mRNA_L-elsbetiae_contig10327.367.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10327.367.1
Unique NamemRNA_L-elsbetiae_contig10327.367.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10327.367.1 vs. uniprot
Match: A0A6H5JZR4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR4_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 6.210e-104
Identity = 188/257 (73.15%), Postives = 207/257 (80.54%), Query Frame = 2 
Query: 1091 LPSADNAFMPLCQFFGFPASAEAVLAEPGLVDAARRWLACVADTTASHMARASPLPAAAEQI---STGDWVLLGRREAVSRRLFDFPSPLKIELVRLPHAYTELHAQVSTSTSXXXXXXXXXXXXXXGPGVDR---------VGHPAVCLVCGKVLDASGRGACTRHARDCGCGLGLLFLLQECAVLLIHGRRASYFPSPYVDAYGERQRHTFRGRPLFLDQRRYDVVRGLWAKHLVAHEVVQNRSTSRQVIITNHY 1825
            LPSAD+AF PLC+FFGFP SAEA+LAEPGL+DAARRWLACV+ +    +     LPA    +   + G  +L  RRE V RRLFDFPSP+KI+LVRLPHAYTELHAQVS+S  XXXXXXXXXXXXXX                GHPAVCLVCG+VLDASGRG CTRHA +CGCG GL FLLQECAVLLIHGRRA+YFPSPYVDAYGERQRH+FRGRPL+LDQRRYDVVRGLW KHLVAHEVVQNRSTSRQVII +HY
Sbjct:   89 LPSADDAFSPLCRFFGFPTSAEALLAEPGLLDAARRWLACVSGS--ETVLGPGALPADGGPVVGNTVGSLLLRLRRENVCRRLFDFPSPVKIDLVRLPHAYTELHAQVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGHPAVCLVCGEVLDASGRGECTRHAAECGCGTGLFFLLQECAVLLIHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 343
[Close]
BLAST of mRNA_L-elsbetiae_contig10327.367.1 vs. uniprot
Match: A0A7S2H0X4_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0X4_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.480e-43
Identity = 88/166 (53.01%), Postives = 111/166 (66.87%), Query Frame = 2 
Query: 1328 LFDFPSPLKIELVRLPHAYTELHAQVSTSTSXXXXXXXXXXXXXXGPGVDRVGHPAVCLVCGKVLDASGRGACTRHARDCGCGLGLLFLLQECAVLLIHGRRASYFPSPYVDAYGERQRHTFRGRPLFLDQRRYDVVRGLWAKHLVAHEVVQNRSTSRQVIITNHY 1825
            L D P+  ++++V LPHAYTELH+ +++ TS                      HPAVCL+CG VL   G+G CT+HA+ CG G+G+ FLLQEC+VLLIHG RA YF SPYVDA+GER    FRGRPLFLD  R +V+R L A H V  +VV +RSTSRQVII ++Y
Sbjct:  157 LSDLPAKCRVDMVDLPHAYTELHSDLTSQTSSE--------------------HPAVCLMCGAVLCGDGKGECTKHAKICGLGVGIFFLLQECSVLLIHGPRACYFASPYVDAHGERHAQ-FRGRPLFLDPNRLEVLRLLAASHEVPAKVVHSRSTSRQVIINSYY 301
[Close]
BLAST of mRNA_L-elsbetiae_contig10327.367.1 vs. uniprot
Match: A0A7S2SNG9_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNG9_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.750e-37
Identity = 86/189 (45.50%), Postives = 113/189 (59.79%), Query Frame = 2 
Query: 1259 AAAEQISTGDWVLLGRREAVSRRLFDFPSPLKIELVRLPHAYTELHAQVSTSTSXXXXXXXXXXXXXXGPGVDRVGHPAVCLVCGKVLDASGRGACTRHARDCGCGLGLLFLLQECAVLLIHGRRASYFPSPYVDAYGERQRHTFRGRPLFLDQRRYDVVRGLWAKHLVAHEVVQNRSTSRQVIITNHY 1825
            AAA  +   +W L    +A+     D+P+   +ELV LP  YTELHAQV+  +                        PA+CLVCG+VL A G+G CT+HA+ C  G+G  FLLQEC+VL +HG R+ YF SPYVDA+GER  H FRGRPL+ D  R +V+R + A+H +  +VV  RS SRQVII  +Y
Sbjct:  377 AAAVALEQEEWELRSPSDALHYMWTDYPTFRPVELVSLPREYTELHAQVTAVSDSE--------------------RPALCLVCGQVLAADGKGLCTQHAQTCNVGVGAFFLLQECSVLFVHGPRSCYFASPYVDAHGERHGH-FRGRPLYTDPLRINVLRDIVARHEIPIKVVHTRSISRQVIIPEYY 544
[Close]
BLAST of mRNA_L-elsbetiae_contig10327.367.1 vs. uniprot
Match: A0A835YQN3_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQN3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.810e-36
Identity = 102/251 (40.64%), Postives = 129/251 (51.39%), Query Frame = 2 
Query: 1073 DGAAVALPSADNAFMPLCQFFGFPASAEAVLAEPGLVDAARRWLACVADTTASHMARASPLPAAAEQISTGDWVLLGRREAVSRRLFDFPSPLKIELVRLPHAYTELHAQVSTSTSXXXXXXXXXXXXXXGPGVDRVGHPAVCLVCGKVLDASGRGACTRHARDCGCGLGLLFLLQECAVLLIHGRRASYFPSPYVDAYGERQRHTFRGRPLFLDQRRYDVVRGLWAKHLVAHEVVQNRSTSRQVIITNHY 1825
            DGAA+    +D+    LC FFG P S  AVL +  +      WLA              PL  A E               V  R   +P    + LV LP +YT+LHA + TST                P       PAVCLVCG+ +   G G+C +HA  C    G+ FLLQEC VLL  G+RA+YF SPYVDAYGER R   RGRPLF+D+RRY V+R L+A+H VA EV + RS+ R+V+   +Y
Sbjct: 1564 DGAALPPEQSDDEMASLCGFFGMPTSLTAVLQDRDVRHLVSLWLA--------------PLTFALE--------------LVQLRYLSYPVGFSVRLVDLPKSYTDLHALL-TST----------------PRPPSDAFPAVCLVCGQAVSCGGDGSCWKHAAACSPNAGVFFLLQECTVLLTRGKRAAYFASPYVDAYGERHRQP-RGRPLFMDERRYSVLRDLYARHAVAAEVARIRSSGREVLHAGYY 1768
[Close]
BLAST of mRNA_L-elsbetiae_contig10327.367.1 vs. uniprot
Match: A0A6S9LH47_HETAK (E3 ubiquitin-protein ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LH47_HETAK)

HSP 1 Score: 137 bits (345), Expect = 1.150e-34
Identity = 68/100 (68.00%), Postives = 74/100 (74.00%), Query Frame = 2 
Query: 1526 ASGRGACTRHARDCGCGLGLLFLLQECAVLLIHGRRASYFPSPYVDAYGERQRHTFRGRPLFLDQRRYDVVRGLWAKHLVAHEVVQNRSTSRQVIITNHY 1825
            A GRG CT HA  CG G+GL FLLQEC VLL+HGRRA+YFPSPYVDAYGER +  FRGRPL+LD RR  VV  LW  H V  EV Q R T RQVIIT +Y
Sbjct:    1 ADGRGECTAHAARCGRGVGLFFLLQECQVLLLHGRRAAYFPSPYVDAYGERHKQ-FRGRPLYLDARRLAVVAALWRAHGVPREVAQRRGTHRQVIITGYY 99
[Close]
BLAST of mRNA_L-elsbetiae_contig10327.367.1 vs. uniprot
Match: K8YUN0_NANGC (E3 ubiquitin-protein ligase n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUN0_NANGC)

HSP 1 Score: 145 bits (366), Expect = 3.190e-32
Identity = 72/116 (62.07%), Postives = 89/116 (76.72%), Query Frame = 2 
Query: 1478 RVGHPAVCLVCGKVLDASGRGACTRHARDCGCGLGLLFLLQECAVLLIHGRRASYFPSPYVDAYGERQRHTFRGRPLFLDQRRYDVVRGLWAKHLVAHEVVQNRSTSRQVIITNHY 1825
            RV +P +CLVC   L+A GRG CT HAR CG G+G+ FLLQ+C+VLLI+  RA YFPSPYVD YGER +  FRGRPL LD+RR + +R +WAK  V +EVVQ RSTS+ VI+TN+Y
Sbjct:  725 RVENPVLCLVCNAALEA-GRGRCTAHARACGRGVGVFFLLQDCSVLLIYLDRACYFPSPYVDVYGERHKQ-FRGRPLHLDERRLEALRRVWAKQRVPYEVVQARSTSKHVILTNYY 838
[Close]
BLAST of mRNA_L-elsbetiae_contig10327.367.1 vs. uniprot
Match: A0A7S2ML06_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2ML06_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.870e-30
Identity = 61/111 (54.95%), Postives = 82/111 (73.87%), Query Frame = 2 
Query: 1493 AVCLVCGKVLDASGRGACTRHARDCGCGLGLLFLLQECAVLLIHGRRASYFPSPYVDAYGERQRHTFRGRPLFLDQRRYDVVRGLWAKHLVAHEVVQNRSTSRQVIITNHY 1825
            A+CLVCG++L+A G+G CT HA +CG G G+ FLLQEC  L++HG +A+Y  SPYVD++GE  +  +RGRPL LD  RYD++  LW+ HLV  +V+  R +SRQVII N Y
Sbjct:  207 ALCLVCGEILNAGGKGECTNHAFECGAGAGIFFLLQECIGLIMHGTKAAYVHSPYVDSHGETPQ--YRGRPLNLDLDRYDILHELWSGHLVRQKVIAERGSSRQVIIANFY 315
[Close]
BLAST of mRNA_L-elsbetiae_contig10327.367.1 vs. uniprot
Match: A0A7S4S2Y1_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S2Y1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.930e-29
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = 2 
Query: 1514 KVLDASGRGACTRHARDCGCGLGLLFLLQECAVLLIHGRRASYFPSPYVDAYGERQRHTFRGRPLFLDQRRYDVVRGLWAKHLVAHEVVQNRSTSRQVIITNHY 1825
            KVL+A G+G CT HA +CG G G+ FLLQEC  L++HG +A+Y  SPYVD++GE  +  +RGRPL LD  RYD+++ LW+ HLV  +V+  R +SRQVII N Y
Sbjct:    5 KVLNAGGKGECTNHAFECGAGAGIFFLLQECIGLIMHGTKAAYVHSPYVDSHGETPQ--YRGRPLNLDLDRYDILQELWSGHLVRQKVIAERGSSRQVIIANFY 106
[Close]
BLAST of mRNA_L-elsbetiae_contig10327.367.1 vs. uniprot
Match: A0A7S4MYL2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MYL2_9STRA)

HSP 1 Score: 135 bits (339), Expect = 8.290e-29
Identity = 70/160 (43.75%), Postives = 97/160 (60.62%), Query Frame = 2 
Query: 1346 PLKIELVRLPHAYTELHAQVSTSTSXXXXXXXXXXXXXXGPGVDRVGHPAVCLVCGKVLDASGRGACTRHARDCGCGLGLLFLLQECAVLLIHGRRASYFPSPYVDAYGERQRHTFRGRPLFLDQRRYDVVRGLWAKHLVAHEVVQNRSTSRQVIITNHY 1825
            P +  +  LP +YT+L+A++                             A+CLVCG+VL+A G+G CT+HA  CG G G+ FLLQEC  L++HG +A+Y  SPYVD++GE  +  +RGRPL LD  RYDV+R +W+ HLV   V+  R++SRQVII N Y
Sbjct:  851 PSRPRIKMLPTSYTDLYAELGALCPDSE-------------------QTALCLVCGQVLNAGGKGECTKHAYKCGGGCGVFFLLQECVSLIMHGVKAAYIHSPYVDSHGETPQ--YRGRPLNLDLDRYDVLREMWSGHLVRERVISERASSRQVIIANFY 989
[Close]
BLAST of mRNA_L-elsbetiae_contig10327.367.1 vs. uniprot
Match: A0A7S4S5A1_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S5A1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.730e-28
Identity = 62/111 (55.86%), Postives = 83/111 (74.77%), Query Frame = 2 
Query: 1493 AVCLVCGKVLDASGRGACTRHARDCGCGLGLLFLLQECAVLLIHGRRASYFPSPYVDAYGERQRHTFRGRPLFLDQRRYDVVRGLWAKHLVAHEVVQNRSTSRQVIITNHY 1825
            A+CLVCG+VL+A G+G CT HA +CG G G+ FLLQEC  L++HG +A+Y  SPYVD++GE  +  +RGRPL LD  RYD+++ LW+ HLV  +V+  R +SRQVII N Y
Sbjct:  951 ALCLVCGEVLNAGGKGECTNHAFECGAGAGIFFLLQECIGLIMHGTKAAYVHSPYVDSHGETPQ--YRGRPLNLDLDRYDILQELWSGHLVRQKVIAERGSSRQVIIANFY 1059
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10327.367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZR4_9PHAE6.210e-10473.15E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
A0A7S2H0X4_9STRA1.480e-4353.01E3 ubiquitin-protein ligase n=1 Tax=Dictyocha spec... [more]
A0A7S2SNG9_9STRA1.750e-3745.50E3 ubiquitin-protein ligase n=1 Tax=Rhizochromulin... [more]
A0A835YQN3_9STRA2.810e-3640.64E3 ubiquitin-protein ligase n=1 Tax=Tribonema minu... [more]
A0A6S9LH47_HETAK1.150e-3468.00E3 ubiquitin-protein ligase n=1 Tax=Heterosigma ak... [more]
K8YUN0_NANGC3.190e-3262.07E3 ubiquitin-protein ligase n=2 Tax=Nannochloropsi... [more]
A0A7S2ML06_9STRA1.870e-3054.95E3 ubiquitin-protein ligase n=1 Tax=Helicotheca ta... [more]
A0A7S4S2Y1_9STRA6.930e-2954.81E3 ubiquitin-protein ligase n=1 Tax=Ditylum bright... [more]
A0A7S4MYL2_9STRA8.290e-2943.75E3 ubiquitin-protein ligase n=1 Tax=Odontella auri... [more]
A0A7S4S5A1_9STRA2.730e-2855.86E3 ubiquitin-protein ligase n=1 Tax=Ditylum bright... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10327contigL-elsbetiae_contig10327:1114..6961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue7.9e-29
Seed eggNOG ortholog35128.Thaps22947
KEGG koko:K10625,ko:K10626,ko:K11978
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Ring finger
EggNOG OGs2XE00@2836,KOG1139@1,KOG1139@2759,KOG1140@1,KOG1140@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons8
Model size2380
Cds size1074
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10327.367.1prot_L-elsbetiae_contig10327.367.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10327 2926..6409 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815260.973947-UTR-L-elsbetiae_contig10327:1113..13881622815260.973947-UTR-L-elsbetiae_contig10327:1113..1388Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10327 1114..1388 +
1691682802.7974417-UTR-L-elsbetiae_contig10327:1113..13881691682802.7974417-UTR-L-elsbetiae_contig10327:1113..1388Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10327 1114..1388 +
1622815260.9886343-UTR-L-elsbetiae_contig10327:2104..22721622815260.9886343-UTR-L-elsbetiae_contig10327:2104..2272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10327 2105..2272 +
1691682802.8114038-UTR-L-elsbetiae_contig10327:2104..22721691682802.8114038-UTR-L-elsbetiae_contig10327:2104..2272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10327 2105..2272 +
1622815261.000127-UTR-L-elsbetiae_contig10327:2614..29251622815261.000127-UTR-L-elsbetiae_contig10327:2614..2925Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10327 2615..2925 +
1691682802.82-UTR-L-elsbetiae_contig10327:2614..29251691682802.82-UTR-L-elsbetiae_contig10327:2614..2925Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10327 2615..2925 +
1622815261.0778348-UTR-L-elsbetiae_contig10327:6409..69611622815261.0778348-UTR-L-elsbetiae_contig10327:6409..6961Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10327 6410..6961 +
1691682802.8958335-UTR-L-elsbetiae_contig10327:6409..69611691682802.8958335-UTR-L-elsbetiae_contig10327:6409..6961Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10327 6410..6961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815261.010347-CDS-L-elsbetiae_contig10327:2925..31451622815261.010347-CDS-L-elsbetiae_contig10327:2925..3145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10327 2926..3145 +
1691682802.8306408-CDS-L-elsbetiae_contig10327:2925..31451691682802.8306408-CDS-L-elsbetiae_contig10327:2925..3145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10327 2926..3145 +
1622815261.0199103-CDS-L-elsbetiae_contig10327:3164..33871622815261.0199103-CDS-L-elsbetiae_contig10327:3164..3387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10327 3165..3387 +
1691682802.8420315-CDS-L-elsbetiae_contig10327:3164..33871691682802.8420315-CDS-L-elsbetiae_contig10327:3164..3387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10327 3165..3387 +
1622815261.0329382-CDS-L-elsbetiae_contig10327:4004..41611622815261.0329382-CDS-L-elsbetiae_contig10327:4004..4161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10327 4005..4161 +
1691682802.8519897-CDS-L-elsbetiae_contig10327:4004..41611691682802.8519897-CDS-L-elsbetiae_contig10327:4004..4161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10327 4005..4161 +
1622815261.0441027-CDS-L-elsbetiae_contig10327:4837..50831622815261.0441027-CDS-L-elsbetiae_contig10327:4837..5083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10327 4838..5083 +
1691682802.8660116-CDS-L-elsbetiae_contig10327:4837..50831691682802.8660116-CDS-L-elsbetiae_contig10327:4837..5083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10327 4838..5083 +
1622815261.0551004-CDS-L-elsbetiae_contig10327:5345..55191622815261.0551004-CDS-L-elsbetiae_contig10327:5345..5519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10327 5346..5519 +
1691682802.876389-CDS-L-elsbetiae_contig10327:5345..55191691682802.876389-CDS-L-elsbetiae_contig10327:5345..5519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10327 5346..5519 +
1622815261.067775-CDS-L-elsbetiae_contig10327:6355..64091622815261.067775-CDS-L-elsbetiae_contig10327:6355..6409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10327 6356..6409 +
1691682802.887212-CDS-L-elsbetiae_contig10327:6355..64091691682802.887212-CDS-L-elsbetiae_contig10327:6355..6409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10327 6356..6409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10327.367.1

>prot_L-elsbetiae_contig10327.367.1 ID=prot_L-elsbetiae_contig10327.367.1|Name=mRNA_L-elsbetiae_contig10327.367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=358bp
MVLHQAAAAAAAARAVVVAVATVAVQRWQQQRSVRPASGRPRDRLPAHGS
ADGPRLHGDAVALAPGDNTSTSKTAAAAVAPSPTGAGSADAVEGAGRESA
PGAVRADGAAVALPSADNAFMPLCQFFGFPASAEAVLAEPGLVDAARRWL
ACVADTTASHMARASPLPAAAEQISTGDWVLLGRREAVSRRLFDFPSPLK
IELVRLPHAYTELHAQVSTSTSSNSGANGGEGGAAGGPGVDRVGHPAVCL
VCGKVLDASGRGACTRHARDCGCGLGLLFLLQECAVLLIHGRRASYFPSP
YVDAYGERQRHTFRGRPLFLDQRRYDVVRGLWAKHLVAHEVVQNRSTSRQ
VIITNHY*
back to top

mRNA from alignment at L-elsbetiae_contig10327:1114..6961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10327.367.1 ID=mRNA_L-elsbetiae_contig10327.367.1|Name=mRNA_L-elsbetiae_contig10327.367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5848bp|location=Sequence derived from alignment at L-elsbetiae_contig10327:1114..6961+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCTGCTGCTGCTGACGATGCTGCTACCGGTGCCGCCGGTGGAGTCGG
TATCGTTGAAGCTTTGTTGGCGTCGGCGGCGGCCGGCACCACCTTGGAGT
CGACCGTGCAGCAACTGGGGCAGGTTGACCCCGTGGCGCGATCAGGGCTG
GAGTGGGATCAGCGGCTGGAAGACCTGGACAAGTTGCTGGTGCTGACCGA
GGCCATGGAGATGCTGGGGACGGCGCTGGTTGTGCTCCCGGCCGGGGATG
CTAAGGGCGCGAGGCATTGCGTTGGGTGAGGACTAAATATGGATTTTACG
GCCGTGCGTTTTGACAGGAGCACTGACCGTAAGACCGCCCGCAGTATTTT
ATCCACGACGAGGCGTACCGGTGGCTTCAAGGGGGCTGATGCTCCGGTAC
ACTGCATAATCACTTTTTTCAGCAACGAAATGTAATGTTGTATGTAGCGC
CGCTGCCCTGCTTGCGGTTTACGTTTCGAAATGCTGATATTTACACCACC
GCCTGCCGTCACAGCATCTTCTCCGGTGTTGTTTGGAAGGAGCGAGTCTG
TGTGCACCTTTTAAGCGATGCAAGCTCAGCTTTGTGTCGTGAGGTTGCTC
TGTAGTTCGGATGACACGCCTCTCAAAAGTAAATAGTTCTAAAGATGTTT
TTATTTACCTTAGGGCCCTCGAAAGGCATCACCGGGGGGCGTGCCGCATA
CTCCCTCCTCGATTGTTTACGGGATATTTAGACGTTGCTCCCTTCTGCGC
ATATTTTTTATTCTCGTCACCGCCAGCCTATCACGGTGTGTGTCTGCGAC
CTGTTGTGCTCTCACCGGAAGCGGAGCAACCGCCTGTAGGAGTGAAATTA
AGGACGCCCATTTACCCCCTTCATCTTCATATTTAGACCTCTCCCTGCCC
TTTGGCTTTACTGCCACCCCCGGGTCCCATGATGGATGATATCACCCCCC
CCCCCCTCTCTGCTTGTCCGTCTGCGTCTGCCTTCTTTCAGCGCCCTGTG
CATGGTTCGGGTCCTGCAGGTGCTCGCGGCTGCCCTCTTCCGAGACCACC
AACATAAACTCGAGGAGTTTCAGGTTGAGTCGCTATTTTTGGACGGGGGC
GTGCGGCAGGCTGGAGGGAAAGGAGGAGCGGGAGGGGAGCATGAAGGCGA
AAAGGACAGGTGCATTGGGCGTCGCTGTGTGTATTGGGGCGTGTTGTGTG
ATGTGTCGTGTGTTCATCGATGGGTATTGGTCGTGTCGTATCGTGCGTAT
GCTTTTCCCGTATCACCTCGGGGTATTATTGTTTGCAAGCCTTTCTAGGG
CGGCCTTGGGGATGCAAACAGCTGTTGGCGATTACAGCTGTCGGCTATTT
AGAATTAAGTCGCATGTGTCCTTTCCGCGCGCGATTGTGAGTTTCACCGC
CCAGCTGTTGTACTACTGTTTGTTTACCTGTTCGGGTGCTCGTTAACACC
CGGTACGCCTGTGTTGTTTGTTTTTTCTTGGACTGTTTCGGCTGTTTTCA
GCACCTCGTCGGTCTTGGAGGGCCCGGCGGCACTAGCGCCAGCGGCGGCG
GCACCATCAGCAACCTCTGGTGGTGAAGATTGCAGGAGGATCGTACCCCG
GGACCGCCACCCCCTGTTGTGGGGCGGCAGCGACAGCGATGGCGGCGGTA
GTGGTGGTGGCGACCCCCTGCAGCTCCTCGGAGGAAGACACGCCGCCGCC
GAGAGGGTGCGGACCTTCTCCGTACGGGCAGATGACTGTTCTGTCGACGA
GGACGTGGGAAAGTTGCCGGCACCTACGGCGATGACGGTAGCGGCGGGAG
GAGAGAGCACGGATGGTGCTGCACCAGGCGGCGGCGGCGGCGGCGGCGGC
GCGAGCGGTGGTGGTGGCGGTGGCAACGGTGGCGGTGCAGCGGTGGCAGC
AGCAGCGATCGGTACGTCCGGCTAGCGGGCGCCCACGTGACCGCCTTCCT
GCGCACGGCTCTGCTGATGGTCCACGTCTGCATGGAGACGCCGTCGCCCT
TGCGCCAGGAGACAACACAAGCACCAGCAAAAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTAGCACCATCACCAACAGGTGCTGGTTCGGCGGA
CGCTGTCGAGGGAGCGGGGAGGGAATCAGCGCCGGGAGCGGTGCGGGCTG
ACGGGGCGGCCGTGGCGCTCCCTAGCGCGGACAACGCGTTCATGCCTCTG
TGCCAATTTTTCGGGTTTCCCGCCTCTGCCGAGGCCGTGCTGGCGGAACC
TGGACTTGTGGATGCCGCTCGACGGTGCGTGCGTGCGTGCGTGCGTGCGT
GCGTGTGCGCAGTTTTGTTTTATTTGTTTTGCCGGTTTTGGTTTGATTTT
TCGCGCCAATCTCGGGTACATAAAATGTAGCCGGGGGGCAAATTAGTCGT
AATCGCGAATGACGCACGGGGCGTGTCCATTACACATGCACAACTCAACT
GGCGCGACCAACTTCAAACTTGCCGTGGTCATCAGTTGCGTCAGTTGGAT
CGGCTACCTTTTGGGGGCAGCATGCGGTTGCACCCACACCCACAATAGTG
CACATGTGGGCGTTTTTGAGCAGAAGTAGCAGGAGGTTTGAGAAACACCC
TTTCTGCTTCTAGGCGACAGCTCGATGGCGGTCTCGGGTGAGCGGCTGGC
CAATTATCCTATTCTGCTGCTGTGGTCCCGTCCACCTACCTCTGTATGTA
TATCGGCGTGTTGTTTCTTTCCCCCGCTTCTTCGCTTGGGAGTATTATTT
TCAACCGCGCTTTGTGTTGCAAAGCAATAGCGCGTAGCCAACGACACCCT
TTCACGACTGCCTAACCCTGCCTCTCCCTGCCATGCGTACCCTTTTCCGT
GGGGCGTCTGTGTCGGTACGCGGCGTTTTGTTTTTCCGAAGGTGGCTCGC
TTGCGTGGCGGATACCACAGCCTCCCACATGGCCAGGGCTAGTCCCCTCC
CGGCGGCTGCGGAGCAAATCAGCACCGGGGACTGGGTACTGCTTGGCAGG
CGGGAGGCGGTCTCGCGGCGCCTCTTCGACTTCCCGTCGCCCCTCAAGGT
CGGTTCGGAGGCATACATTGGGCAGGTATCATGGCGGCCGGCTTGCTTTG
CTTGTGTGCTCTGACTACTGTGTGCATCGTTTTCTCCGCCCCTCCTCCCC
CTCTGGAGAGCGCTCCACTCCTTCCGGCGTCGCCTTCTTAGCGTTGGTGG
CGGAAACGCTTGCAGCTGGCGTCGCTTCATGGACTCCAATGTCTGTTACG
GCCGGAATAGAAGGCTGCCGCGTCCTCTTCTCCAATGCGATAGCGGTTTA
AACCCGGGGGGGGGGTCAACGCGACGGTATCCACATTGCAATCGCCTTCT
TGCCTTGGAATAGCTCAAGCCCTCAGTGCTATCCACGAGGGGTATACTCC
ACACCTTTCAGCGTTTTCACTCTTCAACGGCACACCTTCCCGTACCCCAA
CCTCAGTTACACCTGGCACTGCCCTCTCCTCCACCTTCCAGCGTTTTCGC
TCATCAACAGCGCATCTTCCCGTACCCCAACCTAAACTGCCCCTTGCACT
GCCCTCTCCTACCTGTCTTGTTCCATTACCCGCCGGGGGGGGGGGGGGGG
GGGTCAGATCGAATTGGGGCGCCCCCCCCCCGCCCCCCCGGAGTTGCCCC
CCCAGGTGGCCCCCCCCCCCCCCCCCGTTCTTTTTCTGTCCCTCCCCCGG
GGGGGGGGGGGGGGGGGGCGTCAGATCGAATTGGTGCGCCTGCCCCACGC
CTACACGGAGTTGCACGCACAGGTGTCCACCTCCACCTCCAGCAACAGCG
GCGCCAACGGCGGCGAGGGCGGGGCCGCCGGGGGCCCGGGAGTGGACCGC
GTGGGCCACCCGGCGGTGTGCCTCGTGTGCGGCAAGGTTCTGGACGCGAG
CGGGCGCGGCGCTTGCACGAGGCACGCAAGGGACTGCGGCTGCGGGCTAG
GTCTCTTGTTCCTGCTACAGGTGCTTATGGTCGGATTGGAGACGCTTGGA
TGGGGGGCGTTCTTTGCCTTTGCGGGCAGAGGGTCTGCACAGATTTCGAT
ATTACCTCCCCCCTCCCCCCCCCCTCTTGCTGCCTGCACCCATTCTACTG
CAGCATGACCCCCCCCCCTCCTCTCGCCCTTCGCCTCCCATTTCTTGGCT
CTTCCCGGGCTCTCTGTTCTCCTGCACGAACGAACGAATGCCCACATCGA
AAACAACGGAAAACTGGCAAAACGATCAACAGGAGTGCGCGGTTCTTCTT
ATCCACGGTCGGCGCGCGTCGTACTTTCCGTCCCCATACGTGGACGCGTA
CGGCGAGCGGCAGCGGCACACCTTCCGGGGGAGGCCGCTGTTTTTGGACC
AGCGCCGGTACGACGTGGTTCGAGGGCTGTGGGCGAAGCACCTCGTGGCG
CACGAGGTAGGATTTCTTGGTTGTTGTTGTTGTTGTTGTTTTCTTCACAT
TAAGACCGTTCCGATCTCTCCGTCCAGTACCTCCGTACGTCCGTACTAGT
CAAATACTCGACGCGGTCGATTCCTGTGGTCGCAGGCTAACTTACCCCTT
TTAAGAAAAGGGTTTATGTATGCGTGCAAACGCGCAAAACGGAGTCCGTG
CCTCTTCGTGTTGATGTATGTGCGACAAAGGTGCTACATTCGCTTCAGGC
TGGGCCCGCGGTGGGTGTGGTTCGGACAAAAGCCCCGACGCTCTCGCGCG
TGTCGGGAGGAAGATGTTGGCGTTTTTTTTTTTTGCTTGGGTAGGTGCCC
ATCACGCTTGGTGTGTGGACCCTACGAGTGAAAGGGTCTTGTGGAGTCCG
ATTCTATTGATAAGTCTAAAGCTTTAGGCGAAGTGTATAAGTTTGTTCTT
GCTGTAATTTTGTTTGGTTCTGGGAAAAGTATGCAGCGTCGGAGAACGTT
TTTGAAGCGGGAGCTCGCGTGAAGTGTAGTCTGCTGTGTGTGTGTGTGTG
TGTGTGTATGTATGATGTGTTCCAGGCACGCACAATTTGCATGAAACGCC
ATCTGAACGAAAAACACACCTCGCGTTGCTCTCTCGGTGTTGTCTTCATG
CCGGCGTCTCTGTGCGGTGAATCTTTCGTCTGCCTTCCCCCGCCCCCGCC
AAACAACAACGTGTGCGTCAACCCTTCTATTGTAGTACCGTCCATGGCCC
CTACTGCCACTACTCTTGTCCACCTGACGACGCTGCCTGTGTTTGATTTG
CGACGACCACCACCACCCTTGTCCTTTGCCCTACCGCCCCAGGTGGTGCA
AAACCGCAGCACCAGCCGGCAAGTAATCATCACCAACCACTATTAGAAGG
GCTTTGCTCGCATCTACCTGTACAAGATTCCGATGACTTGCATGGCTGCC
TTGGGACTGGTGGGGAGTTACCGTGAGAGAAAAAAACTCTTGGCAGGCTG
GTGCAGTGGGGGTGCGAAGCCTTTTCACTGCAGCTGGCTGTAGGCTCTGT
TGCTTTTGTTGCTGTTGCGGAACGTGCTGGGTGGGGAGGAAAGCGCTCAG
ATTCATGAGTGCGGGCGTAGTTTTTCTTTGTATTTATGCGGGAAGAGGAG
GTATGAGGTTGAATACGTAGTGAAGTAGTGAAAGCACCATCTCTTCTTGA
ATGTATTTGTGCGGGTGTGTATTCGTATTGACAGCTTGCTTATGTAGCTT
TTCTTGATAAAAGGATCCTGAGGTTTTTTGTGTGCGCGTTAAACTTGTGA
AAAGGGAAAATCGGGTGGAAGAGGAACGATTCTGCGGGCAGGGTCAGATC
TGTGCGAGAGGCTGGTTCGTAAAGACATGCTCCCCCGTGTTGCTATGAAA
ATTCGGCGGCGCTCTGAGCGAGAATGGTGTGCTTGTACTTCTCTTTAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10327:1114..6961+

>mRNA_L-elsbetiae_contig10327.367.1 ID=mRNA_L-elsbetiae_contig10327.367.1|Name=mRNA_L-elsbetiae_contig10327.367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2148bp|location=Sequence derived from alignment at L-elsbetiae_contig10327:1114..6961+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCTGCACCAGGCGGCGGCGGCGGCGGCGGCGGCGCGAGCGGTGGT
GGTGGCGGTGGCAACGGTGGCGGTGCAGCGGTGGCAGCAGCAGCGATCGG
TACGTCCGGCTAGCGGGCGCCCACGTGACCGCCTTCCTGCGCACGGCTCT
GCTGATGGTCCACGTCTGCATGGAGACGCCGTCGCCCTTGCGCCAGGAGA
CAACACAAGCACCAGCAAAAATGGTGCTGCACCAGGCGGCGGCGGCGGCG
GCGGCGGCGCGAGCGGTGGTGGTGGCGGTGGCAACGGTGGCGGTGCAGCG
GTGGCAGCAGCAGCGATCGGTACGTCCGGCTAGCGGGCGCCCACGTGACC
GCCTTCCTGCGCACGGCTCTGCTGATGGTCCACGTCTGCATGGAGACGCC
GTCGCCCTTGCGCCAGGAGACAACACAAGCACCAGCAAAACAGCAGCAGC
AGCAGTAGCACCATCACCAACAGGTGCTGGTTCGGCGGACGCTGTCGAGG
GAGCGGGGAGGGAATCAGCGCCGGGAGCGGTGCGGGCTGACGGGGCGGCC
GTGGCGCTCCCTAGCGCGGACAACGCGTTCATGCCTCTGTGCCAATTTTT
CGGGTTTCCCGCCTCTGCCGAGGCCGTGCTGGCGGAACCTGGACTTGTGG
ATGCCGCTCGACGCAGCAGCAGCAGCAGTAGCACCATCACCAACAGGTGC
TGGTTCGGCGGACGCTGTCGAGGGAGCGGGGAGGGAATCAGCGCCGGGAG
CGGTGCGGGCTGACGGGGCGGCCGTGGCGCTCCCTAGCGCGGACAACGCG
TTCATGCCTCTGTGCCAATTTTTCGGGTTTCCCGCCTCTGCCGAGGCCGT
GCTGGCGGAACCTGGACTTGTGGATGCCGCTCGACGGTGGCTCGCTTGCG
TGGCGGATACCACAGCCTCCCACATGGCCAGGGCTAGTCCCCTCCCGGCG
GCTGCGGAGCAAATCAGCACCGGGGACTGGGTACTGCTTGGCAGGCGGGA
GGCGGTCTCGCGGCGCCTCTTCGACTTCCCGTCGCCCCTCAAGGTGGCTC
GCTTGCGTGGCGGATACCACAGCCTCCCACATGGCCAGGGCTAGTCCCCT
CCCGGCGGCTGCGGAGCAAATCAGCACCGGGGACTGGGTACTGCTTGGCA
GGCGGGAGGCGGTCTCGCGGCGCCTCTTCGACTTCCCGTCGCCCCTCAAG
ATCGAATTGGTGCGCCTGCCCCACGCCTACACGGAGTTGCACGCACAGGT
GTCCACCTCCACCTCCAGCAACAGCGGCGCCAACGGCGGCGAGGGCGGGG
CCGCCGGGGGCCCGGGAGTGGACCGCGTGGGCCACCCGGCGGTGTGCCTC
GTGTGCGGCAAGGTTCTGGACGCGAGCGGGCGCGGCGCTTGCACGAGGCA
CGCAAGGGACTGCGGCTGCGGGCTAGGTCTCTTGTTCCTGCTACAGATCG
AATTGGTGCGCCTGCCCCACGCCTACACGGAGTTGCACGCACAGGTGTCC
ACCTCCACCTCCAGCAACAGCGGCGCCAACGGCGGCGAGGGCGGGGCCGC
CGGGGGCCCGGGAGTGGACCGCGTGGGCCACCCGGCGGTGTGCCTCGTGT
GCGGCAAGGTTCTGGACGCGAGCGGGCGCGGCGCTTGCACGAGGCACGCA
AGGGACTGCGGCTGCGGGCTAGGTCTCTTGTTCCTGCTACAGGAGTGCGC
GGTTCTTCTTATCCACGGTCGGCGCGCGTCGTACTTTCCGTCCCCATACG
TGGACGCGTACGGCGAGCGGCAGCGGCACACCTTCCGGGGGAGGCCGCTG
TTTTTGGACCAGCGCCGGTACGACGTGGTTCGAGGGCTGTGGGCGAAGCA
CCTCGTGGCGCACGAGGAGTGCGCGGTTCTTCTTATCCACGGTCGGCGCG
CGTCGTACTTTCCGTCCCCATACGTGGACGCGTACGGCGAGCGGCAGCGG
CACACCTTCCGGGGGAGGCCGCTGTTTTTGGACCAGCGCCGGTACGACGT
GGTTCGAGGGCTGTGGGCGAAGCACCTCGTGGCGCACGAGGTGGTGCAAA
ACCGCAGCACCAGCCGGCAAGTAATCATCACCAACCACTATTAGGTGGTG
CAAAACCGCAGCACCAGCCGGCAAGTAATCATCACCAACCACTATTAG
back to top