbetiae_contig10341.373.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10341.373.1
Unique NamemRNA_L-elsbetiae_contig10341.373.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10341.373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10341contigL-elsbetiae_contig10341:2182..2541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size361
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815261.805562-CDS-L-elsbetiae_contig10341:2181..24871622815261.805562-CDS-L-elsbetiae_contig10341:2181..2487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10341 2182..2487 +
1691682803.4798648-CDS-L-elsbetiae_contig10341:2181..24871691682803.4798648-CDS-L-elsbetiae_contig10341:2181..2487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10341 2182..2487 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815261.820854-UTR-L-elsbetiae_contig10341:2487..25411622815261.820854-UTR-L-elsbetiae_contig10341:2487..2541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10341 2488..2541 +
1691682803.4935791-UTR-L-elsbetiae_contig10341:2487..25411691682803.4935791-UTR-L-elsbetiae_contig10341:2487..2541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10341 2488..2541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10341.373.1prot_L-elsbetiae_contig10341.373.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10341 2182..2487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10341.373.1

>prot_L-elsbetiae_contig10341.373.1 ID=prot_L-elsbetiae_contig10341.373.1|Name=mRNA_L-elsbetiae_contig10341.373.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
AGCSPTCRSPPTRAGLLLLPPPTPPPSQCPSTPKTLAAAADLARVPATRR
TWNGIEQRRRRRRRRSITSMPIGRRSRAGCCLPRRRWRTCAPAADAAYRR
S*
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mRNA from alignment at L-elsbetiae_contig10341:2182..2541+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10341.373.1 ID=mRNA_L-elsbetiae_contig10341.373.1|Name=mRNA_L-elsbetiae_contig10341.373.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig10341:2182..2541+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGGCTGTTCACCGACATGCCGCTCGCCGCCGACGCGTGCTGGTCTCCT
CCTCCTCCCGCCGCCGACGCCGCCGCCTTCCCAGTGCCCGTCAACGCCGA
AAACACTGGCTGCTGCTGCTGATCTCGCGCGGGTCCCGGCGACGCGAAGA
ACCTGGAACGGGATCGAGCAACGCCGCCGCCGCCGCCGCCGCCGCTCGAT
AACATCGATGCCGATCGGCCGCCGCTCCCGAGCTGGTTGCTGCTTACCGA
GGCGGCGGTGGAGGACTTGCGCCCCTGCAGCAGACGCAGCTTATCGCCGG
AGCTGAGGCGGCCTAGCGGCACAGGCTCTGGGGACGCATCCCCCGTCGGG
CTATCCATGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10341:2182..2541+

>mRNA_L-elsbetiae_contig10341.373.1 ID=mRNA_L-elsbetiae_contig10341.373.1|Name=mRNA_L-elsbetiae_contig10341.373.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig10341:2182..2541+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGGCTGTTCACCGACATGCCGCTCGCCGCCGACGCGTGCTGGTCTCCT
CCTCCTCCCGCCGCCGACGCCGCCGCCTTCCCAGTGCCCGTCAACGCCGA
AAACACTGGCTGCTGCTGCTGATCTCGCGCGGGTCCCGGCGACGCGAAGA
ACCTGGAACGGGATCGAGCAACGCCGCCGCCGCCGCCGCCGCCGCTCGAT
AACATCGATGCCGATCGGCCGCCGCTCCCGAGCTGGTTGCTGCTTACCGA
GGCGGCGGTGGAGGACTTGCGCCCCTGCAGCAGACGCAGCTTATCGCCGG
AGCTGAGCAGGCTGTTCACCGACATGCCGCTCGCCGCCGACGCGTGCTGG
TCTCCTCCTCCTCCCGCCGCCGACGCCGCCGCCTTCCCAGTGCCCGTCAA
CGCCGAAAACACTGGCTGCTGCTGCTGATCTCGCGCGGGTCCCGGCGACG
CGAAGAACCTGGAACGGGATCGAGCAACGCCGCCGCCGCCGCCGCCGCCG
CTCGATAACATCGATGCCGATCGGCCGCCGCTCCCGAGCTGGTTGCTGCT
TACCGAGGCGGCGGTGGAGGACTTGCGCCCCTGCAGCAGACGCAGCTTAT
CGCCGGAGCTGA
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