mRNA_L-elsbetiae_contig1509.3648.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1509.3648.1
Unique NamemRNA_L-elsbetiae_contig1509.3648.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1509.3648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1509contigL-elsbetiae_contig1509:14421..14941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1509.3648.1prot_L-elsbetiae_contig1509.3648.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1509 14422..14733 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.634221-UTR-L-elsbetiae_contig1509:14420..144211622815612.634221-UTR-L-elsbetiae_contig1509:14420..14421Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1509 14421..14421 +
1691682991.0910907-UTR-L-elsbetiae_contig1509:14420..144211691682991.0910907-UTR-L-elsbetiae_contig1509:14420..14421Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1509 14421..14421 +
1622815612.6545253-UTR-L-elsbetiae_contig1509:14733..149411622815612.6545253-UTR-L-elsbetiae_contig1509:14733..14941Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1509 14734..14941 +
1691682991.107512-UTR-L-elsbetiae_contig1509:14733..149411691682991.107512-UTR-L-elsbetiae_contig1509:14733..14941Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1509 14734..14941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.644357-CDS-L-elsbetiae_contig1509:14421..147331622815612.644357-CDS-L-elsbetiae_contig1509:14421..14733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 14422..14733 +
1691682991.1000671-CDS-L-elsbetiae_contig1509:14421..147331691682991.1000671-CDS-L-elsbetiae_contig1509:14421..14733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 14422..14733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1509.3648.1

>prot_L-elsbetiae_contig1509.3648.1 ID=prot_L-elsbetiae_contig1509.3648.1|Name=mRNA_L-elsbetiae_contig1509.3648.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MCVVSWWIDHLCYGPKSPKMVHVVCANWLSLLSLSSYTKLPAAHLRCREL
VPCKYDAKPFGLSCSLVSYLRMPSLSAWINSSSPSFQPLRVLPILRLYHL
AET*
back to top

mRNA from alignment at L-elsbetiae_contig1509:14421..14941+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1509.3648.1 ID=mRNA_L-elsbetiae_contig1509.3648.1|Name=mRNA_L-elsbetiae_contig1509.3648.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=521bp|location=Sequence derived from alignment at L-elsbetiae_contig1509:14421..14941+ (Laminarionema elsbetiae ELsaHSoW15)
GATGTGCGTAGTCTCCTGGTGGATTGATCACCTCTGTTATGGGCCAAAAT
CGCCCAAAATGGTGCACGTTGTGTGCGCGAACTGGCTCTCTCTCCTCTCT
CTTTCTTCCTATACAAAGCTCCCGGCAGCACACTTGAGATGCCGAGAGTT
AGTGCCCTGTAAATACGACGCCAAACCTTTTGGCCTATCATGCTCTTTGG
TGTCTTATCTACGCATGCCCTCACTTTCAGCCTGGATTAACTCCTCTTCG
CCGAGCTTTCAACCTCTCCGTGTCTTGCCAATACTGAGGCTCTATCATCT
AGCCGAAACATGAATGTGCCTCCTTGAAAATCACCGGCGCATGTGCCTCC
TTAAAAACGATGTCGCATATCACTGCGCAGCGAAAAATGACCATTTTCAC
GGATTCCAACAGAGAAAGCCCCCGCCAACATACATACCCGAGAAAAGAAT
ACCAGCGGCCCTCGCGAATTCCGATTTGGAATCTACCATAACATTTGGCC
TTGCACGCAGGGGCCGGTCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1509:14421..14941+

>mRNA_L-elsbetiae_contig1509.3648.1 ID=mRNA_L-elsbetiae_contig1509.3648.1|Name=mRNA_L-elsbetiae_contig1509.3648.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig1509:14421..14941+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGTAGTCTCCTGGTGGATTGATCACCTCTGTTATGGGCCAAAATC
GCCCAAAATGGTGCACGTTGTGTGCGCGAACTGGCTCTCTCTCCTCTCTC
TTTCTTCCTATACAAAGCTCCCGGCAGCACACTTGAGATGCCGAGAGTTA
GTGCCCTGTAAATACGACGCCAAACCTTTTGGCCTATCATGCTCTTTGGT
GTCTTATCTACGCATGCCCTCACTTTCAGCCTGGATTAACTCCTCTTCGC
CGAGCTTTCAACCTCTCCGTGTCTTGCCAATACTGAGGCTCTATCATCTA
GCCGAAACATGAATGTGCGTAGTCTCCTGGTGGATTGATCACCTCTGTTA
TGGGCCAAAATCGCCCAAAATGGTGCACGTTGTGTGCGCGAACTGGCTCT
CTCTCCTCTCTCTTTCTTCCTATACAAAGCTCCCGGCAGCACACTTGAGA
TGCCGAGAGTTAGTGCCCTGTAAATACGACGCCAAACCTTTTGGCCTATC
ATGCTCTTTGGTGTCTTATCTACGCATGCCCTCACTTTCAGCCTGGATTA
ACTCCTCTTCGCCGAGCTTTCAACCTCTCCGTGTCTTGCCAATACTGAGG
CTCTATCATCTAGCCGAAACATGA
back to top