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Homology
BLAST of mRNA_L-elsbetiae_contig10323.365.1 vs. uniprot
Match: A0A6H5KZ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ31_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 2.200e-12 Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 3
Query: 1128 QQQDMVRMCQHPGCRRAPCYAWEGNKKASFCASHRLPGQVNVVSKR 1265
Q Q++VR+CQH GCRR PCY WEG K+A+FCA+H LPGQVNVVS R
Sbjct: 415 QPQELVRVCQHLGCRRGPCYGWEGEKRATFCAAHGLPGQVNVVSPR 460
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 2798 |
Cds size | 1653 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815260.86124-UTR-L-elsbetiae_contig10323:1612..2548 | 1622815260.86124-UTR-L-elsbetiae_contig10323:1612..2548 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10323 1613..2548 - |
1691682802.7370071-UTR-L-elsbetiae_contig10323:1612..2548 | 1691682802.7370071-UTR-L-elsbetiae_contig10323:1612..2548 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10323 1613..2548 - |
1622815260.9042897-UTR-L-elsbetiae_contig10323:5730..5939 | 1622815260.9042897-UTR-L-elsbetiae_contig10323:5730..5939 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10323 5731..5939 - |
1691682802.772647-UTR-L-elsbetiae_contig10323:5730..5939 | 1691682802.772647-UTR-L-elsbetiae_contig10323:5730..5939 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10323 5731..5939 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815260.8716462-CDS-L-elsbetiae_contig10323:2548..2714 | 1622815260.8716462-CDS-L-elsbetiae_contig10323:2548..2714 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10323 2549..2714 - |
1691682802.7483323-CDS-L-elsbetiae_contig10323:2548..2714 | 1691682802.7483323-CDS-L-elsbetiae_contig10323:2548..2714 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10323 2549..2714 - |
1622815260.8839276-CDS-L-elsbetiae_contig10323:3051..4483 | 1622815260.8839276-CDS-L-elsbetiae_contig10323:3051..4483 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10323 3052..4483 - |
1691682802.7559838-CDS-L-elsbetiae_contig10323:3051..4483 | 1691682802.7559838-CDS-L-elsbetiae_contig10323:3051..4483 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10323 3052..4483 - |
1622815260.8931253-CDS-L-elsbetiae_contig10323:5675..5730 | 1622815260.8931253-CDS-L-elsbetiae_contig10323:5675..5730 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10323 5676..5730 - |
1691682802.7639143-CDS-L-elsbetiae_contig10323:5675..5730 | 1691682802.7639143-CDS-L-elsbetiae_contig10323:5675..5730 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10323 5676..5730 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10323.365.1 >prot_L-elsbetiae_contig10323.365.1 ID=prot_L-elsbetiae_contig10323.365.1|Name=mRNA_L-elsbetiae_contig10323.365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=551bp
MEEGRGAMAATGLSFSSAGKQHVSHGTYGGNGSVSRGRDHQSSTPNPFVD AEVGAGFVGDSGRRLAGGGAVSGVGGGSHNVRRHSSNRTDATAMASIRGA GTDLSPRTEEIRSFPAGFAASDVSGMITGMTTARLVGVNASNPIDMFGRA MNAAAGATAAAPGGKTSMGMVGLANGGAGGVRIGGALPPKGIATEAALRE GGGGGSGGGGGGGSHVSRGVKAEAGQRGMRHTGGIGWGAKPANGRIDDIL GDGGGGASKRRKITTAAPASAAPTLLPLPPPKSGGRGKDTPAAPASSTNG LPSSFSQQQDMVRMCQHPGCRRAPCYAWEGNKKASFCASHRLPGQVNVVS KRCNHEGCRLGPSYAEPGEKKPRYCAGHRLPGHVNVVSPRCQHEGCSRGP SYGQGGDARKPIFCAGHRQYGMVNVVSPQCQDPSCSKGPSYGFEGERASF CAKHKQDGQVNVVSRRCKMEHCRKGPSYGEEGDRRASYCAKHKQDGMVNI VSRTRKCCTPGCNKYPNFGREGDRKASFCALHRREGDIDLANARFLTRAT * back to topmRNA from alignment at L-elsbetiae_contig10323:1613..5939- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10323.365.1 ID=mRNA_L-elsbetiae_contig10323.365.1|Name=mRNA_L-elsbetiae_contig10323.365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4327bp|location=Sequence derived from alignment at L-elsbetiae_contig10323:1613..5939- (Laminarionema elsbetiae ELsaHSoW15) CGACAGGGACAGGGAGCACGGGCCGGAAGACGACACAGATAAAGAGATCA
AGAGAGGGAAAAAACAGCAGTGCAGATATCGTATTCGCGGTGCAAAGCCG
GGTGGCGGTACTATCGGGAGGCTGAAGAGAGAGAAAATAGAGGACCGAGC
AGCTTTGGAGGCTTCTCCGCCTGCTGAATCAACCCGCCAGCACATCGGCC
ACGGGTTAGATGGAGGAAGGCAGGGGCGCGATGGCAGCAACCGGACTTTC
GTTCTCGTCAGCAGGTTCGTCTTTATTTGGGGGGCTTTCAAAAACTCGGG
TGCTTGTGTCCCGTGCGGTTCCCTCGGTCCACCACTGCATGTTTGATGAC
GTCCTTCGTCAAGAACACAGTCATGGATGGGAGTACTCGTAGGCACATGC
TGTGTTGCAGAGGTGGAAACCATAGGTGAAACATACTGGGTGCATCTGGA
GAGCACACTCATCTACGAGACTATGCATGCTATATATCTCACTCCTGCTG
CAATAGATCTTTCCCCACACCTGTCAGTTTCATCTCCGAGCCAGCATCAA
GCGCGATCGGCGCATCCGGAACGACGCACTGCCTGTTGTCTCCATGGCAG
CTTGGCGCACGACTACTGTTGTTTTCACAGATCTGCAGACCGTTTACCGC
TTCCCTTTTTTCTCTCCGTCTCTCTGCCGTGTTTTGGGGGGTTTCCGTTT
CGTTATGCCAAGTTGCCAAGGGAGCCAAGTAAAAATTCTCTCGTTAAAGG
CCGGGATGTGCTCTTTTTGAGATGTACCTATTGATCCGGTTGCTTTCGGA
AAGTTAAATGTTCTGCGATTAAATATCGTGGATCATTAGCAATATAGATA
CAAGTTCCCCGTCAGAAGTTGCCCATGACCGGAACAAAGCAGGGGGTAAA
GCAAGAGAACAACAGTGTTGACTGCTAAGTATTCGGTTGCGCAACACCAT
GAGTTGCGTGTCACACTAAAGAGTCAGAACTGGCGTGCGTCGCCACGTTC
GCCACGTGCGTCGCCAGCCTGAAAAGTCTCCTGGAAAGCCTGGTTCCAGT
GCGTGGCTTGGTCAACAGCCCACATACCCTGCACCCCAGGGAAAACTCAA
TCTGTATATATTTAGCCATGCTTTCGCTTTCTCTTGATGCAATGGCAGTT
GCACTCATGGCAATCGCATAACCGTGGGGTAGTATTTCCGGGTGATGGCA
TCAGCCAACCCCCGAAGCCGCCTCTGCGAAAAAGTATGTCGCAGATACAT
CCATACAAATATGCTGCAAATAAATATGTATGTATTTATGTGTGTACATG
CGCGGACACCTACATATATTTTGCTTTTGCTATCGTGCACAATGCTTTTT
CTACGATTCCGCCTCGGGTTGGCAGAGCCCACCCTGCTGGACAAAATATT
TTATCTGTTCACCTGATCCGTTTCCCCCCATACCCGCTCTGCTTTCTCAC
CGACAGGAAAGCAGCACGTGTCTCACGGAACATACGGAGGGAACGGCAGT
GTTTCGCGTGGGAGAGATCACCAAAGCAGCACTCCAAACCCATTTGTGGA
TGCTGAGGTAGGCGCCGGCTTTGTAGGAGACAGCGGCAGGCGGCTGGCGG
GCGGAGGCGCGGTGAGCGGAGTAGGGGGCGGAAGCCATAACGTGCGCCGG
CACTCTAGCAACCGCACCGACGCTACCGCGATGGCCTCTATTCGCGGCGC
AGGGACCGACCTTTCTCCAAGGACAGAGGAAATCAGGAGCTTCCCCGCGG
GTTTCGCCGCGTCGGACGTGAGTGGCATGATCACGGGCATGACGACGGCC
AGGCTGGTTGGGGTAAACGCATCAAACCCAATTGATATGTTTGGAAGAGC
CATGAACGCAGCAGCAGGAGCAACAGCAGCAGCGCCTGGCGGGAAAACGT
CGATGGGGATGGTGGGCCTGGCCAACGGCGGGGCAGGCGGAGTGAGGATA
GGCGGAGCGTTGCCACCAAAAGGCATCGCCACAGAAGCAGCGTTACGAGA
AGGAGGTGGCGGCGGCAGCGGAGGAGGAGGAGGAGGAGGAAGCCATGTAA
GTCGTGGGGTAAAAGCAGAGGCCGGTCAGAGAGGAATGAGACACACGGGT
GGTATCGGCTGGGGAGCAAAACCGGCGAACGGAAGAATCGACGACATTCT
CGGCGATGGCGGCGGTGGGGCAAGCAAGCGTAGAAAAATAACCACAGCTG
CGCCGGCTAGCGCCGCCCCAACCTTGCTGCCACTGCCGCCGCCGAAGAGC
GGCGGTAGAGGCAAAGACACCCCTGCGGCTCCCGCTAGCTCTACCAACGG
CCTTCCGTCTTCCTTCAGCCAGCAACAAGATATGGTGCGAATGTGTCAAC
ACCCCGGCTGCCGTCGAGCCCCCTGCTACGCCTGGGAAGGCAACAAGAAA
GCATCGTTCTGCGCGAGCCACCGTCTGCCCGGACAAGTGAACGTCGTCAG
CAAGCGGTGCAACCACGAAGGGTGCAGGCTAGGCCCGAGCTACGCCGAGC
CCGGCGAAAAGAAGCCGAGGTACTGCGCCGGGCACCGCCTTCCGGGGCAC
GTGAACGTCGTCTCGCCCAGGTGCCAACACGAGGGCTGCTCCCGAGGGCC
GTCGTATGGACAAGGTGGGGACGCGCGGAAACCTATCTTCTGCGCCGGGC
ACAGGCAGTACGGGATGGTCAACGTCGTGAGCCCTCAGTGCCAGGACCCG
AGCTGCTCGAAGGGGCCCTCGTACGGCTTCGAGGGCGAGAGGGCGTCGTT
CTGCGCCAAGCACAAGCAGGACGGCCAGGTGAATGTCGTGAGCAGGAGGT
GCAAGATGGAGCACTGCAGGAAGGGGCCGTCGTACGGGGAGGAAGGCGAC
CGCCGGGCTTCGTACTGCGCGAAGCATAAGCAAGACGGGTAAGCGCTAAC
AGCTCCGCGCAGCAGCTGTGCCTACATATGTAGCCGAGAGGCTTCTGTGC
CGTATGGTCTCGTGCCATTTTTGTTGGAGCCATTCTTCGCTTTCTGGTGG
TTTCGGGACCTTTTTTTATATTTGCTGCTCGGAGCCTGCCCCCCTCCCCC
CCTCTCCCCGACCTTGATTTACCTCGGTTCACCCAGGTGTAAAGTGACCA
ACTTCGCTGCTTCTCTCTCACGAATCTATCGTTTTTACCCAACACATCAC
GTCGCGCACGCGCCTCTGCGCCCTGGCCCTCCTCTGCCCGCGCGCTCGTG
CTTGTTTGACGCTGTTTGAATGAAGGATGGTCAACATCGTGAGCCGCACC
CGCAAGTGCTGCACCCCCGGGTGCAACAAATACCCCAACTTCGGGAGGGA
AGGAGACCGGAAAGCTAGCTTCTGCGCCCTCCACAGGCGAGAGGGGGACA
TCGACCTCGCCAACGCACGGTTCTTGACGCGGGCGACGTAGTGCGGGCGT
ACGGGGGCGTGCAGATTGTATTGACGGTGGGGGCGGGAGCCGGTTTCCCC
CTCGTCGCGCTGTCGGGACACCCAAGTACGACATGCATGCAAAGCTGGTC
TATGCGGCTCGAAATTAGTTGTTTGATCAGGATTGTCGTTTCGATATCTT
TGCTGTACCAGTCTGAGTTTATGTACGCTTTCCAGCTTGGTTTTCTGTTC
TTGTGTGTCTTTTCTGTGTGGAGGAATTCAATGGTATGCCAATGCGCCAG
CCAGGCCAGAGGTACACTCACGCTCTCTTCGAGACGACAACTCAGCAGAG
CGGATGGTAATGGCACGCGTGCTGAATGCCCATGAGCACACCGCGACCGG
TGCAGCATACGAGTGGTAGACGTTCGGTTGTGTGGTGCGGTGGTCCTTGT
TGCAGCGACGCAAGTGCTGTGGCCGCGACAGTAGTTGCGTCTTTTTGAGG
TGTGGTAGATGTTCAAACCGTTTGTGTCCTCACCAAGAGCATAACATCCA
ATTCTGCGACAGAACTCAGTTTTGGGGGGCCGTGTCGATACGGGCTCTTG
GCTCGGATAGTTTGGTATCTACAACCGTTGTTGTTGTCGTTTGTTACCAG
AACCGTTCCAGTAAACCGTAGTTACCGAGGGGATAGGAAATGTTCGTCAC
GTGAACCATGCTCGTTGAGCAGGTGCTAGATATGAGTTTTGTTTTCTCTG
TCATTTCGGGCCTTTTTTGGTTTGTGCGGCATTGGTGGTTGTGTGTAACA
ATTACGCCGTAGATGTCACGTTGAGCGCTACGAGGCGTGTGTGACAAGCC
GCCTTAAGCCGACGGTGTGGGCGAAGTGGTCCTTCCAGAAAAATGTGCAA
AGATTTGTATTTAGTCGTAAAATGATTGAACATGTGTGACGATCCAGATT
GGGCAAGAGCAATGAAGTGGAACCCTG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10323:1613..5939- >mRNA_L-elsbetiae_contig10323.365.1 ID=mRNA_L-elsbetiae_contig10323.365.1|Name=mRNA_L-elsbetiae_contig10323.365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3306bp|location=Sequence derived from alignment at L-elsbetiae_contig10323:1613..5939- (Laminarionema elsbetiae ELsaHSoW15) ATGGAGGAAGGCAGGGGCGCGATGGCAGCAACCGGACTTTCGTTCTCGTC AGCAGATGGAGGAAGGCAGGGGCGCGATGGCAGCAACCGGACTTTCGTTC TCGTCAGCAGGAAAGCAGCACGTGTCTCACGGAACATACGGAGGGAACGG CAGTGTTTCGCGTGGGAGAGATCACCAAAGCAGCACTCCAAACCCATTTG TGGATGCTGAGGTAGGCGCCGGCTTTGTAGGAGACAGCGGCAGGCGGCTG GCGGGCGGAGGCGCGGTGAGCGGAGTAGGGGGCGGAAGCCATAACGTGCG CCGGCACTCTAGCAACCGCACCGACGCTACCGCGATGGCCTCTATTCGCG GCGCAGGGACCGACCTTTCTCCAAGGACAGAGGAAATCAGGAGCTTCCCC GCGGGTTTCGCCGCGTCGGACGTGAGTGGCATGATCACGGGCATGACGAC GGCCAGGCTGGTTGGGGTAAACGCATCAAACCCAATTGATATGTTTGGAA GAGCCATGAACGCAGCAGCAGGAGCAACAGCAGCAGCGCCTGGCGGGAAA ACGTCGATGGGGATGGTGGGCCTGGCCAACGGCGGGGCAGGCGGAGTGAG GATAGGCGGAGCGTTGCCACCAAAAGGCATCGCCACAGAAGCAGCGTTAC GAGAAGGAGGTGGCGGCGGCAGCGGAGGAGGAGGAGGAGGAGGAAGCCAT GTAAGTCGTGGGGTAAAAGCAGAGGCCGGTCAGAGAGGAATGAGACACAC GGGTGGTATCGGCTGGGGAGCAAAACCGGCGAACGGAAGAATCGACGACA TTCTCGGCGATGGCGGCGGTGGGGCAAGCAAGCGTAGAAAAATAACCACA GCTGCGCCGGCTAGCGCCGCCCCAACCTTGCTGCCACTGCCGCCGCCGAA GAGCGGCGGTAGAGGCAAAGACACCCCTGCGGCTCCCGCTAGCTCTACCA ACGGCCTTCCGTCTTCCTTCAGCCAGCAACAAGATATGGTGCGAATGTGT CAACACCCCGGCTGCCGTCGAGCCCCCTGCTACGCCTGGGAAGGCAACAA GAAAGCATCGTTCTGCGCGAGCCACCGTCTGCCCGGACAAGTGAACGTCG TCAGCAAGCGGTGCAACCACGAAGGGTGCAGGCTAGGCCCGAGCTACGCC GAGCCCGGCGAAAAGAAGCCGAGGTACTGCGCCGGGCACCGCCTTCCGGG GCACGTGAACGTCGTCTCGCCCAGGTGCCAACACGAGGGCTGCTCCCGAG GGCCGTCGTATGGACAAGGTGGGGACGCGCGGAAACCTATCTTCTGCGCC GGGCACAGGCAGTACGGGATGGTCAACGTCGTGAGCCCTCAGTGCCAGGA CCCGAGCTGCTCGAAGGGGCCCTCGTACGGCTTCGAGGGCGAGAGGGCGT CGTTCTGCGCCAAGCACAAGCAGGACGGCCAGGTGAATGTCGTGAGCAGG AGGTGCAAGATGGAGCACTGCAGGAAGGGGCCGTCGTACGGGGAGGAAGG CGACCGCCGGGCTTCGTACTGCGCGAAGCATAAGCAAGACGGGAAAGCAG CACGTGTCTCACGGAACATACGGAGGGAACGGCAGTGTTTCGCGTGGGAG AGATCACCAAAGCAGCACTCCAAACCCATTTGTGGATGCTGAGGTAGGCG CCGGCTTTGTAGGAGACAGCGGCAGGCGGCTGGCGGGCGGAGGCGCGGTG AGCGGAGTAGGGGGCGGAAGCCATAACGTGCGCCGGCACTCTAGCAACCG CACCGACGCTACCGCGATGGCCTCTATTCGCGGCGCAGGGACCGACCTTT CTCCAAGGACAGAGGAAATCAGGAGCTTCCCCGCGGGTTTCGCCGCGTCG GACGTGAGTGGCATGATCACGGGCATGACGACGGCCAGGCTGGTTGGGGT AAACGCATCAAACCCAATTGATATGTTTGGAAGAGCCATGAACGCAGCAG CAGGAGCAACAGCAGCAGCGCCTGGCGGGAAAACGTCGATGGGGATGGTG GGCCTGGCCAACGGCGGGGCAGGCGGAGTGAGGATAGGCGGAGCGTTGCC ACCAAAAGGCATCGCCACAGAAGCAGCGTTACGAGAAGGAGGTGGCGGCG GCAGCGGAGGAGGAGGAGGAGGAGGAAGCCATGTAAGTCGTGGGGTAAAA GCAGAGGCCGGTCAGAGAGGAATGAGACACACGGGTGGTATCGGCTGGGG AGCAAAACCGGCGAACGGAAGAATCGACGACATTCTCGGCGATGGCGGCG GTGGGGCAAGCAAGCGTAGAAAAATAACCACAGCTGCGCCGGCTAGCGCC GCCCCAACCTTGCTGCCACTGCCGCCGCCGAAGAGCGGCGGTAGAGGCAA AGACACCCCTGCGGCTCCCGCTAGCTCTACCAACGGCCTTCCGTCTTCCT TCAGCCAGCAACAAGATATGGTGCGAATGTGTCAACACCCCGGCTGCCGT CGAGCCCCCTGCTACGCCTGGGAAGGCAACAAGAAAGCATCGTTCTGCGC GAGCCACCGTCTGCCCGGACAAGTGAACGTCGTCAGCAAGCGGTGCAACC ACGAAGGGTGCAGGCTAGGCCCGAGCTACGCCGAGCCCGGCGAAAAGAAG CCGAGGTACTGCGCCGGGCACCGCCTTCCGGGGCACGTGAACGTCGTCTC GCCCAGGTGCCAACACGAGGGCTGCTCCCGAGGGCCGTCGTATGGACAAG GTGGGGACGCGCGGAAACCTATCTTCTGCGCCGGGCACAGGCAGTACGGG ATGGTCAACGTCGTGAGCCCTCAGTGCCAGGACCCGAGCTGCTCGAAGGG GCCCTCGTACGGCTTCGAGGGCGAGAGGGCGTCGTTCTGCGCCAAGCACA AGCAGGACGGCCAGGTGAATGTCGTGAGCAGGAGGTGCAAGATGGAGCAC TGCAGGAAGGGGCCGTCGTACGGGGAGGAAGGCGACCGCCGGGCTTCGTA CTGCGCGAAGCATAAGCAAGACGGGATGGTCAACATCGTGAGCCGCACCC GCAAGTGCTGCACCCCCGGGTGCAACAAATACCCCAACTTCGGGAGGGAA GGAGACCGGAAAGCTAGCTTCTGCGCCCTCCACAGGCGAGAGGGGGACAT CGACCTCGCCAACGCACGGTTCTTGACGCGGGCGACGTAGGATGGTCAAC ATCGTGAGCCGCACCCGCAAGTGCTGCACCCCCGGGTGCAACAAATACCC CAACTTCGGGAGGGAAGGAGACCGGAAAGCTAGCTTCTGCGCCCTCCACA GGCGAGAGGGGGACATCGACCTCGCCAACGCACGGTTCTTGACGCGGGCG ACGTAG back to top
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