mRNA_L-elsbetiae_contig15068.3634.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15068.3634.1
Unique NamemRNA_L-elsbetiae_contig15068.3634.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 2.540e-58
Identity = 97/118 (82.20%), Postives = 98/118 (83.05%), Query Frame = 1
Query:    1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQGSPTTXXXXXXXTAS-----------DLKPIRRGR 321
            WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDV+NRFNLIQRRNKRAQGSPTT       TA             LKPIRRGR
Sbjct:  318 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVQNRFNLIQRRNKRAQGSPTTTTTAPPATAQLAPLPTPAPVPSLKPIRRGR 435          
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 4.630e-54
Identity = 95/118 (80.51%), Postives = 96/118 (81.36%), Query Frame = 1
Query:    1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQGSPTTXXXXXXXTASD-----------LKPIRRGR 321
            WSDLA+HIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQGSPT        T              LKPIRRGR
Sbjct: 1056 WSDLAKHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQGSPTITTTAPPATPQXXXXXXXXXXXXLKPIRRGR 1173          
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: A0A836CND7_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.040e-33
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 1
Query:    1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRA 246
            W+ +AR +PGR+AKQCRERYLNHLDP L++  PWT +EE +L+RLC  +  QWAEICRQL GRSYNDVKNR+NLIQRR KRA
Sbjct:   42 WALVARSMPGRVAKQCRERYLNHLDPKLQRG-PWTPEEEQVLLRLCEGQNRQWAEICRQLPGRSYNDVKNRYNLIQRRLKRA 122          
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: A0A835Z4W2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.110e-27
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRR 234
            W+++++H+PGR AKQCRERY+NHLDPSLRK  PWT +EEA L+  C      WAE+ R+  GRSYNDVKNR+ L++RR
Sbjct:    1 WAEISKHLPGRDAKQCRERYINHLDPSLRK-APWTPEEEAALVAHCRETNCHWAEVWRRFPGRSYNDVKNRYYLLERR 77          
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: A0A835YSH7_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSH7_9STRA)

HSP 1 Score: 106 bits (264), Expect = 9.050e-27
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRR 234
            W+ +  H+PGR+ KQCRERYLNHLDPSL+K  PWT +E+ALL  L     N WA+I RQ+ GR  NDVKNR+NLIQRR
Sbjct:   78 WAQICMHMPGRVGKQCRERYLNHLDPSLKKT-PWTPEEDALLTELHTKMNNSWADIARQMPGRCDNDVKNRWNLIQRR 154          
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: D7G0Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z5_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.620e-26
Identity = 62/123 (50.41%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQGSPTTXXXXXXXT-ASDLKPIRRGRGSTPLAVNASAAAPP 366
            WS ++ H+PGR+ KQCRERYLNHLDPSLR   PWTE+EE LL+ L     NQWAEI RQ+ GRS NDVKNR+NL+ RR + A+ +          T A+ + P+       P++  AS  APP
Sbjct:  649 WSQISDHMPGRVGKQCRERYLNHLDPSLRHG-PWTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAEKNLHRAGSSGSATSAASVPPL-------PVSATASGGAPP 763          
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: A0A6H5L2W7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.960e-26
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 1
Query:    1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQ 249
            WS ++ H+PGR+ KQCRERYLNHLDPSLR   PWTE+EE LL+ L     NQWAEI RQ+ GRS NDVKNR+NL+ RR + A+
Sbjct: 1037 WSQISDHMPGRVGKQCRERYLNHLDPSLRHG-PWTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAE 1118          
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: D8LH85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH85_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 6.160e-21
Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRR 234
            W+ +A  +PGR AKQCRERY NH+DP ++KD  WT +E+AL+M+L     NQ+A+I R + GR Y+DVKNRFNL+ +R
Sbjct:  521 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRFNLLVKR 598          
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: D2V9F0_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V9F0_NAEGR)

HSP 1 Score: 90.5 bits (223), Expect = 1.120e-20
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKR 243
            WS +A H+PGRI KQCRER+ NHLDPS++K+ PWTE+EE LL+       N+WAEI + + GR+ N  KN FN +  R K+
Sbjct:   66 WSMIASHLPGRIGKQCRERWYNHLDPSIKKE-PWTEEEETLLLDAQSKLGNKWAEISKLIVGRTDNACKNHFNSLIAREKK 145          
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Match: A0A1E7EVM5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVM5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.630e-20
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNR-FNLIQRR 234
            W+ +A H+PGR  KQCRER++NHLDP L+K   WT+DEEA+L+ +     N+WA I +QL GRS NDVKN  ++ IQR+
Sbjct:   54 WAKIAAHLPGRQGKQCRERFVNHLDPELKKG-EWTDDEEAILIAMHELHGNRWANISKQLPGRSDNDVKNHWYSTIQRK 131          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15068.3634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJZ9_ECTSI2.540e-5882.20Putative c-myb-like transcription factor n=1 Tax=E... [more]
A0A6H5JMK3_9PHAE4.630e-5480.51MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A836CND7_9STRA1.040e-3370.73Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A835Z4W2_9STRA2.110e-2760.26Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835YSH7_9STRA9.050e-2762.82Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
D7G0Z5_ECTSI2.620e-2650.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2W7_9PHAE4.960e-2663.86MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LH85_ECTSI6.160e-2155.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D2V9F0_NAEGR1.120e-2053.09Predicted protein (Fragment) n=1 Tax=Naegleria gru... [more]
A0A1E7EVM5_9STRA1.630e-2054.43Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15068contigL-elsbetiae_contig15068:499..1438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.2
Seed ortholog evalue4.6e-48
Seed eggNOG ortholog2880.D7FJZ9
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Exons2
Model size381
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.4971313-CDS-L-elsbetiae_contig15068:498..6541622815611.4971313-CDS-L-elsbetiae_contig15068:498..654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15068 499..654 +
1691682990.3689194-CDS-L-elsbetiae_contig15068:498..6541691682990.3689194-CDS-L-elsbetiae_contig15068:498..654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15068 499..654 +
1622815611.5140173-CDS-L-elsbetiae_contig15068:1215..14371622815611.5140173-CDS-L-elsbetiae_contig15068:1215..1437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15068 1216..1437 +
1691682990.3798947-CDS-L-elsbetiae_contig15068:1215..14371691682990.3798947-CDS-L-elsbetiae_contig15068:1215..1437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15068 1216..1437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15068.3634.1prot_L-elsbetiae_contig15068.3634.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15068 499..1437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15068.3634.1

>prot_L-elsbetiae_contig15068.3634.1 ID=prot_L-elsbetiae_contig15068.3634.1|Name=mRNA_L-elsbetiae_contig15068.3634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
WSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQ
NQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQGSPTTPSTPATPTASDL
KPIRRGRGSTPLAVNASAAAPPVAAA
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mRNA from alignment at L-elsbetiae_contig15068:499..1438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15068.3634.1 ID=mRNA_L-elsbetiae_contig15068.3634.1|Name=mRNA_L-elsbetiae_contig15068.3634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=940bp|location=Sequence derived from alignment at L-elsbetiae_contig15068:499..1438+ (Laminarionema elsbetiae ELsaHSoW15)
TGGTCCGACCTAGCGAGACACATCCCGGGGCGCATCGCCAAGCAGTGCCG CGAGCGCTACCTGAACCATCTCGACCCCAGCCTCCGCAAGGACATGCCGT GGACCGAGGACGAGGAGGCGCTCCTGATGCGCCTGTGCTTCGCAAAGCAA AACCAGGTGGGTCGCCGGCCGTCTGTCTCTAAAATAAAACAAAGAATCAA AGATGGAACCTAACCCATACTAGAGCAAAGACTCGATATGGGGTTCAAAC GGTGATCCATACAGAGACGTAATATTTGGCGAAGCGAGCAGAAAAAGCAA CCTAAATATCAGAAGAATTCAACATGTCTCTATGCAACACCCGAATGGTA CCCCCGACAGAGAGAGAGAAAGAGAGAGAGAGAGAGTGAACAAAGCGAGA CGTCTTCTGGAACACGTCTGTCCGTAGATTCTATGGTAGTAGCTTTTCCA GAGAACGTCAGCGGTTTGCGTTGCCGCTGCTTCTTTCCTTGCTCCCTGTC CACCGCCCGCCGTAAAGCGTGCTTTCGGTTTGCGCGCTTGAGTCAATACA TTTTGGTGGTATCGTCCCCCGCTGCTCCGTGCCGCAGCCTTCCTAACTGC TCCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCATCTAT CCTCCCTGTCAAACCAGTGGGCCGAAATATGCCGCCAGCTTCACGGGCGC AGCTATAACGACGTCAAGAACCGCTTCAACCTCATCCAGCGACGCAACAA GCGGGCCCAGGGCTCGCCCACCACGCCCTCGACCCCTGCCACCCCCACCG CCTCCGACCTCAAGCCCATCCGCCGCGGCAGAGGAAGCACCCCCCTCGCT GTCAACGCCTCCGCCGCCGCCCCCCCCGTCGCGGCCGCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15068:499..1438+

>mRNA_L-elsbetiae_contig15068.3634.1 ID=mRNA_L-elsbetiae_contig15068.3634.1|Name=mRNA_L-elsbetiae_contig15068.3634.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig15068:499..1438+ (Laminarionema elsbetiae ELsaHSoW15)
TGGTCCGACCTAGCGAGACACATCCCGGGGCGCATCGCCAAGCAGTGCCG
CGAGCGCTACCTGAACCATCTCGACCCCAGCCTCCGCAAGGACATGCCGT
GGACCGAGGACGAGGAGGCGCTCCTGATGCGCCTGTGCTTCGCAAAGCAA
AACCAGTGGTCCGACCTAGCGAGACACATCCCGGGGCGCATCGCCAAGCA
GTGCCGCGAGCGCTACCTGAACCATCTCGACCCCAGCCTCCGCAAGGACA
TGCCGTGGACCGAGGACGAGGAGGCGCTCCTGATGCGCCTGTGCTTCGCA
AAGCAAAACCAGTGGGCCGAAATATGCCGCCAGCTTCACGGGCGCAGCTA
TAACGACGTCAAGAACCGCTTCAACCTCATCCAGCGACGCAACAAGCGGG
CCCAGGGCTCGCCCACCACGCCCTCGACCCCTGCCACCCCCACCGCCTCC
GACCTCAAGCCCATCCGCCGCGGCAGAGGAAGCACCCCCCTCGCTGTCAA
CGCCTCCGCCGCCGCCCCCCCCGTCGCGGCCGCCTGGGCCGAAATATGCC
GCCAGCTTCACGGGCGCAGCTATAACGACGTCAAGAACCGCTTCAACCTC
ATCCAGCGACGCAACAAGCGGGCCCAGGGCTCGCCCACCACGCCCTCGAC
CCCTGCCACCCCCACCGCCTCCGACCTCAAGCCCATCCGCCGCGGCAGAG
GAAGCACCCCCCTCGCTGTCAACGCCTCCGCCGCCGCCCCCCCCGTCGCG
GCCGCC
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