prot_L-elsbetiae_contig14991.3577.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig14991.3577.1
Unique Nameprot_L-elsbetiae_contig14991.3577.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length133
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14991.3577.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.020e-12
Identity = 60/89 (67.42%), Postives = 64/89 (71.91%), Query Frame = 0 
Query:   47 GGGSDGDFGLGAIWGDATTHPFDPGKAEQDVTIDSSSSXXXXXXXXXXXXXXXX---NENGDEGLDETWSGTPTHHFNPGKNFSRGARR 132
            GG   GD GL  IW  A THPFDPGKAE  V+  S   XXXXXXXXXXXXXXXX   + +GDEGLDETWSG PTH F+PG   SRGARR
Sbjct: 1046 GGDGSGDEGLDEIWSGAPTHPFDPGKAEGGVSSSSXXXXXXXXXXXXXXXXXXXXXXDGSGDEGLDETWSGAPTHPFDPGTTCSRGARR 1134
[Close]
BLAST of mRNA_L-elsbetiae_contig14991.3577.1 vs. uniprot
Match: A0A6H5L015_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L015_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 8.470e-6
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0 
Query:  104 GDEGLDETWSGTPTHHFNPGKNFSRGARR 132
            GDEGLDETWSG PTH F+PGK  SRGARR
Sbjct:  215 GDEGLDETWSGAPTHPFDPGKTSSRGARR 243
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14991.3577.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5A7_9PHAE1.020e-1267.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L015_9PHAE8.470e-682.76CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14991contigL-elsbetiae_contig14991:1005..1403 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14991.3577.1mRNA_L-elsbetiae_contig14991.3577.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig14991 1005..1405 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig14991.3577.1 ID=prot_L-elsbetiae_contig14991.3577.1|Name=mRNA_L-elsbetiae_contig14991.3577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
AVCSRHRGVCSRQRRRCQSVVFESDIQHAEGYKSNNSSCSGSRNEGGGGS
DGDFGLGAIWGDATTHPFDPGKAEQDVTIDSSSSSSSSSSNDDGGGDGSG
NENGDEGLDETWSGTPTHHFNPGKNFSRGARRG
back to top