mRNA_L-elsbetiae_contig1509.3646.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1509.3646.1
Unique NamemRNA_L-elsbetiae_contig1509.3646.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1509.3646.1 vs. uniprot
Match: D7G4Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q7_ECTSI)

HSP 1 Score: 548 bits (1412), Expect = 8.470e-179
Identity = 256/306 (83.66%), Postives = 281/306 (91.83%), Query Frame = 3
Query:    3 SPPPKQLGESEAGSSKMVSTRQGPKSAVGRNHFETVFAEAMEGGNMEGHLMKQKRFTARWQTYYFKLEDGFLTHYEKKSLVGTRKNKTLELTSRSTTAFTNTKCCFCVRTGQSAWFVIAQTHEDMTRWMTAINAQIYSLFLKNFTPPADDYWGRGTEGRFFYGMPETGASQWIYTHPEDGAPRTGEGIFPMEVVEVVQLLPMGEDMLWLRLADARGWTCGRNTKDGEPCLEQVAGEIVEDNSVYELPRNLEQMTHILCGPAMASEVTGEILAPGDRVQAVERFTPAGTKSGIVFIKMADGRGWCPI 920
            SPPPKQ  E++A SSKMVSTR GPKSA GRNHFETVF EAMEGG MEGHLMKQKRFTARWQTYYFKL+DGFLTHY+KKSLVGTRK KTLEL   STTAFTNTKCCFCVRTGQ+AWF+IAQ H+ MT+WMTAINAQ+YSLFLKNFTPPAD+YWG+GT+GRFFYGMPE GASQWIYTHPE+GAPRTGEG+FPMEVVEVVQLLP+GED LWLRLAD RGWTCGR++KDGEPCLEQVAG+IVED  VYELPRN EQ TH+LCGPA ASEVTGE+L PGDRVQAVE+FTPAG  SG+VFIK+A+GRGW P+
Sbjct: 1159 SPPPKQSSENDATSSKMVSTRLGPKSAAGRNHFETVFQEAMEGGMMEGHLMKQKRFTARWQTYYFKLDDGFLTHYDKKSLVGTRKRKTLELKPHSTTAFTNTKCCFCVRTGQNAWFLIAQDHDQMTQWMTAINAQVYSLFLKNFTPPADNYWGQGTKGRFFYGMPENGASQWIYTHPEEGAPRTGEGVFPMEVVEVVQLLPVGEDHLWLRLADERGWTCGRHSKDGEPCLEQVAGDIVEDTRVYELPRNQEQGTHVLCGPATASEVTGEVLDPGDRVQAVEKFTPAGADSGVVFIKLAEGRGWVPL 1464          
BLAST of mRNA_L-elsbetiae_contig1509.3646.1 vs. uniprot
Match: D7FPQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ0_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 9.350e-92
Identity = 146/283 (51.59%), Postives = 199/283 (70.32%), Query Frame = 3
Query:   87 GRNHFETVFAEAMEGGNMEGHLMKQKRFTARWQTYYFKLEDGFLTHYEKKSLVGTRKNKTLELTSRSTTAFTNTKCCFCVRTGQSAWFVIAQTHEDMTRWMTAINAQIYSLFLKNFTPPADDYWGRGTEGRFFYGMPETGASQWIYTHPEDGAPRTGEGIFPMEVVEVVQLLPMGEDMLWLRLADARGWTCGRNTKDGEPCLEQVAGEIVEDNSVYELPRNLEQMTHILCGPAMASEVTGEILAPGDRVQAVERFTPAGTKSGIVFIKMADGRGWCPIRTGGG 935
            G   F+ +F EAM+GG +EGHLMKQ ++ +RW+  YF+LEDG+LT+Y+KKSLVGT KNK +ELT+ S T++TNTK CFCVRTG++ WF++ +    + +WMTAINAQI+ LF+K +  P D+YW +GT GRFFY M +    QWI T+PE  APRTG+G+FP EV+EV Q L   ++  +LR+ + RGWT  +N  DG    E++ GE+V D   Y  P + +    +L GP + S+ TGE L PG+R +A+ERFTP G  SG+VFIK+ DGRGW P+R   G
Sbjct: 1134 GARAFKEMFEEAMKGGCVEGHLMKQSKYFSRWKPRYFRLEDGYLTYYDKKSLVGTNKNKGMELTAHSITSYTNTKNCFCVRTGEAVWFLLGKDELALNKWMTAINAQIHGLFIKLYNVPEDNYWSQGTNGRFFYRMVDDALPQWIRTYPEQAAPRTGDGLFPGEVIEVAQTLT-NKETEFLRIGNDRGWTYAKNPADGSTLFEEIDGEVVPDTRNYGFPPSAKDPIPLLFGPGLESQQTGEALIPGERAEAMERFTP-GDGSGVVFIKLKDGRGWVPVRKRNG 1414          
BLAST of mRNA_L-elsbetiae_contig1509.3646.1 vs. uniprot
Match: D8LMS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS5_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 5.200e-71
Identity = 134/280 (47.86%), Postives = 179/280 (63.93%), Query Frame = 3
Query:   99 FETVFAEAMEGGNMEGHLMKQKRFTARWQTYYFKLEDGFLTHYEKKSLVGTRKNKTLELTSRSTTAFTNTKCCFCVRTGQSAWFVIAQTHEDMTRWMTAINAQIYSLFLKNFTPPADDYWGRGTEGRFFYGMPETGASQWIYTHPEDGAPRTGEGIFPMEVVEVVQLLPMGEDMLWLRLADARGWTCGRNTKDGEPCLEQVAGEIVEDNSVYELPRNLEQMTHILCGPAMASEVTGEILAPGDRVQAVERFTPAGTKSGIVFIKMADGRGWCPIRTGGGV 938
            FE+ F EAMEGG  EGHLMKQ   T  W++ YF+LED  LT Y+ KSLVGTRKNK +EL   ST ++TN   CF VRTG+  W ++A+  + M +W+TAINA I+ LF+K    P D+Y  +G +G+FFY M      QWI + PE+ APRTGEG+FP EVVE+VQ+L    + ++LR+A+ RGWT   N +DG    E+  G+  ED   Y   +N      IL GP+M S++TG+ LAPG   +A  RF PA  + G+ FIK+A  +GW P+    GV
Sbjct: 1184 FESRFKEAMEGGVTEGHLMKQVLSTM-WKSRYFRLEDDILTFYDTKSLVGTRKNKRMELQPDSTASYTNVPNCFSVRTGEENWILLAKDEDSMEKWITAINAVIHGLFIKRHNVPEDNYDSQGLKGQFFYRMVPNVQPQWIRSFPEEEAPRTGEGLFPGEVVEIVQVLS-NNNKVYLRIANDRGWTVAANPEDGSVLFEESNGDFTEDPMDYCTSKN---EVPILFGPSMESQMTGDALAPGQIAEATGRFVPAD-EGGLAFIKLAGDKGWVPMNPSFGV 1457          
BLAST of mRNA_L-elsbetiae_contig1509.3646.1 vs. uniprot
Match: D7FJU8_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU8_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 4.500e-61
Identity = 122/280 (43.57%), Postives = 165/280 (58.93%), Query Frame = 3
Query:  108 VFAEAMEGGNMEGHLMKQKRFTARWQTYYFKLEDGFLTHY--EKKSLVGTRKNKT--LELTSRSTTAFTNTKCCFCVRTGQSAWFVIAQTHEDMTRWMTAINAQIYSLFLKNFTPPADDYWGRGTEGRFFYGMPETGASQWIYTHPEDGAPRTGEGIFPMEVVEVVQLLPMGEDMLWLRLADARGWTCGRNTKDGEPCLEQVAGEIVEDNSVYELPRNLEQMTHILCGPAMASEVTGEILAPGDRVQAVERFTPAGTKSGIVFIKMADGRGWCPIRTGGG 935
            V  + M     E    K  R    W  YYF+L++  LT     + S  G    +   ++LTS + T++TNTK CFCVRT   +WF++A++ +DM RWMTAIN +   +F +      DDY G+G  GRFFY M E    QWI THP   APRTG+G+FP EVVEV Q+L   ED+ +LRLA+ RGWT  R+  DG    E +AG + ED   Y  P     M  IL GP + ++ TG ++ PG+RV+A ERFTP    S +VF+K+ DGRGW P+++  G
Sbjct: 1058 VELKVMNLNTSEDKREKPTRRAPTWNQYYFRLKEETLTKSPPRRSSFPGNANQQAEDMKLTSATITSYTNTKNCFCVRTDDVSWFLLARSLDDMKRWMTAINLRARHIFQREHGVH-DDYMGQGRRGRFFYRMVEGSVPQWILTHPMTKAPRTGDGLFPGEVVEVTQVLS-SEDVTFLRLANDRGWTFARSPADGSVLFEDLAGGVAEDTEEYTFPPGASGMVPILHGPGLRTQATGVMVRPGERVRASERFTPLDNSS-VVFVKLQDGRGWMPLKSQHG 1334          
BLAST of mRNA_L-elsbetiae_contig1509.3646.1 vs. uniprot
Match: A0A6H5LIB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIB2_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 1.150e-59
Identity = 120/280 (42.86%), Postives = 168/280 (60.00%), Query Frame = 3
Query:  108 VFAEAMEGGNMEGHLMKQKRFTARWQTYYFKLEDGFLTHY--EKKSLVGT--RKNKTLELTSRSTTAFTNTKCCFCVRTGQSAWFVIAQTHEDMTRWMTAINAQIYSLFLKNFTPPADDYWGRGTEGRFFYGMPETGASQWIYTHPEDGAPRTGEGIFPMEVVEVVQLLPMGEDMLWLRLADARGWTCGRNTKDGEPCLEQVAGEIVEDNSVYELPRNLEQMTHILCGPAMASEVTGEILAPGDRVQAVERFTPAGTKSGIVFIKMADGRGWCPIRTGGG 935
            V  + M     E    K  R   +W  Y+F+L +  LT     + S  G   ++++ ++LTS + T++TNTK CFCVRT + +WF++A++ +DM RWM+AIN +   +F +      DDY G+G  GRFFY M E    QWI THP   APRTG+G+FP EVVEV Q+L   ED+ +LRLA+ RGWT  R+  DG    E +AG + ED   Y  P     M  IL GP + ++ TG  + PG+RV+A ERFTP    S +VF+K+ DGRGW P+++  G
Sbjct: 2313 VELKVMNLNTSEDKREKPTRRAPKWNQYFFRLREETLTKSLPRRPSSPGNADQQSEDMKLTSATITSYTNTKNCFCVRTDEVSWFLLARSLDDMKRWMSAINLRARHIFQREHGVH-DDYAGQGRRGRFFYRMVEGSVPQWILTHPMTKAPRTGDGLFPGEVVEVTQVLS-SEDVTFLRLANDRGWTFARSPADGSVLFEDLAGGVAEDTEEYTFPPGASGMVPILHGPGLKTQATGVFVRPGERVRASERFTPLDN-SKVVFVKLQDGRGWMPLKSEHG 2589          
BLAST of mRNA_L-elsbetiae_contig1509.3646.1 vs. uniprot
Match: D8LMW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW4_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 4.500e-59
Identity = 117/281 (41.64%), Postives = 168/281 (59.79%), Query Frame = 3
Query:  111 FAEAMEGGNMEGHLMKQKRFTARWQTYYFKLEDGFLTHYEKKSLVGTRKNKTLELTSRSTTAFTNTKCCFCVRTGQSAWFVIAQTHEDMTRWMTAINAQIYSLFLKNFTPPADDYWGRGTEGRFFYGMPETGASQWIYTHPEDGAPRTGEGIFPMEVVEVVQLLPMGEDMLWLRLADARGWTCGRNTK--DGEPCLEQVAGEIVEDNSVYELPRNLEQMTHILCGPAMASEVTGEILAPGDRVQAVERFTPAG---TKSGIVFIKMADGRGWCPIRTGGGV 938
            F EAME G  EG+LM Q +   RW   YF L++GFL+HYEK SLVGT+K+KT+EL + S T  TN    F VRTG + W ++A++ ++M  WM AI  QI++LF++ +  P DDY  +GT G+ FY M      QWI T P   AP TG+G+F  E++EV Q+L   E + +LR+A+ RGW   ++ +  DG     +V+GE+  +   + +P    Q   +L GP++ S+ TG  L PGD V+ V+R+T A     + G  F+K+    GW PI    GV
Sbjct: 1119 FEEAMEDGYKEGYLMSQSKMMKRWTPRYFVLDNGFLSHYEKISLVGTKKHKTMELKADSVTRPTNQINTFGVRTGTTEWLLLARSKKEMKAWMGAITDQIHALFIREYNVPGDDYQSQGTWGQCFYKMAAGVRPQWIRTFPVPQAPHTGDGLFEGEIIEVTQVLE-NEGVKFLRMANDRGWASAQDIEAGDGTALFTKVSGELTTETREHNVPMIANQPAVVLFGPSLESQETGATLMPGDSVRVVQRYTSAPGVEKRDGQAFVKLKKTGGWVPIMKSNGV 1398          
BLAST of mRNA_L-elsbetiae_contig1509.3646.1 vs. uniprot
Match: D8LHQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ0_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 4.950e-56
Identity = 102/194 (52.58%), Postives = 136/194 (70.10%), Query Frame = 3
Query:   99 FETVFAEAMEGGNMEGHLMKQKRFTARWQTYYFKLEDGFLTHYEKKSLVGTRKNKTLELTSRSTTAFTNTKCCFCVRTGQSAWFVIAQTHEDMTRWMTAINAQIYSLFLKNFTPPADDYWGRGTEGRFFYGMPETGASQWIYTHPEDGAPRTGEGIFPMEVVEVVQLLPMGED-MLWLRLADARGWTCGRNTKD 677
            FET F EA   G MEG+LMKQ + ++RW++ +F+L+DGFLT Y+KKSLVGT  NK +ELT  ST +F  TK CFCVRT  +AWF++A+    M  WMTAINA+I+ LF+K +  P D+YW +G +GRFFY M      QWI T+PE  APRTG+G+F  +V++VVQ+L   E   ++LR+AD RGW   R+  D
Sbjct: 1146 FETKFKEAAIAGRMEGYLMKQSKHSSRWKSQFFRLDDGFLTCYDKKSLVGTTPNKEMELTGHSTASFATTKNCFCVRTEDAAWFLMARDLGSMNEWMTAINAEIHRLFVKLYDVPEDNYWSQGLQGRFFYRMAAGARPQWILTYPEQAAPRTGDGLFEGDVIDVVQVLTHKETGKVFLRIADDRGWAQRRDPVD 1339          
BLAST of mRNA_L-elsbetiae_contig1509.3646.1 vs. uniprot
Match: A0A6H5JKN0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN0_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.600e-55
Identity = 112/279 (40.14%), Postives = 161/279 (57.71%), Query Frame = 3
Query:  117 EAMEGGNMEGHLMKQKRFTARWQTYYFKLEDGFLTHYEKKSLVGTRKNKTLELTSRSTTAFTNTKCCFCVRTGQSAWFVIAQTHEDMTRWMTAINAQIYSLFLKNFTPPADDYWGRGTEGRFFYGMPETGASQWIYTHPEDGAPRTGEGIFPMEVVEVVQLLPMGEDMLWLRLADARGWTCGRNTK--DGEPCLEQVAGEIVEDNSVYELPRNLEQMTHILCGPAMASEVTGEILAPGDRVQAVERFTPAG---TKSGIVFIKMADGRGWCPIRTGGGV 938
            EAM  G  EG+LM Q +   RW   YF L++GFL+HYE  SLVGT+K+KT+EL + S T   N    F VRTG + W ++A++  +M  WM AI  QI++LF++ +  P DDY  +G  G+ FY M      QWI T P   AP TG+G+F  E +EV Q+L   E + +LR+A+ RGW   ++ +  DG     +V+GE+  +   + +P    Q   +L GP++ S+  G  L PGD V+ V+R+TPA     + G  F+K+    GW PI    GV
Sbjct:  497 EAMADGYKEGYLMSQSKMMKRWTPRYFVLDNGFLSHYENISLVGTKKHKTMELKADSVTRPANQINTFGVRTGTTEWLLLARSKNEMKAWMGAIKDQIHALFIREYNVPGDDYQSQGAWGQCFYKMVAGVRPQWIRTFPVPQAPHTGDGLFEGETIEVTQVLE-NEGVSFLRMANDRGWASAQDIEAGDGTALFTKVSGELTTETREHIVPMIANQPAVVLFGPSLESQEMGATLMPGDIVRVVQRYTPAPGVEKRDGQTFVKLKKTGGWVPIMKSNGV 774          
BLAST of mRNA_L-elsbetiae_contig1509.3646.1 vs. uniprot
Match: A0A836C8E2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E2_9STRA)

HSP 1 Score: 206 bits (523), Expect = 3.690e-54
Identity = 123/354 (34.75%), Postives = 177/354 (50.00%), Query Frame = 3
Query:   12 PKQLGESEAGSSKMVSTRQGPKSAVGRNHFETVFAEAMEGGNMEGHLMKQKRFTARWQTYYFKLEDGFLTHYEKKSLVGTRKNKTLELTSRSTTAFTNTKCCFCVRTGQSAWFVIAQTHEDMTRWMTAINAQIYSLFLK-------------------NFTPPADDYWGR--GTEGRFFYGMPETGASQWIYTHPEDGAPRTGEGIFPMEVVEVVQLLPMGEDMLWLRLADARGWTCGRNTKD-----------------------------GEPCLEQVAGEIVEDNSVYELPRNLEQMTHILCGPAMASEVTGEILAPGDRVQAVERFTPAGTKSGIVFIKMADGRGWCPIR 923
            P+ +  +E   +  V+ RQ       R  ++T F  A+    +EG L K+ +   RW+  +F LE+  L +Y+KK+L+G+ K KTL +TS S T+ TN K CFCV+TG   WF++A+   +  +WMTA+NA IY+L+++                   ++ PP D+YW     T    F+   E    QW+   PE  APRTG+G+ P EVVEV Q +      ++LRLAD RGW   R+  D                                  EQ+ G+   DN +Y       Q   I  GP + S+ TG+ L PG +VQA  RF P    SG++FIK+ADGRGW P+R
Sbjct: 1346 PRPIDYTEVRRASQVAARQ-------RESYKTKFVAALRADKVEGSLKKKTKVLDRWKARWFVLENTALEYYDKKALLGSDKKKTLPITSTSVTSATNLKDCFCVKTGDELWFLLAKDDAEKDKWMTAVNALIYALYVQRIAXXXXXXXXXXXXXXXXSYRPPQDNYWEAEGATNMHGFFRAIEASTPQWVRAFPELDAPRTGDGVVPGEVVEVEQAIEKRSGAVFLRLADERGWVLLRSPHDMFXXXXXXXXXXXXXXXXGGCVXXXXXXRSTALFEQLRGDATVDNKLYGFLDPKMQPVPIYAGPGLKSKPTGDSLTPGCKVQAAMRFLPYDL-SGMMFIKLADGRGWVPVR 1691          
BLAST of mRNA_L-elsbetiae_contig1509.3646.1 vs. uniprot
Match: A0A6H5KNS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNS5_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 9.870e-37
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 3
Query:    3 SPPPKQLGESEAGSSKMVSTRQGPKSAVGRNHFETVFAEAMEGGNMEGHLMKQKRFTARWQTYYFKLEDGFLTHYEKKSLVGTRKNK 263
            SPPPKQ  E++A SSKMVSTR GPKSA GRNHFETVF EAMEGG MEGHLMKQKRFTARWQTYYFKLEDGFLTHY+KKSLVGTRK K
Sbjct:  820 SPPPKQSSENDATSSKMVSTRLGPKSATGRNHFETVFQEAMEGGMMEGHLMKQKRFTARWQTYYFKLEDGFLTHYDKKSLVGTRKRK 906          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1509.3646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G4Q7_ECTSI8.470e-17983.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPQ0_ECTSI9.350e-9251.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMS5_ECTSI5.200e-7147.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJU8_ECTSI4.500e-6143.57PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5LIB2_9PHAE1.150e-5942.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMW4_ECTSI4.500e-5941.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHQ0_ECTSI4.950e-5652.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKN0_9PHAE1.600e-5540.14PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836C8E2_9STRA3.690e-5434.75P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5KNS5_9PHAE9.870e-3787.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1509contigL-elsbetiae_contig1509:1098..5792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score528.9
Seed ortholog evalue1.6e-147
Seed eggNOG ortholog2880.D7G4Q7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1385
Cds size891
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1509.3646.1prot_L-elsbetiae_contig1509.3646.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1509 1148..5348 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.6962805-UTR-L-elsbetiae_contig1509:1097..11471622815612.6962805-UTR-L-elsbetiae_contig1509:1097..1147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1509 1098..1147 +
1691682991.1158936-UTR-L-elsbetiae_contig1509:1097..11471691682991.1158936-UTR-L-elsbetiae_contig1509:1097..1147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1509 1098..1147 +
1622815612.81026-UTR-L-elsbetiae_contig1509:5348..57921622815612.81026-UTR-L-elsbetiae_contig1509:5348..5792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1509 5349..5792 +
1691682991.2025602-UTR-L-elsbetiae_contig1509:5348..57921691682991.2025602-UTR-L-elsbetiae_contig1509:5348..5792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1509 5349..5792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.7088006-CDS-L-elsbetiae_contig1509:1147..12401622815612.7088006-CDS-L-elsbetiae_contig1509:1147..1240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 1148..1240 +
1691682991.1294634-CDS-L-elsbetiae_contig1509:1147..12401691682991.1294634-CDS-L-elsbetiae_contig1509:1147..1240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 1148..1240 +
1622815612.7220752-CDS-L-elsbetiae_contig1509:1653..17731622815612.7220752-CDS-L-elsbetiae_contig1509:1653..1773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 1654..1773 +
1691682991.1392925-CDS-L-elsbetiae_contig1509:1653..17731691682991.1392925-CDS-L-elsbetiae_contig1509:1653..1773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 1654..1773 +
1622815612.7331765-CDS-L-elsbetiae_contig1509:2218..22931622815612.7331765-CDS-L-elsbetiae_contig1509:2218..2293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 2219..2293 +
1691682991.1490958-CDS-L-elsbetiae_contig1509:2218..22931691682991.1490958-CDS-L-elsbetiae_contig1509:2218..2293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 2219..2293 +
1622815612.7440808-CDS-L-elsbetiae_contig1509:3016..31441622815612.7440808-CDS-L-elsbetiae_contig1509:3016..3144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 3017..3144 +
1691682991.1592865-CDS-L-elsbetiae_contig1509:3016..31441691682991.1592865-CDS-L-elsbetiae_contig1509:3016..3144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 3017..3144 +
1622815612.756262-CDS-L-elsbetiae_contig1509:3709..38391622815612.756262-CDS-L-elsbetiae_contig1509:3709..3839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 3710..3839 +
1691682991.170834-CDS-L-elsbetiae_contig1509:3709..38391691682991.170834-CDS-L-elsbetiae_contig1509:3709..3839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 3710..3839 +
1622815612.7721004-CDS-L-elsbetiae_contig1509:4216..43441622815612.7721004-CDS-L-elsbetiae_contig1509:4216..4344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 4217..4344 +
1691682991.178656-CDS-L-elsbetiae_contig1509:4216..43441691682991.178656-CDS-L-elsbetiae_contig1509:4216..4344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 4217..4344 +
1622815612.7843595-CDS-L-elsbetiae_contig1509:4763..48421622815612.7843595-CDS-L-elsbetiae_contig1509:4763..4842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 4764..4842 +
1691682991.1866176-CDS-L-elsbetiae_contig1509:4763..48421691682991.1866176-CDS-L-elsbetiae_contig1509:4763..4842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 4764..4842 +
1622815612.7967947-CDS-L-elsbetiae_contig1509:5210..53481622815612.7967947-CDS-L-elsbetiae_contig1509:5210..5348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 5211..5348 +
1691682991.1945877-CDS-L-elsbetiae_contig1509:5210..53481691682991.1945877-CDS-L-elsbetiae_contig1509:5210..5348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 5211..5348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1509.3646.1

>prot_L-elsbetiae_contig1509.3646.1 ID=prot_L-elsbetiae_contig1509.3646.1|Name=mRNA_L-elsbetiae_contig1509.3646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=297bp
MVSTRQGPKSAVGRNHFETVFAEAMEGGNMEGHLMKQKRFTARWQTYYFK
LEDGFLTHYEKKSLVGTRKNKTLELTSRSTTAFTNTKCCFCVRTGQSAWF
VIAQTHEDMTRWMTAINAQIYSLFLKNFTPPADDYWGRGTEGRFFYGMPE
TGASQWIYTHPEDGAPRTGEGIFPMEVVEVVQLLPMGEDMLWLRLADARG
WTCGRNTKDGEPCLEQVAGEIVEDNSVYELPRNLEQMTHILCGPAMASEV
TGEILAPGDRVQAVERFTPAGTKSGIVFIKMADGRGWCPIRTGGGV*
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mRNA from alignment at L-elsbetiae_contig1509:1098..5792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1509.3646.1 ID=mRNA_L-elsbetiae_contig1509.3646.1|Name=mRNA_L-elsbetiae_contig1509.3646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4695bp|location=Sequence derived from alignment at L-elsbetiae_contig1509:1098..5792+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGCCCGCCGCCCAAGCAGCTGGGCGAGAGCGAGGCGGGCTCTTCCAAG ATGGTGTCCACGAGGCAAGGCCCCAAATCCGCCGTCGGCCGGAACCACTT CGAGACCGTGTTCGCAGAAGCGATGGAAGGCGGCAACATGGAGGTAAGTG AGCCCACAGCAGCAGCAGCAGCAGTAGCAGCTTGGGCTTCCTGCTCGCGG GAGCGGGAGCTATGAATGATATGCATGTAGAACGGCACCGACTTTCCTTG CCGAGTGTCGTCTGGCAGCAAGCCATGCGAAGGTCTTTTTCTCTCTCGCG TTCTGCGTATGTATGTACCGGGCGCGGTTACCCGCTTGCACACACGAGTA CGCTCTGCCGGCGGCGCCCGGGCACCTACATGTAATGTTTTTTTTTTTTT TTTCCACCCCTTCTTATGCTCGTGCTGAGCCGGCCGTGAGGTATGTATTT GTGGATGTATGTATGTATGTGTGTTCGTCGGCGTGGTTTGTTGGTCTTGA CACGCTTCTCCTTTTGGCTTCGCGCGAACCTTTCCTCCTGTGTCGTATCG TAACAGGGCCACCTAATGAAGCAGAAGAGGTTCACGGCACGGTGGCAGAC GTACTACTTCAAGCTCGAGGACGGCTTCCTGACCCACTACGAGAAAAAGT CCCTCGTGGGAACACGCAAGAACAAGGTGAGTGGGGCAAGCAAGAAGCAT CGGTGCAGAGATGCGTCCATTGAAAAGATACGTCCATCCATCCCGACACA TGTACGTAGAGTATGTATGACTACGGTTCAGTACTCTGGCAAGATGTCCT CGTGACAGGGAAGGGAGCCCATCAAGTACTGGAAATAATTGTGAAAAAAA AAAAACTACATATGCATAGAGTATGTATTTAGGAAAAAGAAGACACAGTG GATGCTATGTACAGCACAGTGTATAGATACACGAAGTGGACAGGGGTCGA GAAGGGCGTGGCACGACAAGAGATGGACGCTCCAGGCTCGTGTTGTTTCC GCGTGGCGGCTCGCTCGCCCGGTATGCCACCCCCCCCCCCCCCCTGTCTT CCCCGACACAACCGGAGTTGCATCACCTGACGTGCGGTGTTGGTGTCTTT TTTCTGCTCTTGTTTCCACAGACGCTGGAGCTCACCAGTCGCTCCACGAC GGCCTTTACCAACACCAAGTGCTGCTTCTGCGTTCGCACGGGCCAGGTGA AAAGAGAGTTTGCGTGACCCATGGTTGGGTTGGTGACTCAGAGGAGTTGG TCAAATCCCCGAGTACCGTGGCATATTTTTGGGGGTGGCCGTGGGATATT CCGGGCTGGTTGCAAACACGAAGCCCCCGTCGGCGGTGTTTTTGTCGGGG TCTCGATGGCGCTCTCTTGATGCTGATGGCATCGGATTACCCTCGCGATA TTTAACTGTTTTTAGCAGCAATATTTAGCGTTTTCCGACAGAACTAACCA ACGAGCCTTCCTACCGCCCACCACTCAAAGTCTTGAGGGTTGTCGCGAAT GTAACGACCAGCAGCGTTGGCTCCGAAAGCAAACCACACCATTTATGTAC GAAGCTTGAGAGTTGTCCGAAGGTAACGATCAGCAGCGTTGGCTCCGAAA GCAAATCACGCCACCTACGAAACTAACTCGGTGGCAGTAACCTGCCAAAC CGAGCTTGACTGGCCAGTCGCCGTGAACATTGTTAGCGCTACAATACTGT TCCAGGTCTGTGAGCTTGATTTCGGTTGGATTAGGTCGCCGAGTCTCGCC CCCAAGTTCCCAACAATCCTCTCTCTCTCGTTCTCTTCTTTTCTTCTCTC TCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCATGCCGCTACCAC CCCGTCTTGTTTGTTGTTTGTTCGGTCCGCGCGCTTGGCTGAACAACGAT ATCTGTGTCGAACGAACAGTCGGCCTGGTTCGTGATCGCTCAGACCCACG AGGACATGACCAGGTGGATGACGGCCATCAACGCACAAATCTACAGCCTT TTCCTGAAGAACTTCACCCCGCCGGCGGACGACTACTGGGGGCGGGGGTG AGTCGCGACATCGAAGCAGAAGTAGTTGCGTTGCGTGTGCCGTTAGGGCA GACAAATATAGATTATTTATCACCTTCGTCCCCTGCGCCCGCGAAGCCAT GCGGGGTTCTCGATGTCACACGGCTCATGTGTGTGTGGCTGTATTGTAGT AGTGGTGGTGGCGCAGTCGTTGCGGTGCGTGTTCGCGACGGTATGCTGGC AGGTTGTGTCATCTACATGACCACGCTCACTCTGTTGGTGGTCGTGGTCT TCTTTCTTTCGGCCTGGGCCACCTCGGCACACAGTGAGCGGCGTTTCTCG GAAGACGGTGCTGGATGAGGAAGAGCAGGAGGCGTTTTTATGTTTGTGCC GACGCAGCACTTATTATGCTGCTGCTTGCCTTGGTTTGTTTAAAAATAAA ACAAAGAACCAAAGATGGAACCTAACCCATACTAGAAAAAGACTCGATAT GGGGTTCAAACGGTATTTGTTTGTGCCGACGCAGCACTTATTACGCTGCT TGCCCTGGTTGTTTGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCGTGACAACAGGACGGAGGGGCGCTTTTTCTACGGGATGCCGGAGACTG GTGCGTCGCAGTGGATCTACACACACCCCGAAGACGGGGCCCCGCGCACT GGGGAGGGCATCTTCCCCATGGAGGTTGTCGAGGTCGTCCAGGTGGGTGG CCAGACACACACCGCCACGGCTTTTACTTGAGCTCGATGCCGTTTGTGTT GATCGCTTGGGCGCACACCCAAGCGCTTTGAGACTCCGCGGGCGATTTTT CGGCGTTCCGCCGAGCCTACGGCTGCTTTTTGGGGTGGTGCGAACAGGCA GTATGTAGTGGTGTCTGCTTCCGAGGGTAGATAGACCGACCCCCTGTGTG AAACTGTTTGCTTTCTAGACCCCTCCGCGTGAGTCAATCGCGTTCGTTTC GCGAGGGGTGGCCGGGTTAGGCACTCCGCAAGGAAAGGAACTTACACGAG CAAGAGAGACCACGGGATTTAAAGGACAGGCGATACACGACTGTTGTTGC TACTGCTGTTGCGTGGCAGCTGCTGCCAATGGGAGAGGACATGCTCTGGC TGAGGCTGGCGGACGCGCGAGGCTGGACGTGCGGCAGGAACACCAAGGAC GGAGAACCGTGCCTGGAGCAGGTGGCCGGCGAAATCGTCGAGGACAAGTG AGATAATTTCACCAATTTGTGGCATATTTTGTAGCCTCCTTTTTTATCGC GCTCTACGGGCGGGCGGGCGGGGGGGCACCTCTGGGCCCCTTGAAACGGC GCCACATGTATCAATGCATACGTGTCTCGTCGCAGAACGAATAAGTGGTC GTCCTGCGTACTGACCGGTCACCTCCACCGCCTGCCTTGCCTTGCCTTGC CTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGC CTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGC CTTACCTGGACGTGACGTGACGTGACGTGACGTGACGTGACGTGACGTGA CGTGACGTGACGTGTCACCCGCACGAAACTCCTTGCCGTGCGCTTTTGCT GGCTGCTCTGAAACAGCTCCGTGTACGAGCTGCCGAGGAACCTCGAGCAG ATGACGCACATTCTCTGCGGTCCTGCCATGGCTTCTGAAGTCACTGTGAG TGCGACGGTTCCTAGAAAGTCAACATTAAGTTGAACGACAAGCTTAAACA TCCACATGGCGGTTTCACGGCGGTTCTAGCGGGCTGTGTGTTCAGAGCGG TTCGTTAGCTGCGTGTTGGATCGAGCGCACTTTGTGGGATCTCAAGTGCC CGTGGGGCTGTAGTGTTTTCGTTTTCCCGTCACGTCGGCAGACTGGAACA AGGAACAACTGTTGCAATCAACACCAACTTTTTGCAGTGGACTCGGGTAT GTTTGTGTCTATCATAGGCCAGCCGCTGCATCTCTGTACACGCGTTTACA AAGGCGCCATCGTCCACTCTGCCCCTGCCTTTTCTGTCGCATCGCGCGGA CGTGCGTAAACAGGGCGAGATCCTGGCCCCGGGAGACCGTGTCCAGGCGG TCGAGAGGTTCACGCCCGCGGGAACGAAGTCCGGAATCGTGTTCATCAAG ATGGCCGACGGGCGCGGCTGGTGCCCGATCAGGACCGGCGGCGGCGTTTA GGCCAAACCGGAACAAGCTCCGGTGAAGTAATTACGCGCGGCTCAACTTC TGTTCGTGTTGCCCGTGTGTAGGGAAGCAGGCGGTGTGCGCCTGCCGAAC GGCACAGCAGTAGGGACCAAAGAAGTGGGCCAGCATATCGACAGCGGCGC GCGGCTGGTGGTTAACCTACCTACTACTCTCGCAGGATTTTGCTCTATGT TATACCGCTGCGAAGTTGTGGACAGTTTAAGGACTGATTGGACGGTGTTG TTTTGGGCGGTTTCGTTGATGTAGGGCGAAAATGAAGTAATCCCTCAGCG CTTAGCTCTCACGAACGTGGCGACTGCGTTTTGCGCACACGCAAAGCGGT GATTGGGGGCGAGGGCCGGGCTCTATTATTTGTGTTTTTTTACTCCAATA GAAAAGAAGTCGGACGAGTCGCAAGGCGATGGGTGTGTAGTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1509:1098..5792+

>mRNA_L-elsbetiae_contig1509.3646.1 ID=mRNA_L-elsbetiae_contig1509.3646.1|Name=mRNA_L-elsbetiae_contig1509.3646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1782bp|location=Sequence derived from alignment at L-elsbetiae_contig1509:1098..5792+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTCCACGAGGCAAGGCCCCAAATCCGCCGTCGGCCGGAACCACTT
CGAGACCGTGTTCGCAGAAGCGATGGAAGGCGGCAACATGGAGATGGTGT
CCACGAGGCAAGGCCCCAAATCCGCCGTCGGCCGGAACCACTTCGAGACC
GTGTTCGCAGAAGCGATGGAAGGCGGCAACATGGAGGGCCACCTAATGAA
GCAGAAGAGGTTCACGGCACGGTGGCAGACGTACTACTTCAAGCTCGAGG
ACGGCTTCCTGACCCACTACGAGAAAAAGTCCCTCGTGGGAACACGCAAG
AACAAGGGCCACCTAATGAAGCAGAAGAGGTTCACGGCACGGTGGCAGAC
GTACTACTTCAAGCTCGAGGACGGCTTCCTGACCCACTACGAGAAAAAGT
CCCTCGTGGGAACACGCAAGAACAAGACGCTGGAGCTCACCAGTCGCTCC
ACGACGGCCTTTACCAACACCAAGTGCTGCTTCTGCGTTCGCACGGGCCA
GACGCTGGAGCTCACCAGTCGCTCCACGACGGCCTTTACCAACACCAAGT
GCTGCTTCTGCGTTCGCACGGGCCAGTCGGCCTGGTTCGTGATCGCTCAG
ACCCACGAGGACATGACCAGGTGGATGACGGCCATCAACGCACAAATCTA
CAGCCTTTTCCTGAAGAACTTCACCCCGCCGGCGGACGACTACTGGGGGC
GGGGTCGGCCTGGTTCGTGATCGCTCAGACCCACGAGGACATGACCAGGT
GGATGACGGCCATCAACGCACAAATCTACAGCCTTTTCCTGAAGAACTTC
ACCCCGCCGGCGGACGACTACTGGGGGCGGGGGACGGAGGGGCGCTTTTT
CTACGGGATGCCGGAGACTGGTGCGTCGCAGTGGATCTACACACACCCCG
AAGACGGGGCCCCGCGCACTGGGGAGGGCATCTTCCCCATGGAGGTTGTC
GAGGTCGTCCAGGACGGAGGGGCGCTTTTTCTACGGGATGCCGGAGACTG
GTGCGTCGCAGTGGATCTACACACACCCCGAAGACGGGGCCCCGCGCACT
GGGGAGGGCATCTTCCCCATGGAGGTTGTCGAGGTCGTCCAGCTGCTGCC
AATGGGAGAGGACATGCTCTGGCTGAGGCTGGCGGACGCGCGAGGCTGGA
CGTGCGGCAGGAACACCAAGGACGGAGAACCGTGCCTGGAGCAGGTGGCC
GGCGAAATCGTCGAGGACAACTGCTGCCAATGGGAGAGGACATGCTCTGG
CTGAGGCTGGCGGACGCGCGAGGCTGGACGTGCGGCAGGAACACCAAGGA
CGGAGAACCGTGCCTGGAGCAGGTGGCCGGCGAAATCGTCGAGGACAACT
CCGTGTACGAGCTGCCGAGGAACCTCGAGCAGATGACGCACATTCTCTGC
GGTCCTGCCATGGCTTCTGAAGTCACTCTCCGTGTACGAGCTGCCGAGGA
ACCTCGAGCAGATGACGCACATTCTCTGCGGTCCTGCCATGGCTTCTGAA
GTCACTGGCGAGATCCTGGCCCCGGGAGACCGTGTCCAGGCGGTCGAGAG
GTTCACGCCCGCGGGAACGAAGTCCGGAATCGTGTTCATCAAGATGGCCG
ACGGGCGCGGCTGGTGCCCGATCAGGACCGGCGGCGGCGTTTAGGGCGAG
ATCCTGGCCCCGGGAGACCGTGTCCAGGCGGTCGAGAGGTTCACGCCCGC
GGGAACGAAGTCCGGAATCGTGTTCATCAAGATGGCCGACGGGCGCGGCT
GGTGCCCGATCAGGACCGGCGGCGGCGTTTAG
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