mRNA_L-elsbetiae_contig15093.3651.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15093.3651.1
Unique NamemRNA_L-elsbetiae_contig15093.3651.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15093.3651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15093contigL-elsbetiae_contig15093:969..2086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size491
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.0675733-CDS-L-elsbetiae_contig15093:968..11601622815613.0675733-CDS-L-elsbetiae_contig15093:968..1160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15093 969..1160 -
1691682991.3424232-CDS-L-elsbetiae_contig15093:968..11601691682991.3424232-CDS-L-elsbetiae_contig15093:968..1160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15093 969..1160 -
1622815613.0791056-CDS-L-elsbetiae_contig15093:1789..20861622815613.0791056-CDS-L-elsbetiae_contig15093:1789..2086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15093 1790..2086 -
1691682991.3539515-CDS-L-elsbetiae_contig15093:1789..20861691682991.3539515-CDS-L-elsbetiae_contig15093:1789..2086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15093 1790..2086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15093.3651.1prot_L-elsbetiae_contig15093.3651.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15093 969..2086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15093.3651.1

>prot_L-elsbetiae_contig15093.3651.1 ID=prot_L-elsbetiae_contig15093.3651.1|Name=mRNA_L-elsbetiae_contig15093.3651.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
GAGEAGVGSRARGGRVGRAFLSLVRRLPVPRVRPPFPPATAVTAAAAADA
DADAAAAAAVSGGGPRGGSPAAGPLTSSAAAREEEEEAAREGRDWWKDEV
ALEEEGFEQQAVAAAAAAATLTAAGTRAVGRAGRRRGPVAGGSSGWVWWW
GRGRRVSLERLVE
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mRNA from alignment at L-elsbetiae_contig15093:969..2086-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15093.3651.1 ID=mRNA_L-elsbetiae_contig15093.3651.1|Name=mRNA_L-elsbetiae_contig15093.3651.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1118bp|location=Sequence derived from alignment at L-elsbetiae_contig15093:969..2086- (Laminarionema elsbetiae ELsaHSoW15)
GGTGCGGGAGAAGCAGGAGTAGGGAGTAGGGCAAGGGGTGGGCGCGTCGG
CCGCGCGTTTCTTTCGTTGGTTCGGCGTCTGCCGGTGCCCCGGGTGCGGC
CGCCGTTTCCCCCCGCCACGGCCGTCACCGCCGCCGCTGCTGCTGATGCT
GATGCTGATGCTGCTGCAGCGGCGGCGGTCAGCGGCGGCGGTCCTCGTGG
TGGCAGCCCTGCGGCGGGTCCGCTCACGAGCTCGGCAGCGGCGCGGGAGG
AGGAGGAGGAAGCCGCCCGGGAGGGGCGAGACTGGTGGAAGGATGAGGTG
AGAGTTCCGGAAGCGTGAGGTTGCTGCTGCTGCTGTTGTTGTTGTGGAAG
GACGAGGTGAGAGTTTTGGAAGCGGGAAGTTGTTGTTGTTACAGTTGTTG
GGAGCCATCGGAAGGTGCGAAAAGGAGAACACACGTGTCGGTGGTTGATT
GGCCAAAAGGCCGGCGGCCAAGCATTAGTATCTATGTATACCTAGCTGCT
GTAAAATAGAGGCCACCGGAAAAGGCGACTCCACGCGCCGAAGCTGATCT
AGGTATGTATGCGATTTTCTCCTACACATTGGCTTTTCCGTTCCACGTCT
GCACTACGTACTTTTTCAAAGTAGGCGTTTAGTTAGTTGGGAAATCGAGA
ACGGACTGTCAACTCTAAGCTCCTCCTCTTCCTCCCCCCCCGCCCCTGCC
GCCGGTTTTTATTTTTATCGTCCGCCGGCTGTTGGTCTTCCTCCCCCGTC
AAATCTGCCGCCGCCACCGCCACCGCCTCTTTTCTCCTCATTTGTTGCCG
GTTCTTGCTCTCCCCCCTCTGTCAACTCCGCCGCCGCCGCCGCCGCCGCC
GCCGCCGCCGCCGGCTCTTTCATTCTCCTCATCTGTTGCCGGCTCGCGGT
CTTCCGACACCGTCTCATCTGTCAAGGTGGCCCTTGAGGAGGAAGGGTTC
GAGCAGCAGGCCGTAGCGGCGGCGGCGGCAGCGGCCACGCTTACCGCCGC
GGGCACCCGTGCGGTCGGCCGAGCGGGCCGGAGAAGGGGTCCCGTGGCTG
GGGGAAGCTCTGGGTGGGTCTGGTGGTGGGGCCGCGGCAGGCGGGTCTCT
CTGGAGAGGCTGGTGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15093:969..2086-

>mRNA_L-elsbetiae_contig15093.3651.1 ID=mRNA_L-elsbetiae_contig15093.3651.1|Name=mRNA_L-elsbetiae_contig15093.3651.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig15093:969..2086- (Laminarionema elsbetiae ELsaHSoW15)
GGTGCGGGAGAAGCAGGAGTAGGGAGTAGGGCAAGGGGTGGGCGCGTCGG
CCGCGCGTTTCTTTCGTTGGTTCGGCGTCTGCCGGTGCCCCGGGTGCGGC
CGCCGTTTCCCCCCGCCACGGCCGTCACCGCCGCCGCTGCTGCTGATGCT
GATGCTGATGCTGCTGCAGCGGCGGCGGTCAGCGGCGGCGGTCCTCGTGG
TGGCAGCCCTGCGGCGGGTCCGCTCACGAGCTCGGCAGCGGCGCGGGAGG
AGGAGGAGGAAGCCGCCCGGGAGGGGCGAGACTGGTGGAAGGATGAGGGT
GCGGGAGAAGCAGGAGTAGGGAGTAGGGCAAGGGGTGGGCGCGTCGGCCG
CGCGTTTCTTTCGTTGGTTCGGCGTCTGCCGGTGCCCCGGGTGCGGCCGC
CGTTTCCCCCCGCCACGGCCGTCACCGCCGCCGCTGCTGCTGATGCTGAT
GCTGATGCTGCTGCAGCGGCGGCGGTCAGCGGCGGCGGTCCTCGTGGTGG
CAGCCCTGCGGCGGGTCCGCTCACGAGCTCGGCAGCGGCGCGGGAGGAGG
AGGAGGAAGCCGCCCGGGAGGGGCGAGACTGGTGGAAGGATGAGGTGGCC
CTTGAGGAGGAAGGGTTCGAGCAGCAGGCCGTAGCGGCGGCGGCGGCAGC
GGCCACGCTTACCGCCGCGGGCACCCGTGCGGTCGGCCGAGCGGGCCGGA
GAAGGGGTCCCGTGGCTGGGGGAAGCTCTGGGTGGGTCTGGTGGTGGGGC
CGCGGCAGGCGGGTCTCTCTGGAGAGGCTGGTGGAGGTGGCCCTTGAGGA
GGAAGGGTTCGAGCAGCAGGCCGTAGCGGCGGCGGCGGCAGCGGCCACGC
TTACCGCCGCGGGCACCCGTGCGGTCGGCCGAGCGGGCCGGAGAAGGGGT
CCCGTGGCTGGGGGAAGCTCTGGGTGGGTCTGGTGGTGGGGCCGCGGCAG
GCGGGTCTCTCTGGAGAGGCTGGTGGAG
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