mRNA_L-elsbetiae_contig10341.374.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10341.374.1
Unique NamemRNA_L-elsbetiae_contig10341.374.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10341.374.1 vs. uniprot
Match: D8LS90_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS90_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.340e-30
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 2 
Query:    2 LRRSLEWEHEGTRQLIASEVLARTAKHVLACRLSLSRDSTEIEDESILPALYSDERLRAVARLLLNAVLFRTYSSDDTRGNFVSTA 259
            LRRSL WEHEG RQLIA+E+LARTAKH+LACRL  SR +  I DE  +P+LYSDERLRAVA L+LNAVLFRTYSSDD+ G  V++A
Sbjct:  811 LRRSLGWEHEGNRQLIAAEMLARTAKHILACRLRHSRVTMGIPDEVAMPSLYSDERLRAVAHLMLNAVLFRTYSSDDSSGKMVTSA 896
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10341.374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS90_ECTSI1.340e-3072.09eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10341contigL-elsbetiae_contig10341:3339..4724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size268
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815261.7443666-CDS-L-elsbetiae_contig10341:3339..33931622815261.7443666-CDS-L-elsbetiae_contig10341:3339..3393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10341 3340..3393 -
1691682803.443455-CDS-L-elsbetiae_contig10341:3339..33931691682803.443455-CDS-L-elsbetiae_contig10341:3339..3393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10341 3340..3393 -
1622815261.755353-CDS-L-elsbetiae_contig10341:3913..39901622815261.755353-CDS-L-elsbetiae_contig10341:3913..3990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10341 3914..3990 -
1691682803.453486-CDS-L-elsbetiae_contig10341:3913..39901691682803.453486-CDS-L-elsbetiae_contig10341:3913..3990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10341 3914..3990 -
1622815261.7645974-CDS-L-elsbetiae_contig10341:4588..47241622815261.7645974-CDS-L-elsbetiae_contig10341:4588..4724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10341 4589..4724 -
1691682803.46252-CDS-L-elsbetiae_contig10341:4588..47241691682803.46252-CDS-L-elsbetiae_contig10341:4588..4724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10341 4589..4724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10341.374.1prot_L-elsbetiae_contig10341.374.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10341 3340..4724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10341.374.1

>prot_L-elsbetiae_contig10341.374.1 ID=prot_L-elsbetiae_contig10341.374.1|Name=mRNA_L-elsbetiae_contig10341.374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
APAVTGVGARGDSAADRVRGSGTDGEARPRVPVKPLPRLHRDRGREHPAG
AVLRRAASGGGSSAAQRRALQDVFFGRHTRKFCVDCQRE
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mRNA from alignment at L-elsbetiae_contig10341:3339..4724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10341.374.1 ID=mRNA_L-elsbetiae_contig10341.374.1|Name=mRNA_L-elsbetiae_contig10341.374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig10341:3339..4724- (Laminarionema elsbetiae ELsaHSoW15)
GCTCCGGCGGTCACTGGAGTGGGAGCACGAGGGGACTCGGCAGCTGATCG
CGTCAGAGGTTCTGGCACGGACGGCGAAGCACGTCCTCGCGTGCCGGTTA
AGCCTCTCCCGCGACTCCACCGAGATCGAGGACGAGGTGCGTGTGTGTCA
CAAAGTTACAGAGAGCTACTTTTTTTCGTACTCTACGGACAAAGTTGGGG
GCGCGGCGGAGGATAAGGCAGACAGGGGAGCGCAGGGAAAAAATAAACAG
GAGTGGGGTGGGGTTCCGTAGGGTGTTCGACTGCTGTGTAGCCCTGCTGG
TATTTATGGCCGCATCACATACGGTCGCCCGCGCAACCGTACCTTAGGCG
TGAATTTGGTACCCTTTCCCTCCCCGGCCTTGTGTGGCAAGGCCACCGGG
ACCGGCGGTGCGTGCCGTGTGTTGCCGTCTTATTGTGTTTTTTGAGCACT
TGCTCCCACGATTTGGTGGGTTGAATCGCAGCTTCAGAAACGAAAAACCA
CCGTCGTTGCTGTTTGTCCACACCGCTCGTCTCGTGCACCCGCATGGTTC
TCGTTTGATGTTAAGCGATTCGGGGTACCCCCCCCCATTCACCCGTATTT
TCGGCCCCCAGTCCCCCCCCCACCCCCGGGGCGTGTTTTTTTAAGTTTTG
CGTCTGTCCCATCCTCCTCCTTCTCCTCCTCCTCTTCCTTCTCCCCCTCT
GTCCTTGCCTTTTCTTATGCCTCGCCTTTGGAAGAGCATCCTGCCGGCGC
TGTACTCCGACGAGCGGCTTCGGGCGGTGGCTCGTCTGCTGCTCAACGCC
GTGCTCTTCAGGTGAGAGAGGGGGGATGGATACTCACGATTCGCATCTAG
ACTAATCGATTTATTTCTTGTCCTTTAATTTACCCCCTTTTCATGTATCT
CAATACACACGTTTGTGCATTTGAAACCACACACACCTGCGTAAAATTGT
ACAAGTATGTATGTAAGCGGCCGTTTTTTTCCGTGGCGCGGTTGAATATG
AAGAAGTTGCCGCGGGGTAGGCGGGATTTCGCGGTGAAGTTAATTCTGTC
CGGAACCCCTTTCCCCTGTCACCCTTCCTGCGGGGTCCACCCTTTGTCCT
CCGCTACCGCGTGTGATGTCTGGGGTGTTGGCAAGTGCCCCCCCCCCCGC
GCCCCCGCGTGCACGACGCAGCAACGAGGTTTACTGAAAAGCCCCCACCC
CAAACCCGTCCCCTCCCCCTCCCCTGGCCTAAACTTTTCGTGTGTCACGT
GTGTGTCACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTCGTGTATCATATGTATTTGGTCCATCAGGACGTATTCTTCGGACGAC
ACACGAGGAAATTTTGTGTCGACTGCCAGCGGGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10341:3339..4724-

>mRNA_L-elsbetiae_contig10341.374.1 ID=mRNA_L-elsbetiae_contig10341.374.1|Name=mRNA_L-elsbetiae_contig10341.374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig10341:3339..4724- (Laminarionema elsbetiae ELsaHSoW15)
GCTCCGGCGGTCACTGGAGTGGGAGCACGAGGGGACTCGGCAGCTGATCG
CGTCAGAGGTTCTGGCACGGACGGCGAAGCACGTCCTCGCGTGCCGGTTA
AGCCTCTCCCGCGACTCCACCGAGATCGAGGACGAGGCTCCGGCGGTCAC
TGGAGTGGGAGCACGAGGGGACTCGGCAGCTGATCGCGTCAGAGGTTCTG
GCACGGACGGCGAAGCACGTCCTCGCGTGCCGGTTAAGCCTCTCCCGCGA
CTCCACCGAGATCGAGGACGAGAGCATCCTGCCGGCGCTGTACTCCGACG
AGCGGCTTCGGGCGGTGGCTCGTCTGCTGCTCAACGCCGTGCTCTTCAGA
GCATCCTGCCGGCGCTGTACTCCGACGAGCGGCTTCGGGCGGTGGCTCGT
CTGCTGCTCAACGCCGTGCTCTTCAGGACGTATTCTTCGGACGACACACG
AGGAAATTTTGTGTCGACTGCCAGCGGGAGGACGTATTCTTCGGACGACA
CACGAGGAAATTTTGTGTCGACTGCCAGCGGGAG
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