mRNA_L-elsbetiae_contig15205.3716.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15205.3716.1
Unique NamemRNA_L-elsbetiae_contig15205.3716.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15205.3716.1 vs. uniprot
Match: A0A6H5JT94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT94_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.990e-31
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 MKCGKGGCNATANPADTMPITCSNKSTPHQHYRYDMIPTFFTVVPANSTHDCRPKTRDDVPVPSSTSTLTPALEEMLLCDAEECIHLDIEHQKMRSGYILDVKYVA 318
            MKCG  GCNATANP D +P TCSNK+  + H  YDM+ T FTV+P NS H C P + D +P+PS+ S  T  LE+  LCD EE ++LD + QK RSG+ +  KYVA
Sbjct:   88 MKCGHNGCNATANPTDALPTTCSNKTDRYVHNTYDMVRTLFTVIPMNSVHGCGPISPDGLPIPSTMSINTKVLEDAFLCDGEEYVNLDSDEQKNRSGWFIGTKYVA 193
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BLAST of mRNA_L-elsbetiae_contig15205.3716.1 vs. uniprot
Match: A0A6H5JHK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 4.350e-12
Identity = 35/67 (52.24%), Postives = 43/67 (64.18%), Query Frame = -2 
Query:    3 VEVEEGTGTSSRVLGLQSWVLLAGTTVKNVGIMS*R*CWWGVLLLEQVMGMVSAGLAVALQPPLPHF 203
            +++ +G G  S  +G QSW    G TVK VG MS     WG++LLEQVMG  S GLAVALQP  P+F
Sbjct:    1 MDMVDGMGRLSGEMGPQSWAEFMGMTVKRVGTMSYVLWTWGLVLLEQVMGRASVGLAVALQPLWPYF 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15205.3716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT94_9PHAE2.990e-3153.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHK4_9PHAE4.350e-1252.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15205contigL-elsbetiae_contig15205:2867..3583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size389
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.1900618-CDS-L-elsbetiae_contig15205:2866..30791622815619.1900618-CDS-L-elsbetiae_contig15205:2866..3079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15205 2867..3079 +
1691682995.064974-CDS-L-elsbetiae_contig15205:2866..30791691682995.064974-CDS-L-elsbetiae_contig15205:2866..3079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15205 2867..3079 +
1622815619.2000809-CDS-L-elsbetiae_contig15205:3409..35831622815619.2000809-CDS-L-elsbetiae_contig15205:3409..3583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15205 3410..3583 +
1691682995.073628-CDS-L-elsbetiae_contig15205:3409..35831691682995.073628-CDS-L-elsbetiae_contig15205:3409..3583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15205 3410..3583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15205.3716.1prot_L-elsbetiae_contig15205.3716.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15205 2867..3583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15205.3716.1

>prot_L-elsbetiae_contig15205.3716.1 ID=prot_L-elsbetiae_contig15205.3716.1|Name=mRNA_L-elsbetiae_contig15205.3716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MKCGKGGCNATANPADTMPITCSNKSTPHQHYRYDMIPTFFTVVPANSTH
DCRPKTRDDVPVPSSTSTLTPALEEMLLCDAEECIHLDIEHQKMRSGYIL
DVKYVAGGRGEEALGHGPALGVLGRRPQR
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mRNA from alignment at L-elsbetiae_contig15205:2867..3583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15205.3716.1 ID=mRNA_L-elsbetiae_contig15205.3716.1|Name=mRNA_L-elsbetiae_contig15205.3716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=717bp|location=Sequence derived from alignment at L-elsbetiae_contig15205:2867..3583+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAATGCGGCAAGGGCGGCTGCAATGCCACCGCCAATCCTGCCGACAC
CATGCCCATCACCTGTTCCAACAAGAGCACACCCCACCAGCACTATCGCT
ACGACATGATTCCGACGTTCTTCACCGTCGTTCCGGCTAACAGCACCCAT
GACTGCAGGCCCAAAACTCGGGATGATGTCCCCGTACCTTCCTCGACCTC
CACCCTTACACCGGTGAGATGTTACCTTTGATTTTCACTTGCCGTAGATG
TTCCTGCAACTTGTCACATTTTCCTGTCGCTTCAAATATTTCCTCTTTCC
ACCCATTGTTTTTTCCTTCGGTCCGGATCCCTCCCTTCCCGCATACCTCC
GACTGTATTCTGCTGTTCTGATTTCACAACGCTCTTCTGTTTGCCTCGCC
CTTCGGTCGATCGTTCTTGCGTCTCCACTTCAAAGGAGCGCTTTCTCCCT
TCACCGCAATCTTCCTATCGGCAAACGTTCATTTTGTTAACACACATGTC
TTATGTGTGCTCCCTCATCCCCTATTTTCCCCTAACATACAAGGCGCTCG
AGGAAATGCTCTTATGCGACGCTGAGGAATGCATACACCTCGACATCGAA
CACCAGAAGATGCGATCCGGGTACATCTTGGACGTCAAGTACGTGGCGGG
CGGCCGTGGAGAAGAAGCGCTGGGGCACGGACCGGCGCTGGGGGTACTCG
GTCGTCGGCCTCAGCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15205:2867..3583+

>mRNA_L-elsbetiae_contig15205.3716.1 ID=mRNA_L-elsbetiae_contig15205.3716.1|Name=mRNA_L-elsbetiae_contig15205.3716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig15205:2867..3583+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAATGCGGCAAGGGCGGCTGCAATGCCACCGCCAATCCTGCCGACAC
CATGCCCATCACCTGTTCCAACAAGAGCACACCCCACCAGCACTATCGCT
ACGACATGATTCCGACGTTCTTCACCGTCGTTCCGGCTAACAGCACCCAT
GACTGCAGGCCCAAAACTCGGGATGATGTCCCCGTACCTTCCTCGACCTC
CACCCTTACACCGATGAAATGCGGCAAGGGCGGCTGCAATGCCACCGCCA
ATCCTGCCGACACCATGCCCATCACCTGTTCCAACAAGAGCACACCCCAC
CAGCACTATCGCTACGACATGATTCCGACGTTCTTCACCGTCGTTCCGGC
TAACAGCACCCATGACTGCAGGCCCAAAACTCGGGATGATGTCCCCGTAC
CTTCCTCGACCTCCACCCTTACACCGGCGCTCGAGGAAATGCTCTTATGC
GACGCTGAGGAATGCATACACCTCGACATCGAACACCAGAAGATGCGATC
CGGGTACATCTTGGACGTCAAGTACGTGGCGGGCGGCCGTGGAGAAGAAG
CGCTGGGGCACGGACCGGCGCTGGGGGTACTCGGTCGTCGGCCTCAGCGA
GCGCTCGAGGAAATGCTCTTATGCGACGCTGAGGAATGCATACACCTCGA
CATCGAACACCAGAAGATGCGATCCGGGTACATCTTGGACGTCAAGTACG
TGGCGGGCGGCCGTGGAGAAGAAGCGCTGGGGCACGGACCGGCGCTGGGG
GTACTCGGTCGTCGGCCTCAGCGA
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