mRNA_L-elsbetiae_contig1507.3636.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1507.3636.1 vs. uniprot
Match: D7G823_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G823_ECTSI) HSP 1 Score: 735 bits (1898), Expect = 1.770e-263 Identity = 394/481 (81.91%), Postives = 414/481 (86.07%), Query Frame = 1
Query: 1 MVVSEEGVRGGQDHLRSDETWPEEDSEEGIAYQMLHGMRMADGSALSSVPLHAVREGAGGADTHFVEAFYASDARSWLLRSRVDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDRHNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRVSYQLVPAGRSAASRDTLYGRLLHAIGDEAASELWTRLGAEDWLVRTIARAEFPFSYRHQLAELPSPRKSDAAXXXXXXXXXXXXXXXXXXXXXXXADLPCSLHDGNR-PERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLDPASAHGIGRNGGGGGSHAGHTGG--ETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMDGSGAAGKGVGSSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDRGDIDEWVALRGDKGSSW 1434
MVVSEEGVRGGQDHLRSDE WP+EDSEE +AYQ+L+GMR DGSAL+SVPLHAVREGAG ADTHFVEAFYASDAR WL RSRVDPAGP+AG RVRKWE+MGIVQRV KAE G IHFRG RH+GD LLRFVDRWDVEHCGESAGAALRAGPLGRVSYQLVP G SA R TL+G LL+AIG+EAA+ELWTRLGAEDWLVRT+ARAEFPFSYRHQLAEL S R S A XXXXXXXXXXXXXADLPCSLHDGNR PERDA+CLCVFEHLCRNALFRRLRLPHRFQALV+VQLLGLKNLSPHYHP+KTDVFAAVSLKRLD +A G G + E AAKRRGRNTSVTAIKRLLPTANGQ SQQSRWGAKAAFRFPLPEEASP VLAYGDGAYELVM G+G G G SQGPPRCVRIAVWRKQFLADQRLGEVDVPLG+LDDRGDIDEWVALRGDKGSSW
Sbjct: 1 MVVSEEGVRGGQDHLRSDEAWPDEDSEERVAYQLLNGMRRPDGSALASVPLHAVREGAG-ADTHFVEAFYASDARGWLTRSRVDPAGPAAGDRVRKWESMGIVQRVTKAERGGSQIHFRGGRHHGDALLRFVDRWDVEHCGESAGAALRAGPLGRVSYQLVPGGGSAPGRGTLHGELLYAIGEEAAAELWTRLGAEDWLVRTVARAEFPFSYRHQLAELASHRGSRVAPAADTAVTSAXXXXXXXXXXXXXADLPCSLHDGNRRPERDAYCLCVFEHLCRNALFRRLRLPHRFQALVSVQLLGLKNLSPHYHPAKTDVFAAVSLKRLDMTAAGGNGNDXXXXXXXXXXXXXXXEAAAKRRGRNTSVTAIKRLLPTANGQESQQSRWGAKAAFRFPLPEEASPLVLAYGDGAYELVMGGTGKGGMG---SQGPPRCVRIAVWRKQFLADQRLGEVDVPLGKLDDRGDIDEWVALRGDKGSSW 477
BLAST of mRNA_L-elsbetiae_contig1507.3636.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE) HSP 1 Score: 741 bits (1914), Expect = 7.210e-240 Identity = 403/481 (83.78%), Postives = 425/481 (88.36%), Query Frame = 1
Query: 1 MVVSEEGVRGGQDHLRSDETWPEEDSEEGIAYQMLHGMRMADGSALSSVPLHAVREGAGGADTHFVEAFYASDARSWLLRSRVDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDRHNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRVSYQLVPAGRSAASRDTLYGRLLHAIGDEAASELWTRLGAEDWLVRTIARAEFPFSYRHQLAELPSPRKSDAAXXXXXXXXXXXXXXXXXXXXXXX--ADLPCSLHDGNR-PERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLDPASAHGIGRNGGGGGSHAGHTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMDGSGAAGKGVGSSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDRGDIDEWVALRGDKGSSW 1434
MVVSEEGVRGGQDHLRSDE WP+EDSEE +AYQ+L+GMR DGSAL+SVPLHAVREGAG ADTHFVEAFYASDAR WL RSRVDPAGP+AG RVRKWE+MGIVQRV KAE G IH RG RH+GD LLRFVDRWDVEHCGESAGAALRAGPLGRVSYQLVP G SA R TL+G LL+AIG+EAA+ELWTRLGAEDWLVRT+ARAEFPFSYRHQLAEL R S A XXXXXXXXXXXXXXXXXXXXXX ADLPCSLHDGNR PERDA+CLCVFEHLCRNALFRRLRLPHRFQALV+VQLLGLKNLSPHYHP+KTDVFAAVSLKRLD +A G GH+GGE AAKRRGRNTSVTAIKRLLPTANGQ +QQSRWGAKAAFRFPLPEEASP+VLAYGDGAYELVM G+G G G SQGPPRCVRIAVWRKQFLADQRLGEVDVPLG+LDDRGDIDEWVALRGDKGSSW
Sbjct: 3428 MVVSEEGVRGGQDHLRSDEAWPDEDSEERVAYQLLNGMRRPDGSALASVPLHAVREGAG-ADTHFVEAFYASDARDWLTRSRVDPAGPAAGDRVRKWESMGIVQRVTKAERGGSQIHLRGGRHHGDALLRFVDRWDVEHCGESAGAALRAGPLGRVSYQLVPGGGSAPGRGTLHGELLYAIGEEAAAELWTRLGAEDWLVRTVARAEFPFSYRHQLAELAFHRGSHVAAXXXXXXXXXXXXXXXXXXXXXXXXADLPCSLHDGNRRPERDAYCLCVFEHLCRNALFRRLRLPHRFQALVSVQLLGLKNLSPHYHPAKTDVFAAVSLKRLDMTAAGSNGNGNYAAXXXXGHSGGEAAAKRRGRNTSVTAIKRLLPTANGQENQQSRWGAKAAFRFPLPEEASPFVLAYGDGAYELVMGGTGKGGMG---SQGPPRCVRIAVWRKQFLADQRLGEVDVPLGKLDDRGDIDEWVALRGDKGSSW 3904
BLAST of mRNA_L-elsbetiae_contig1507.3636.1 vs. uniprot
Match: A0A836C890_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C890_9STRA) HSP 1 Score: 130 bits (327), Expect = 6.790e-31 Identity = 84/212 (39.62%), Postives = 110/212 (51.89%), Query Frame = 1
Query: 799 DAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLDPASAHGIGRNGGGGGSHAGHTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMDGSGAAGKGVGSSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDRGDIDEWVALRGDKGSSW 1434
D + C+FEHL RNAL RRLRLPHRF ALV V+L LKNLSPH+ DVFA L+R A A SH T G ++VT R++P A +A +Q WG FR+ LPE+A P + G + VM A G + GPP +++AV++K L+D LG +VPL L+ +DEW L+ K W
Sbjct: 22 DPYSSCLFEHLARNALLRRLRLPHRFLALVQVELHDLKNLSPHFQAQPMDVFAVARLQRGASAPA-----------SHKHPTLG----------SAVTDAHRVVPCAEAKAGRQ--WGGATIFRYALPEDALPLIDVSGALSAPAVMRRHPAGG-----APGPPSVLQLAVFKKSLLSDDCLGGTEVPLHSLNAHTTLDEWYPLKHVKHKRW 205
BLAST of mRNA_L-elsbetiae_contig1507.3636.1 vs. uniprot
Match: A0A7S3Y602_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y602_HETAK) HSP 1 Score: 122 bits (306), Expect = 2.810e-28 Identity = 84/289 (29.07%), Postives = 128/289 (44.29%), Query Frame = 1
Query: 568 WTRLGAEDWLVRTIARAEFPFSYRHQLAELPSPRKSDAAXXXXXXXXXXXXXXXXXXXXXXXADLPCSLHDGNRPERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLDPASAHGIGRNGGGGGSHAGHTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMDGSGAAGKGVGSSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDRGDIDEWVALRGDKGSSW 1434
W L E WL++ +A A +P + R LA P SLH D + C HL R+ LF RLR+PHR+ ALV +LL LK L+P P+K +V+A + L+R + + K R ++ +T ++++ +S+ + WG KAAFRFPLPE Y+ G Y ++ +G P+ + I V+ K F+ D LG+V++PL + D +DEW+ LR +KG+SW
Sbjct: 13 WAALRGESWLLQAVASAGYPTAARGDLAA------------------------------------PGSLHG-----LDPYAACAARHLYRSLLFARLRMPHRYLALVQAELLDLKKLAPTPSPAKMEVYAVLRLQRRGSSVV--------------------LSNKTRTLDSVMTQPEKIV---TDSSSRSTPWGGKAAFRFPLPEA---YLRLDGPADYRQAVN------------RGAPKVLHICVYSKHFIMDSCLGDVEIPLTAITDNNHLDEWLPLRCEKGTSW 222
BLAST of mRNA_L-elsbetiae_contig1507.3636.1 vs. uniprot
Match: B8CG37_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG37_THAPS) HSP 1 Score: 107 bits (267), Expect = 8.270e-21 Identity = 116/442 (26.24%), Postives = 176/442 (39.82%), Query Frame = 1
Query: 139 SSVPLHAVREGAGGADTHFVEAFYASDARSWLLRSRVDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDRHNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRVSYQLVPAGRSAASRDTLYGRLLHAIGDEAASELWTRLGAEDWLVRTIARAEFPFSYRHQLAELPSPRKSDAAXXXXXXXXXXXXXXXXXXXXXXXADLPCSLHDGNRPERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLDPASAHGIGRNGGGGGSHAGHTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSR---------WGAKAAFRFPLPEEASPYVLAYGDGAYELVMDGSGAAGKGVGSSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDRGDIDEWVALR-GDKGSSW 1434
S V +R G G ++ V F DA WL+ + A R+R E + +++ + ++ + + + + RFVD W+VE AG A LGR Y + G AA+ + +++ A G LW+ + L + + A H E DA DL + G E + + +HL N+LFRRL+LP RF AL+ V+LL LKN++ PS T A +L RL KR+G + + R L +A QA + S+ WG+ FRFPLPE+ + ++ L +GPP C+++ V+ K+F++D LG DV L L G I+EWV LR G G +W
Sbjct: 3059 SGVDFRTLRVGEPG-NSVIVVLFNKQDAIKWLVANETGNDETEALERLRVMELLRVIEPITSSDLSLPK-GYAATHPSTSSQYRFVDPWEVEALESKAGETASAA-LGRGKYHTLSVGLIAAACE----KIVRASGGLHLLGLWSTMKGGISLTKALCSA-------HPAWE------RDAG-----------------------GDL--QMKGGFLMEPSPYENSIRQHLYGNSLFRRLKLPQRFLALIQVELLDLKNVTS---PSGTSSLTAYALLRL----------------------------KRQGSSAPLNHKARSLDSACTQARKISKISGPNAPASWGSLVRFRFPLPEDVNCEGKSFDSDRESLF--------------KGPPTCLQVTVYEKKFMSDVELGGADVNLESLGSGGQIEEWVPLRVGKDGITW 3410
BLAST of mRNA_L-elsbetiae_contig1507.3636.1 vs. uniprot
Match: A0A7S3V8S0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8S0_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.080e-15 Identity = 116/432 (26.85%), Postives = 172/432 (39.81%), Query Frame = 1
Query: 139 SSVPLHAVREGAGGADTHFVEAFYASDARSWLLRSRVDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDR----HNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRVSYQLVPAGRSAASRDTLYGRL--LHAIGDEAASELWTRLGAEDWLVRTIARAEFPFSYRHQLAELPSPRKSDAAXXXXXXXXXXXXXXXXXXXXXXXADLPCSLHDGNRPERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNL-SPHYHPSKTDVFAAVSLKRLDPASAHGIGRNGGGGGSHAGHTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMDGSGAAGKGVGSSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDRGDIDEWVALR 1413
S V +R G G + V F S A W+++S + A R+ E ++++V+ A D + + RFVD W+VE ES A LR LGR Y G A + + L LH + LW IAR + LA + P + DA DL + +G + + +HL RNALFRRLRLP RF A + V++L LKNL SP PS T +A + LKR D ++A K R ++ T K++ + A + WG+ FRFPLPE + +++ D E + G+ P ++I+ + K+F+ + LG D+ L L G ++EWV LR
Sbjct: 704 SGVEFRTLRVGEAG-HSAVVVLFRKSQAIKWMIKSGAESDETDAVKRLDIMEKRRVIEQVDINTIAFEKHQDSDDNEFTEYKKEIRYRFVDPWEVETI-ESKDAELRGASLGRQHYVPFTIGAVARACEDSQRHLGGLHLLS------LWA-----------IARGGVCLT--KALASVYPPWERDAG-----------------------GDL--QVREGIVTQPTTYANSFRQHLYRNALFRRLRLPQRFLAFIQVEILDLKNLTSPGGSPSVT-AYALLRLKR-DASNA-------------------PLTHKARTLDSVSTDPKKISRGSGPNAP--ASWGSVVRFRFPLPEGVNCDGVSF-DSDREALFKGA-------------PSVLQISAYEKKFMTNSSLGGADIHLDALSTSGQLEEWVPLR 1052
BLAST of mRNA_L-elsbetiae_contig1507.3636.1 vs. uniprot
Match: A0A7S3V901_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V901_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.280e-15 Identity = 116/432 (26.85%), Postives = 172/432 (39.81%), Query Frame = 1
Query: 139 SSVPLHAVREGAGGADTHFVEAFYASDARSWLLRSRVDPAGPSAGARVRKWENMGIVQRVNKAEWAGGHIHFRGDR----HNGDTLLRFVDRWDVEHCGESAGAALRAGPLGRVSYQLVPAGRSAASRDTLYGRL--LHAIGDEAASELWTRLGAEDWLVRTIARAEFPFSYRHQLAELPSPRKSDAAXXXXXXXXXXXXXXXXXXXXXXXADLPCSLHDGNRPERDAFCLCVFEHLCRNALFRRLRLPHRFQALVTVQLLGLKNL-SPHYHPSKTDVFAAVSLKRLDPASAHGIGRNGGGGGSHAGHTGGETAAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMDGSGAAGKGVGSSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGRLDDRGDIDEWVALR 1413
S V +R G G + V F S A W+++S + A R+ E ++++V+ A D + + RFVD W+VE ES A LR LGR Y G A + + L LH + LW IAR + LA + P + DA DL + +G + + +HL RNALFRRLRLP RF A + V++L LKNL SP PS T +A + LKR D ++A K R ++ T K++ + A + WG+ FRFPLPE + +++ D E + G+ P ++I+ + K+F+ + LG D+ L L G ++EWV LR
Sbjct: 1675 SGVEFRTLRVGEAG-HSAVVVLFRKSQAIKWMIKSGAESDETDAVKRLDIMEKRRVIEQVDINTIAFEKHQDSDDNEFTEYKKEIRYRFVDPWEVETI-ESKDAELRGASLGRQHYVPFTIGAVARACEDSQRHLGGLHLLS------LWA-----------IARGGVCLT--KALASVYPPWERDAG-----------------------GDL--QVREGIVTQPTTYANSFRQHLYRNALFRRLRLPQRFLAFIQVEILDLKNLTSPGGSPSVT-AYALLRLKR-DASNA-------------------PLTHKARTLDSVSTDPKKISRGSGPNAP--ASWGSVVRFRFPLPEGVNCDGVSF-DSDREALFKGA-------------PSVLQISAYEKKFMTNSSLGGADIHLDALSTSGQLEEWVPLR 2023
BLAST of mRNA_L-elsbetiae_contig1507.3636.1 vs. uniprot
Match: A0A8J2WZR4_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZR4_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 2.190e-6 Identity = 62/216 (28.70%), Postives = 92/216 (42.59%), Query Frame = 1
Query: 829 LCRNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVSLKRLDPAS-AHGIGRNGGGGGSHAGHTGGET----AAKRRGRNTSVTAIKRLLPTANGQASQQSRWGAKAAFRFPLPEEASPYVLAYGDGAYELVMDGSGAAGKGVGSSQGPPRCVRIAVWRKQFLA---------DQRLGEVDVPLGRLDDRGDIDEWVALRGDKGSSW 1434
L RNA FRR L RF A V V L L+ ++ P + AA + +R P A + R HA G + + K R R++ + + + G + WGA AAFRF LP+EA P + L ++GPP + V+R++ A + LG+V+VPL L + + +W+ L G KG W
Sbjct: 1778 LLRNAWFRRHGLKRRFSASVRVDLEALETMAGALSPGAAE--AAQAAQRAPPVDDAFAVLRL-----RHARPKGSQAPPPLSEKLRTRDSCIAKRRGKVHVGGG-----ATWGAAAAFRFALPDEALPP-----QNSVRLP-------------TRGPPTVAYVCVYRREKHALAALGVPAQETYLGDVEVPLDNLTEDQPLTQWLPLNGGKGQHW 1963 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1507.3636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1507.3636.1 >prot_L-elsbetiae_contig1507.3636.1 ID=prot_L-elsbetiae_contig1507.3636.1|Name=mRNA_L-elsbetiae_contig1507.3636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=479bp MVVSEEGVRGGQDHLRSDETWPEEDSEEGIAYQMLHGMRMADGSALSSVPback to top mRNA from alignment at L-elsbetiae_contig1507:911..6905- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1507.3636.1 ID=mRNA_L-elsbetiae_contig1507.3636.1|Name=mRNA_L-elsbetiae_contig1507.3636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5995bp|location=Sequence derived from alignment at L-elsbetiae_contig1507:911..6905- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1507:911..6905- >mRNA_L-elsbetiae_contig1507.3636.1 ID=mRNA_L-elsbetiae_contig1507.3636.1|Name=mRNA_L-elsbetiae_contig1507.3636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2874bp|location=Sequence derived from alignment at L-elsbetiae_contig1507:911..6905- (Laminarionema elsbetiae ELsaHSoW15)back to top |