mRNA_L-elsbetiae_contig15068.3634.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI) HSP 1 Score: 196 bits (497), Expect = 2.540e-58 Identity = 97/118 (82.20%), Postives = 98/118 (83.05%), Query Frame = 1 Query: 1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQGSPTTXXXXXXXTAS-----------DLKPIRRGR 321 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDV+NRFNLIQRRNKRAQGSPTT TA LKPIRRGR Sbjct: 318 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVQNRFNLIQRRNKRAQGSPTTTTTAPPATAQLAPLPTPAPVPSLKPIRRGR 435
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE) HSP 1 Score: 191 bits (486), Expect = 4.630e-54 Identity = 95/118 (80.51%), Postives = 96/118 (81.36%), Query Frame = 1 Query: 1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQGSPTTXXXXXXXTASD-----------LKPIRRGR 321 WSDLA+HIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQGSPT T LKPIRRGR Sbjct: 1056 WSDLAKHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQGSPTITTTAPPATPQXXXXXXXXXXXXLKPIRRGR 1173
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: A0A836CND7_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND7_9STRA) HSP 1 Score: 124 bits (312), Expect = 1.040e-33 Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 1 Query: 1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRA 246 W+ +AR +PGR+AKQCRERYLNHLDP L++ PWT +EE +L+RLC + QWAEICRQL GRSYNDVKNR+NLIQRR KRA Sbjct: 42 WALVARSMPGRVAKQCRERYLNHLDPKLQRG-PWTPEEEQVLLRLCEGQNRQWAEICRQLPGRSYNDVKNRYNLIQRRLKRA 122
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: A0A835Z4W2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W2_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.110e-27 Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1 Query: 1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRR 234 W+++++H+PGR AKQCRERY+NHLDPSLRK PWT +EEA L+ C WAE+ R+ GRSYNDVKNR+ L++RR Sbjct: 1 WAEISKHLPGRDAKQCRERYINHLDPSLRK-APWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 77
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: A0A835YSH7_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSH7_9STRA) HSP 1 Score: 106 bits (264), Expect = 9.050e-27 Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1 Query: 1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRR 234 W+ + H+PGR+ KQCRERYLNHLDPSL+K PWT +E+ALL L N WA+I RQ+ GR NDVKNR+NLIQRR Sbjct: 78 WAQICMHMPGRVGKQCRERYLNHLDPSLKKT-PWTPEEDALLTELHTKMNNSWADIARQMPGRCDNDVKNRWNLIQRR 154
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: D7G0Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z5_ECTSI) HSP 1 Score: 112 bits (280), Expect = 2.620e-26 Identity = 62/123 (50.41%), Postives = 79/123 (64.23%), Query Frame = 1 Query: 1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQGSPTTXXXXXXXT-ASDLKPIRRGRGSTPLAVNASAAAPP 366 WS ++ H+PGR+ KQCRERYLNHLDPSLR PWTE+EE LL+ L NQWAEI RQ+ GRS NDVKNR+NL+ RR + A+ + T A+ + P+ P++ AS APP Sbjct: 649 WSQISDHMPGRVGKQCRERYLNHLDPSLRHG-PWTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAEKNLHRAGSSGSATSAASVPPL-------PVSATASGGAPP 763
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: A0A6H5L2W7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W7_9PHAE) HSP 1 Score: 111 bits (278), Expect = 4.960e-26 Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 1 Query: 1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQ 249 WS ++ H+PGR+ KQCRERYLNHLDPSLR PWTE+EE LL+ L NQWAEI RQ+ GRS NDVKNR+NL+ RR + A+ Sbjct: 1037 WSQISDHMPGRVGKQCRERYLNHLDPSLRHG-PWTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAE 1118
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: D8LH85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH85_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 6.160e-21 Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 1 Query: 1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRR 234 W+ +A +PGR AKQCRERY NH+DP ++KD WT +E+AL+M+L NQ+A+I R + GR Y+DVKNRFNL+ +R Sbjct: 521 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRFNLLVKR 598
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: D2V9F0_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V9F0_NAEGR) HSP 1 Score: 90.5 bits (223), Expect = 1.120e-20 Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1 Query: 1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKR 243 WS +A H+PGRI KQCRER+ NHLDPS++K+ PWTE+EE LL+ N+WAEI + + GR+ N KN FN + R K+ Sbjct: 66 WSMIASHLPGRIGKQCRERWYNHLDPSIKKE-PWTEEEETLLLDAQSKLGNKWAEISKLIVGRTDNACKNHFNSLIAREKK 145
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: A0A1E7EVM5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVM5_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.630e-20 Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1 Query: 1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNR-FNLIQRR 234 W+ +A H+PGR KQCRER++NHLDP L+K WT+DEEA+L+ + N+WA I +QL GRS NDVKN ++ IQR+ Sbjct: 54 WAKIAAHLPGRQGKQCRERFVNHLDPELKKG-EWTDDEEAILIAMHELHGNRWANISKQLPGRSDNDVKNHWYSTIQRK 131 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig15068.3634.1 >prot_L-elsbetiae_contig15068.3634.1 ID=prot_L-elsbetiae_contig15068.3634.1|Name=mRNA_L-elsbetiae_contig15068.3634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQback to top mRNA from alignment at L-elsbetiae_contig15068:499..1438+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig15068.3634.1 ID=mRNA_L-elsbetiae_contig15068.3634.1|Name=mRNA_L-elsbetiae_contig15068.3634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=940bp|location=Sequence derived from alignment at L-elsbetiae_contig15068:499..1438+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig15068:499..1438+ >mRNA_L-elsbetiae_contig15068.3634.1 ID=mRNA_L-elsbetiae_contig15068.3634.1|Name=mRNA_L-elsbetiae_contig15068.3634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig15068:499..1438+ (Laminarionema elsbetiae ELsaHSoW15)back to top |