mRNA_L-elsbetiae_contig15098.3652.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15098.3652.1
Unique NamemRNA_L-elsbetiae_contig15098.3652.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15098.3652.1 vs. uniprot
Match: A0A6H5KRQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ1_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.150e-5
Identity = 26/37 (70.27%), Postives = 26/37 (70.27%), Query Frame = 3 
Query:  336 PALSRIRGGVRLPSPPRDGGRSLGGHLNWLSTAAGSA 446
            PA SRIRGGVRLPSP R GG SL G LNWL     SA
Sbjct: 1013 PAPSRIRGGVRLPSPSRGGGNSLQGRLNWLDNGGPSA 1049
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15098.3652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRQ1_9PHAE5.150e-570.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15098contigL-elsbetiae_contig15098:1131..2077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size555
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.1151655-CDS-L-elsbetiae_contig15098:1130..14491622815613.1151655-CDS-L-elsbetiae_contig15098:1130..1449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15098 1131..1449 +
1691682991.3629014-CDS-L-elsbetiae_contig15098:1130..14491691682991.3629014-CDS-L-elsbetiae_contig15098:1130..1449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15098 1131..1449 +
1622815613.1257093-CDS-L-elsbetiae_contig15098:1841..20771622815613.1257093-CDS-L-elsbetiae_contig15098:1841..2077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15098 1842..2077 +
1691682991.3768032-CDS-L-elsbetiae_contig15098:1841..20771691682991.3768032-CDS-L-elsbetiae_contig15098:1841..2077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15098 1842..2077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15098.3652.1prot_L-elsbetiae_contig15098.3652.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15098 1131..2077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15098.3652.1

>prot_L-elsbetiae_contig15098.3652.1 ID=prot_L-elsbetiae_contig15098.3652.1|Name=mRNA_L-elsbetiae_contig15098.3652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
HTLTPVALTRRRLVKRGLGRTPAGSSSKSPRSTCTGTANSPTNSPTNSTS
RNGTSSPCRRARGRVLSRSRNGWTTRRGIGKRRGPGRLFRRLRTSSSLEA
QALAAAGRGRANLPCPGSGEVFAFRRRRATAADRWGDTSTGSAPPPAAPQ
PAAAAAAAAAATAASAAAASAASPIAAAKPKPHPR
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mRNA from alignment at L-elsbetiae_contig15098:1131..2077+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15098.3652.1 ID=mRNA_L-elsbetiae_contig15098.3652.1|Name=mRNA_L-elsbetiae_contig15098.3652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=947bp|location=Sequence derived from alignment at L-elsbetiae_contig15098:1131..2077+ (Laminarionema elsbetiae ELsaHSoW15)
CACACGCTCACTCCGGTAGCCCTGACGCGTCGACGGTTGGTCAAGAGAGG
GCTGGGGCGGACGCCCGCGGGCAGCAGCAGCAAGTCGCCGCGCAGCACCT
GCACCGGCACCGCCAACAGCCCCACCAACAGCCCCACCAACAGCACCAGC
AGGAACGGCACCAGCAGCCCTTGTCGCCGAGCGCGTGGCAGGGTGCTGTC
CCGTTCTCGCAACGGCTGGACCACTCGCCGGGGTATAGGGAAGCGTCGGG
GGCCGGGGCGCCTGTTCCGACGACTTCGAACGAGTTCATCGCTAGAAGCG
CAAGCGTTGGCGGCGGCAGGTAAGAATAGAATATCGAGATGGCGGAGCGG
GGGGGGGGGGGTGTCTCCTTTTGAACCTTCGCCGTAGCTCTTAGGGCGCT
CACGGCATATCTCACTCGAGAGAGAGAGAGAGGGAGGTAGAGGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAACCG
GCACCTCTCCTTGCAGAACTACAAAGCTTTTTCGGGTCTCGGTAGAAAAG
AAAGAAAGCACCCGCACCGGGTAACCGCTTCACAAAACGAACGGTAGCAT
TAGAACCCACGCCGGTTTCCCACGCTAAATATTTTCCTATGCCCGCCCTC
TCGTCTTCTTTCTTTCACCCCCCGCGTTCCTTCGTGCTTCTCTTCTGCTC
GCGCGAAACAGGGAGGGGGCGTGCAAACCTGCCCTGTCCAGGATCCGGGG
AGGTGTTCGCCTTCCGTCGCCGCCGCGCGACGGCGGCCGATCGCTGGGGG
GACACCTCAACTGGCTCAGCACCGCCGCCGGCAGCGCCACAACCAGCGGC
GGCGGCGGCGGCGGCAGCGGCGGCGACGGCGGCGTCAGCAGCGGCGGCCT
CAGCGGCATCACCCATCGCAGCGGCAAAACCAAAGCCGCACCCCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15098:1131..2077+

>mRNA_L-elsbetiae_contig15098.3652.1 ID=mRNA_L-elsbetiae_contig15098.3652.1|Name=mRNA_L-elsbetiae_contig15098.3652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig15098:1131..2077+ (Laminarionema elsbetiae ELsaHSoW15)
CACACGCTCACTCCGGTAGCCCTGACGCGTCGACGGTTGGTCAAGAGAGG
GCTGGGGCGGACGCCCGCGGGCAGCAGCAGCAAGTCGCCGCGCAGCACCT
GCACCGGCACCGCCAACAGCCCCACCAACAGCCCCACCAACAGCACCAGC
AGGAACGGCACCAGCAGCCCTTGTCGCCGAGCGCGTGGCAGGGTGCTGTC
CCGTTCTCGCAACGGCTGGACCACTCGCCGGGGTATAGGGAAGCGTCGGG
GGCCGGGGCGCCTGTTCCGACGACTTCGAACGAGTTCATCGCTAGAAGCG
CAAGCGTTGGCGGCGGCAGCACACGCTCACTCCGGTAGCCCTGACGCGTC
GACGGTTGGTCAAGAGAGGGCTGGGGCGGACGCCCGCGGGCAGCAGCAGC
AAGTCGCCGCGCAGCACCTGCACCGGCACCGCCAACAGCCCCACCAACAG
CCCCACCAACAGCACCAGCAGGAACGGCACCAGCAGCCCTTGTCGCCGAG
CGCGTGGCAGGGTGCTGTCCCGTTCTCGCAACGGCTGGACCACTCGCCGG
GGTATAGGGAAGCGTCGGGGGCCGGGGCGCCTGTTCCGACGACTTCGAAC
GAGTTCATCGCTAGAAGCGCAAGCGTTGGCGGCGGCAGGGAGGGGGCGTG
CAAACCTGCCCTGTCCAGGATCCGGGGAGGTGTTCGCCTTCCGTCGCCGC
CGCGCGACGGCGGCCGATCGCTGGGGGGACACCTCAACTGGCTCAGCACC
GCCGCCGGCAGCGCCACAACCAGCGGCGGCGGCGGCGGCGGCAGCGGCGG
CGACGGCGGCGTCAGCAGCGGCGGCCTCAGCGGCATCACCCATCGCAGCG
GCAAAACCAAAGCCGCACCCCCGGGGAGGGGGCGTGCAAACCTGCCCTGT
CCAGGATCCGGGGAGGTGTTCGCCTTCCGTCGCCGCCGCGCGACGGCGGC
CGATCGCTGGGGGGACACCTCAACTGGCTCAGCACCGCCGCCGGCAGCGC
CACAACCAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGACGGCGGCGTCA
GCAGCGGCGGCCTCAGCGGCATCACCCATCGCAGCGGCAAAACCAAAGCC
GCACCCCCGG
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