mRNA_L-elsbetiae_contig14993.3578.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14993.3578.1
Unique NamemRNA_L-elsbetiae_contig14993.3578.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14993.3578.1 vs. uniprot
Match: A0A6H5KWL7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL7_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.120e-7
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 2 
Query:  245 TLDMLSVVQRLHDVLARKKCTAIFACFVDLTKAY 346
            TLDML  +QRLH+ LARKK TA+FACFVDLTKAY
Sbjct:  112 TLDMLFAIQRLHE-LARKKSTAVFACFVDLTKAY 144
[Close]
BLAST of mRNA_L-elsbetiae_contig14993.3578.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 5.980e-7
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 2 
Query:  245 TLDMLSVVQRLHDVLARKKCTAIFACFVDLTKAY 346
            TLDML  +QRLHD LARKK TA+FACFVDLTKAY
Sbjct:   50 TLDMLFAIQRLHD-LARKKSTAVFACFVDLTKAY 82
[Close]
BLAST of mRNA_L-elsbetiae_contig14993.3578.1 vs. uniprot
Match: A0A6H5KS16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS16_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.540e-7
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 2 
Query:  245 TLDMLSVVQRLHDVLARKKCTAIFACFVDLTKAY 346
            TLDML  +QRLH+ LARKK TA+FACFVDLTKAY
Sbjct:  107 TLDMLFAIQRLHE-LARKKSTAVFACFVDLTKAY 139
[Close]
BLAST of mRNA_L-elsbetiae_contig14993.3578.1 vs. uniprot
Match: A0A6H5L6C1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.180e-7
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 2 
Query:  245 TLDMLSVVQRLHDVLARKKCTAIFACFVDLTKAY 346
            TLDML  +QRLH+ LARKK TA+FACFVDLTKAY
Sbjct:   83 TLDMLFAIQRLHE-LARKKSTAVFACFVDLTKAY 115
[Close]
BLAST of mRNA_L-elsbetiae_contig14993.3578.1 vs. uniprot
Match: A0A6H5JWA1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.280e-7
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 2 
Query:  245 TLDMLSVVQRLHDVLARKKCTAIFACFVDLTKAY 346
            TLDML  +QRLH+ LARKK TA+FACFVDLTKAY
Sbjct:   82 TLDMLFAIQRLHE-LARKKSTAVFACFVDLTKAY 114
[Close]
BLAST of mRNA_L-elsbetiae_contig14993.3578.1 vs. uniprot
Match: A0A6H5JLV5_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLV5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.050e-6
Identity = 37/101 (36.63%), Postives = 51/101 (50.50%), Query Frame = 2 
Query:   47 RYGGLNIL-HQANTILMCFPFSLARGRKREDVSRKVEFGDTPLSMCVFGRCVCMYARDWLWNQSDLDTLDMLSVVQRLHDVLARKKCTAIFACFVDLTKAY 346
            +Y G++++ H  N +L      L+   +RE +  + + G  P                         TLDML  +QRLH+ LARKK TA+FACFVDLTKAY
Sbjct:  192 KYRGISLVAHAGNVLLKVVATRLSHYCEREGILPEEQSGFRP----------------------HRSTLDMLFAIQRLHE-LARKKSTAVFACFVDLTKAY 269
[Close]
BLAST of mRNA_L-elsbetiae_contig14993.3578.1 vs. uniprot
Match: A0A6H5KRS5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-6
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 2 
Query:  245 TLDMLSVVQRLHDVLARKKCTAIFACFVDLTKAY 346
            TLDML  +QRLH+ LARKK TA+FACFVDLTKAY
Sbjct:   48 TLDMLFAIQRLHE-LARKKSTAVFACFVDLTKAY 80
[Close]
BLAST of mRNA_L-elsbetiae_contig14993.3578.1 vs. uniprot
Match: A0A6H5KMK7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK7_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.580e-6
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 2 
Query:  245 TLDMLSVVQRLHDVLARKKCTAIFACFVDLTKAY 346
            TLDML  +QRLH+ LARKK TA+FACFVDLTKAY
Sbjct:  133 TLDMLFAIQRLHE-LARKKSTAVFACFVDLTKAY 165
[Close]
BLAST of mRNA_L-elsbetiae_contig14993.3578.1 vs. uniprot
Match: A0A6H5JBU2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU2_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.610e-6
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 2 
Query:  245 TLDMLSVVQRLHDVLARKKCTAIFACFVDLTKAY 346
            TLD+L  +QRLH+ LARKK TA+FACFVDLTKAY
Sbjct:   95 TLDILFAIQRLHE-LARKKSTAVFACFVDLTKAY 127
[Close]
BLAST of mRNA_L-elsbetiae_contig14993.3578.1 vs. uniprot
Match: A0A6H5K7I5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.750e-6
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 2 
Query:  245 TLDMLSVVQRLHDVLARKKCTAIFACFVDLTKAY 346
            TLDML  +QRLH+ LARKK TA+FACFVDLTKAY
Sbjct:  187 TLDMLFAIQRLHE-LARKKSTAVFACFVDLTKAY 219
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14993.3578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWL7_9PHAE4.120e-779.41Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LD24_9PHAE5.980e-782.35Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS16_9PHAE6.540e-779.41Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L6C1_9PHAE8.180e-779.41Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWA1_9PHAE8.280e-779.41Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JLV5_9PHAE1.050e-636.63Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KRS5_9PHAE1.110e-679.41Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMK7_9PHAE1.580e-679.41Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JBU2_9PHAE1.610e-676.47Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K7I5_9PHAE1.750e-679.41Reverse transcriptase domain-containing protein (F... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14993contigL-elsbetiae_contig14993:1580..1957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.7623477-CDS-L-elsbetiae_contig14993:1579..19571622815605.7623477-CDS-L-elsbetiae_contig14993:1579..1957Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14993 1580..1957 +
1691682986.8190215-CDS-L-elsbetiae_contig14993:1579..19571691682986.8190215-CDS-L-elsbetiae_contig14993:1579..1957Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14993 1580..1957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14993.3578.1prot_L-elsbetiae_contig14993.3578.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14993 1580..1957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14993.3578.1

>prot_L-elsbetiae_contig14993.3578.1 ID=prot_L-elsbetiae_contig14993.3578.1|Name=mRNA_L-elsbetiae_contig14993.3578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MKHQKPAVPLLHTNGALWRAQHPASGEYDIDVFSLFARPWAKTRRCQPKS
RVRRYTAIYVCVRQMRMYVRTRLAVEPVGLGHARYAVCGPATPRRVGEEE
VHRDLRMLRRPHQSVYDSVDRELLWD
back to top

mRNA from alignment at L-elsbetiae_contig14993:1580..1957+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14993.3578.1 ID=mRNA_L-elsbetiae_contig14993.3578.1|Name=mRNA_L-elsbetiae_contig14993.3578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig14993:1580..1957+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAACACCAAAAACCTGCCGTTCCCTTACTTCACACCAACGGTGCGCT
ATGGCGGGCTCAACATCCTGCATCAGGCGAATACGATATTGATGTGTTTT
CCCTTTTCGCTCGCCCGTGGGCGAAAACGCGAAGATGTCAGCCGAAAAGT
AGAGTTCGGCGATACACCGCTATCTATGTGTGTGTTCGGCAGATGCGTAT
GTATGTACGCACGCGACTGGCTGTGGAACCAGTCGGACTTGGACACGCTC
GATATGCTGTCTGTGGTCCAGCGACTCCACGACGTGTTGGCGAGGAAGAA
GTGCACCGCGATCTTCGCATGCTTCGTCGACCTCACCAAAGCGTATACGA
CTCGGTGGATCGGGAACTGCTGTGGGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14993:1580..1957+

>mRNA_L-elsbetiae_contig14993.3578.1 ID=mRNA_L-elsbetiae_contig14993.3578.1|Name=mRNA_L-elsbetiae_contig14993.3578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig14993:1580..1957+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAACACCAAAAACCTGCCGTTCCCTTACTTCACACCAACGGTGCGCT
ATGGCGGGCTCAACATCCTGCATCAGGCGAATACGATATTGATGTGTTTT
CCCTTTTCGCTCGCCCGTGGGCGAAAACGCGAAGATGTCAGCCGAAAAGT
AGAGTTCGGCGATACACCGCTATCTATGTGTGTGTTCGGCAGATGCGTAT
GTATGTACGCACGCGACTGGCTGTGGAACCAGTCGGACTTGGACACGCTC
GATATGCTGTCTGTGGTCCAGCGACTCCACGACGTGTTGGCGAGGAAGAA
GTGCACCGCGATCTTCGCATGCTTCGTCGACCTCACCAAAGCGTATACGA
CTCGGTGGATCGGGAACTGCTGTGGGACATGAAACACCAAAAACCTGCCG
TTCCCTTACTTCACACCAACGGTGCGCTATGGCGGGCTCAACATCCTGCA
TCAGGCGAATACGATATTGATGTGTTTTCCCTTTTCGCTCGCCCGTGGGC
GAAAACGCGAAGATGTCAGCCGAAAAGTAGAGTTCGGCGATACACCGCTA
TCTATGTGTGTGTTCGGCAGATGCGTATGTATGTACGCACGCGACTGGCT
GTGGAACCAGTCGGACTTGGACACGCTCGATATGCTGTCTGTGGTCCAGC
GACTCCACGACGTGTTGGCGAGGAAGAAGTGCACCGCGATCTTCGCATGC
TTCGTCGACCTCACCAAAGCGTATACGACTCGGTGGATCGGGAACTGCTG
TGGGAC
back to top