mRNA_L-elsbetiae_contig1510.3658.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1510.3658.1 vs. uniprot
Match: D7G2Z3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z3_ECTSI) HSP 1 Score: 297 bits (761), Expect = 3.270e-82 Identity = 259/654 (39.60%), Postives = 325/654 (49.69%), Query Frame = 2
Query: 446 ASSLDYEFASSTRGLDILTGDQHIRAGVLVVALVRPTPTPGMPRAVASFPEKALMNLVTDLCDSRYLFSLPRHARLSPRAFQAVKTQLRVGDQRP----RSPSS-PPKTTSAARRDDPRSGDATGDS-GPVTLVVPFDRTTQGGPFPGGGNAAATGPLAAAVAGAPNSDRSVNNSKNHAATFREVGPGSAAAMAAAAEDAARKTGLALEQARATLAAAKKAEVTAAKAAVAAEGTAAVAHQXXXXXXXXXXXXXXXXXXXXXXXXXXXNRDNTSGSATFS---------------GGGPQKGSVNSGEGSPEMGGPRPAGERTTGSPLKISFLAPTHGELLEELAAATSYSSGDTETMTPAEIETMMSRLSSRRRYGHAVDTPGLSTPTARHQGGQEREKPRLLPHHVAKTPTSSNRRGLGWGGWRGGDD-PATSAASGSSSAVARAAGRVPPVADIKTRRL--SLMTRLGRSVEAAWRIPG-GSGKXXXXXXXXXXXXXXXXXXXXXXXXXEGQEETEGVRSLLFSGPGTPGLVVDLWSPGPIFLRHVEEFGDSGCMDAAYALGLWRAGSSFEVVKDATLSSTAPSASKIQSDVYGASRRAFTSEEAMANKLSVSGGECLRNEAVANTASIYSAFLLQVANVYRRPWSEMAGR 2332
A L E ++TR +D L G ++IR GVL+ ALVRP P+P +PR +A+FP KALMNLVTDLC++RYL +LP ARLSPRA QAV QLR + P +SP S PP T+ A PR+ T D+ GP+TLVVPF + FP A + P P ++N+ N A S AA+DAAR T LA L +A A T E +A Q + + +S + T+S GGG V G + +G G + +PLKISFLAP + G ++T E T+ + RR G AVD+P ++ T Q E+++ L H A S +R GLG GGW GG D P T+ AS S S +P D +L + RLG S PG G+G XX Q+E + V LLFSGPGTPGLVVDLWSPGPIFLRHVEEFGD+GCM+AAYALGLWRAGSSF+VV+ A L++ QS Y RRAFTS++ V GG CLR++AVA+TASIYSAFL QV NVYRRPWS GR
Sbjct: 829 AMVLGGEDLAATREMDALKGAKYIRGGVLIAALVRPPPSPDVPRMIATFPRKALMNLVTDLCETRYLLTLPASARLSPRASQAVSAQLRSNRRPPYPVRQSPDSRPPPETNNAGTGGPRAPRRTPDTLGPITLVVPFKTAGEAPQFPKEREAGTSAPYPGDSP--PAGSGGISNTSNKDALPGMGSVSSNVVNDIAAQDAARATSLASGHVGVALGSAPSAGGTIGSG----ENSAVGIGQAAVKDSAAASAGGWGNGFGITSFSDTGSNEASSRTRTYSTALGGDAVGSRLRDQGGGVLPVEVEGGT-TRSVGAGAGVGRQRAATPLKISFLAPA------------GRAPGSNGSVTGRETRTLSRH--NVRRQGPAVDSPRPASVT---QWRTEQQRRGPLESHAAIPSKSGDRAGLGRGGWEGGPDVPVTTTASASLS--------LPGFDDDGEAQLIRDVRRRLGSS-------PGDGAGGQASGSVSDSAVAVGGXXVEME------QDEADWVWELLFSGPGTPGLVVDLWSPGPIFLRHVEEFGDTGCMEAAYALGLWRAGSSFQVVQGARLTTXXXXXXXXQSHDYSRDRRAFTSDQEE-RLFRVPGGACLRSDAVASTASIYSAFLRQVENVYRRPWSRRTGR 1436
BLAST of mRNA_L-elsbetiae_contig1510.3658.1 vs. uniprot
Match: A0A6H5L1U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U3_9PHAE) HSP 1 Score: 205 bits (522), Expect = 2.390e-51 Identity = 225/654 (34.40%), Postives = 288/654 (44.04%), Query Frame = 2
Query: 446 ASSLDYEFASSTRGLDILTGDQHIRAGVLVVALVRPTPTPGMPRAVASFPEKALMNLVTDLCDSRYLFSLPRHARLSPRAFQAVKTQLRVGDQRP---RSP--------SSPPKTTSAARRDDPRSGDATGDS-GPVTLVVPFDRTTQGGPFPGGGNAAATGPLAAAVAGAPNSDRSVNNSKNHAATFREVGPGSAAAMAAAAEDAARKTGLALEQARATLAAAKKA-------EVTAAKAAVAAEGTAAVAHQXXXXXXXXXXXXXXXXXXXXXXXXXXXN------------RDNTSGSATFSGGGPQKGSVNSGEGSPEMGGPRPAGERTTGSPLKISFLAPTHGELLEELAAATSYSSGDTETMTPAEIETMMSRLSSRRRYGHAVDTPGLSTPTARHQGGQEREKPRLLPHHVAKTPTSS-NRRGLGWGGWRGGDD-PATSAASGSSSAVA-RAAGRVPPVADIKTRRLSLM-----TRLGRSVEAAWRIPGGSGKXXXXXXXXXXXXXXXXXXXXXXXXXEGQEETEGVRSLLFSGPGTPGLVVDLWSPGPIFLRHVEEFGDSGCMDAAYALGLWRAGSSFEVVKDATLSSTAPSASKIQSDVYGASRRAFTSEEAMANKLSVSGGECLRNEAVANTASIYSAFLLQV 2290
A LD + ++TR +D G +++R GVL+VAL RP P P +PR +A+FP KALMNLVTDLC++RYL +LP ARL+PRA QAV QLR + P R P S PP ++A PR+ T D+ GP TLVVPF+ + FP A + A ++ P ++N+ N S A AAAEDAAR T LA L +A A E +A AA +AVA + RD G G S SG G AG R +PLKISFLAP ++ S + DT T++ + RR G VD+P ++ T + + Q R P P +A P+ +R GLG GG GG D P T+ AS S S G + D++ R S +R SV + GG G +E + V LLFSGPGTPGLVVDLWSPGP+FLRHVE VV+ A L+ TA +QS Y RRAFTS++ V GG CLR+EAVA+TASIYS FL QV
Sbjct: 763 AMVLDGDDLTATREMDAQKGAKYVRGGVLIVALARPPPRPDVPRMIATFPRKALMNLVTDLCETRYLLALPASARLNPRASQAVSAQLRSNRRPPYPVRQPYPVWQSQDSRPPSKPNSAGTGSPRAPRRTPDTLGPFTLVVPFETAGEAPQFPEEREAGTSASYAWSLYSPPADSGGISNTSNTGELPGIGSVSSTVANDAAAEDAARATSLASRHIGVALGSAPTAGGAIGSGEKSAVGLGQAAVKDSAVASASGWGNGFGITSFSNTGSDETSSRMRGYSTALGGDAVRSRLRDRGGGMLPVEVEGGTIRSAGSGAG---------AGRRRAATPLKISFLAPA----VKAPGRNGSVTGRDTRTLSRHYV----------RRQGPTVDSPRPASVT-QWRTEQLRRGP---PESLATIPSKGGDRAGLGRGGGEGGPDVPITTTASASLSLPGFDDDGEAQLIRDVRRRLGSSPGDGAGSRASGSVSDSAVAAGGGGVF---------------------------DEADWVWELLFSGPGTPGLVVDLWSPGPLFLRHVE------------------------VVQGARLTPTAAVPPPLQSHDYSRDRRAFTSDQEE-RLFRVPGGACLRSEAVASTASIYSVFLRQV 1337 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1510.3658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1510.3658.1 >prot_L-elsbetiae_contig1510.3658.1 ID=prot_L-elsbetiae_contig1510.3658.1|Name=mRNA_L-elsbetiae_contig1510.3658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=646bp MRRSGTGLRQASSLDYEFASSTRGLDILTGDQHIRAGVLVVALVRPTPTPback to top mRNA from alignment at L-elsbetiae_contig1510:18777..24945+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1510.3658.1 ID=mRNA_L-elsbetiae_contig1510.3658.1|Name=mRNA_L-elsbetiae_contig1510.3658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6169bp|location=Sequence derived from alignment at L-elsbetiae_contig1510:18777..24945+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1510:18777..24945+ >mRNA_L-elsbetiae_contig1510.3658.1 ID=mRNA_L-elsbetiae_contig1510.3658.1|Name=mRNA_L-elsbetiae_contig1510.3658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3876bp|location=Sequence derived from alignment at L-elsbetiae_contig1510:18777..24945+ (Laminarionema elsbetiae ELsaHSoW15)back to top |