mRNA_L-elsbetiae_contig1508.3641.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1508.3641.1
Unique NamemRNA_L-elsbetiae_contig1508.3641.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1508.3641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1508contigL-elsbetiae_contig1508:24719..25034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.120034-CDS-L-elsbetiae_contig1508:24718..250331622815612.120034-CDS-L-elsbetiae_contig1508:24718..25033Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1508 24719..25033 +
1691682990.7993338-CDS-L-elsbetiae_contig1508:24718..250331691682990.7993338-CDS-L-elsbetiae_contig1508:24718..25033Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1508 24719..25033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1508.3641.1prot_L-elsbetiae_contig1508.3641.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1508 24719..25033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1508.3641.1

>prot_L-elsbetiae_contig1508.3641.1 ID=prot_L-elsbetiae_contig1508.3641.1|Name=mRNA_L-elsbetiae_contig1508.3641.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
YISCAISRTNPGTTFGVPVAVARGVADLRSCGPVRDQRYHTDRDRRSGHC
RKHRTQPVSASYRSRFLLRGILQRCTCCGRFRQLTGSVLSPRSPKSGKGV
SKGRR
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mRNA from alignment at L-elsbetiae_contig1508:24719..25034+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1508.3641.1 ID=mRNA_L-elsbetiae_contig1508.3641.1|Name=mRNA_L-elsbetiae_contig1508.3641.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=316bp|location=Sequence derived from alignment at L-elsbetiae_contig1508:24719..25034+ (Laminarionema elsbetiae ELsaHSoW15)
TACATCTCGTGCGCAATTAGTAGGACCAATCCAGGGACAACGTTTGGCGT
ACCCGTAGCCGTTGCTCGCGGTGTCGCAGATCTCAGGTCTTGTGGACCGG
TCAGAGACCAGAGATATCATACAGACAGAGATCGACGATCGGGACATTGT
CGAAAACATCGGACACAGCCAGTCAGTGCATCCTACAGATCACGGTTTTT
ATTGAGGGGGATCCTGCAGCGTTGTACTTGCTGTGGGCGCTTTCGGCAGC
TCACGGGGTCTGTCCTAAGCCCGAGAAGCCCTAAGTCGGGCAAAGGAGTT
TCGAAGGGACGGCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1508:24719..25034+

>mRNA_L-elsbetiae_contig1508.3641.1 ID=mRNA_L-elsbetiae_contig1508.3641.1|Name=mRNA_L-elsbetiae_contig1508.3641.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig1508:24719..25034+ (Laminarionema elsbetiae ELsaHSoW15)
TACATCTCGTGCGCAATTAGTAGGACCAATCCAGGGACAACGTTTGGCGT
ACCCGTAGCCGTTGCTCGCGGTGTCGCAGATCTCAGGTCTTGTGGACCGG
TCAGAGACCAGAGATATCATACAGACAGAGATCGACGATCGGGACATTGT
CGAAAACATCGGACACAGCCAGTCAGTGCATCCTACAGATCACGGTTTTT
ATTGAGGGGGATCCTGCAGCGTTGTACTTGCTGTGGGCGCTTTCGGCAGC
TCACGGGGTCTGTCCTAAGCCCGAGAAGCCCTAAGTCGGGCAAAGGAGTT
TCGAAGGGACGGCGATACATCTCGTGCGCAATTAGTAGGACCAATCCAGG
GACAACGTTTGGCGTACCCGTAGCCGTTGCTCGCGGTGTCGCAGATCTCA
GGTCTTGTGGACCGGTCAGAGACCAGAGATATCATACAGACAGAGATCGA
CGATCGGGACATTGTCGAAAACATCGGACACAGCCAGTCAGTGCATCCTA
CAGATCACGGTTTTTATTGAGGGGGATCCTGCAGCGTTGTACTTGCTGTG
GGCGCTTTCGGCAGCTCACGGGGTCTGTCCTAAGCCCGAGAAGCCCTAAG
TCGGGCAAAGGAGTTTCGAAGGGACGGCGA
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