prot_L-elsbetiae_contig15207.3717.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig15207.3717.1
Unique Name	prot_L-elsbetiae_contig15207.3717.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	122

Homology

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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: A0A6H5K617_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K617_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 6.460e-70
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0

Query:   13 MLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 122
            ML+IN TPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV
Sbjct:    1 MLVINHTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 110

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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: D7G7C5_ECTSI (Coatomer subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C5_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 1.160e-64
Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 0

Query:   12 QMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 122
            +ML+INRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV
Sbjct:  754 EMLVINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 864

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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: A0A7S2KWV3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KWV3_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.380e-60
Identity = 92/114 (80.70%), Postives = 106/114 (92.98%), Query Frame = 0

Query:    9 LLWQMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 122
            +L  +L+INRTPNTL NLTVELSTMGD+++VERPQSHTIGPLD  NIRA+IKVSSTETGHIFGTIVYE++ST EK YIN+NDIHMDIMDYI+PA+C++E FRSMWAEFEWENKV
Sbjct:   50 ILLDILVINRTPNTLANLTVELSTMGDMKIVERPQSHTIGPLDQINIRASIKVSSTETGHIFGTIVYEDASTQEKGYINMNDIHMDIMDYIRPATCTDEVFRSMWAEFEWENKV 163

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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: A0A835Z7E2_9STRA (Coatomer subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E2_9STRA)

HSP 1 Score: 201 bits (512), Expect = 7.300e-58
Identity = 97/111 (87.39%), Postives = 107/111 (96.40%), Query Frame = 0

Query:   12 QMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 122
            ++L+INRTP TLTNLTVEL+TMGDLRLVERPQ+HTIGPLD R IRANIKVSSTETGHIFGTIV+ENSSTAEK YINL+DIH+DIMDYI+PA+CSEEAFRSMWAEFEWENKV
Sbjct:  747 EILVINRTPQTLTNLTVELATMGDLRLVERPQAHTIGPLDQRTIRANIKVSSTETGHIFGTIVFENSSTAEKAYINLSDIHLDIMDYIRPATCSEEAFRSMWAEFEWENKV 857

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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: A0A7S2V1X2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1X2_9STRA)

HSP 1 Score: 190 bits (482), Expect = 7.900e-58
Identity = 92/112 (82.14%), Postives = 105/112 (93.75%), Query Frame = 0

Query:   12 QMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPAS-CSEEAFRSMWAEFEWENKV 122
            ++L+INRTPNTLTNLTVEL+TMGDL+LVERPQS+TIGPLD R IRANIKVSSTETGH+FGTIVYENSSTA+K YINLNDIH+DIMDYI P+S C+++AFR MW EFEWENKV
Sbjct:  100 EILVINRTPNTLTNLTVELATMGDLKLVERPQSYTIGPLDQRTIRANIKVSSTETGHVFGTIVYENSSTAQKAYINLNDIHLDIMDYIYPSSNCTDDAFRRMWEEFEWENKV 211

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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: A0A7S1E5N2_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E5N2_9STRA)

HSP 1 Score: 186 bits (473), Expect = 4.740e-57
Identity = 88/111 (79.28%), Postives = 103/111 (92.79%), Query Frame = 0

Query:   12 QMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 122
            ++L+INRTPNTL NLTVELSTMGD+++VERPQ  T+GPLD   IRA+IKVSSTETGHIFGTIVY+++ST EK YINLNDIHMDIMDYI+PA+C++EAFRSMWAEFEWENKV
Sbjct:   57 EILLINRTPNTLANLTVELSTMGDMKIVERPQPQTLGPLDQATIRASIKVSSTETGHIFGTIVYDDTSTMEKGYINLNDIHMDIMDYIRPATCTDEAFRSMWAEFEWENKV 167

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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: F0YGU1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGU1_AURAN)

HSP 1 Score: 194 bits (492), Expect = 9.660e-56
Identity = 93/111 (83.78%), Postives = 106/111 (95.50%), Query Frame = 0

Query:   12 QMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 122
             +LI+NRTP+TLTNLTVEL+TMGDL+L+ERPQS T+GPLD R+IRANIKVSSTETGHIFGTIVYE SSTAEKTYINLN+IH+DIMDYI+PASCS++AFR MWAEFEWENKV
Sbjct:  536 DILIVNRTPSTLTNLTVELATMGDLKLIERPQSLTMGPLDQRSIRANIKVSSTETGHIFGTIVYEKSSTAEKTYINLNNIHLDIMDYIRPASCSDQAFRHMWAEFEWENKV 646

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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: B8C072_THAPS (Coatomer subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C072_THAPS)

HSP 1 Score: 192 bits (489), Expect = 6.210e-55
Identity = 92/114 (80.70%), Postives = 106/114 (92.98%), Query Frame = 0

Query:    9 LLWQMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 122
            +L ++L+INRTPNTL NLTVELSTMGD+++VERPQSHTIGPLD   IRA+IKVSSTETGHIFGTIVYE++ST EK YINLNDIHMDIMDYI+PA+C++E FRSMWAEFEWENKV
Sbjct:  636 ILLEILLINRTPNTLANLTVELSTMGDMKIVERPQSHTIGPLDQMTIRASIKVSSTETGHIFGTIVYEDASTQEKGYINLNDIHMDIMDYIRPATCTDEVFRSMWAEFEWENKV 749

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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: A0A7S1UYW3_9STRA (Coatomer subunit beta n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYW3_9STRA)

HSP 1 Score: 193 bits (490), Expect = 6.650e-55
Identity = 92/111 (82.88%), Postives = 105/111 (94.59%), Query Frame = 0

Query:   12 QMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 122
            ++L+INRTPNTL+NLTVELSTMGD+++VERPQ+HTIGPLD   IRA+IKVSSTETGHIFGTIVYE+SST EK YINLNDIHMDIMDYI+PA C++EAFRSMWAEFEWENKV
Sbjct:  706 EILVINRTPNTLSNLTVELSTMGDMKIVERPQAHTIGPLDQMTIRASIKVSSTETGHIFGTIVYEDSSTMEKGYINLNDIHMDIMDYIRPAFCTDEAFRSMWAEFEWENKV 816

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BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Match: F0YIR7_AURAN (Coatomer subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIR7_AURAN)

HSP 1 Score: 191 bits (486), Expect = 1.990e-54
Identity = 94/114 (82.46%), Postives = 107/114 (93.86%), Query Frame = 0

Query:    9 LLWQMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPLDSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIKPASCSEEAFRSMWAEFEWENKV 122
            +L ++LIINRTP+TLTNLTVEL+TMGDL+LVERPQS TIGPL  R+I ANIKVSSTETGHIFGTIVYENSSTAEKT++NLN+IH+DIMDYI+PA CS+E FRSMWAEFEWENKV
Sbjct:  761 ILLEILIINRTPSTLTNLTVELATMGDLKLVERPQSLTIGPLAQRSINANIKVSSTETGHIFGTIVYENSSTAEKTFVNLNNIHLDIMDYIRPALCSDEMFRSMWAEFEWENKV 874

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig15207.3717.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K617_9PHAE	6.460e-70	98.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G7C5_ECTSI	1.160e-64	98.20	Coatomer subunit beta n=1 Tax=Ectocarpus siliculos...	[more]
A0A7S2KWV3_9STRA	1.380e-60	80.70	Hypothetical protein (Fragment) n=1 Tax=Skeletonem...	[more]
A0A835Z7E2_9STRA	7.300e-58	87.39	Coatomer subunit beta n=1 Tax=Tribonema minus TaxI...	[more]
A0A7S2V1X2_9STRA	7.900e-58	82.14	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S1E5N2_9STRA	4.740e-57	79.28	Hypothetical protein n=2 Tax=Thalassionema nitzsch...	[more]
F0YGU1_AURAN	9.660e-56	83.78	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
B8C072_THAPS	6.210e-55	80.70	Coatomer subunit beta n=1 Tax=Thalassiosira pseudo...	[more]
A0A7S1UYW3_9STRA	6.650e-55	82.88	Coatomer subunit beta n=1 Tax=Grammatophora oceani...	[more]
F0YIR7_AURAN	1.990e-54	82.46	Coatomer subunit beta n=1 Tax=Aureococcus anophage...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029446	Coatomer beta subunit, appendage platform domain	PFAM	PF14806	Coatomer_b_Cpla	coord: 82..122 e-value: 1.4E-17 score: 63.9
IPR011710	Coatomer beta subunit, C-terminal	PFAM	PF07718	Coatamer_beta_C	coord: 12..76 e-value: 5.1E-27 score: 94.5
None	No IPR available	PANTHER	PTHR10635:SF0	COATOMER SUBUNIT BETA	coord: 12..122
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..24 score: 0.478
IPR016460	Coatomer beta subunit (COPB1)	PANTHER	PTHR10635	COATOMER SUBUNIT BETA	coord: 12..122

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig15207	contig	L-elsbetiae_contig15207:943..1778 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig15207.3717.1	mRNA_L-elsbetiae_contig15207.3717.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig15207 943..1778 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig15207.3717.1 ID=prot_L-elsbetiae_contig15207.3717.1|Name=mRNA_L-elsbetiae_contig15207.3717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
FCRLGFLSLLWQMLIINRTPNTLTNLTVELSTMGDLRLVERPQSHTIGPL
DSRNIRANIKVSSTETGHIFGTIVYENSSTAEKTYINLNDIHMDIMDYIK
PASCSEEAFRSMWAEFEWENKV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029446	COPB1_appendage_platform_dom
IPR011710	Coatomer_bsu_C
IPR016460	COPB1