mRNA_L-elsbetiae_contig14987.3573.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14987.3573.1
Unique NamemRNA_L-elsbetiae_contig14987.3573.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14987.3573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14987contigL-elsbetiae_contig14987:2341..3030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size691
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.2891042-CDS-L-elsbetiae_contig14987:2340..27721622815605.2891042-CDS-L-elsbetiae_contig14987:2340..2772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14987 2341..2772 +
1691682986.5522687-CDS-L-elsbetiae_contig14987:2340..27721691682986.5522687-CDS-L-elsbetiae_contig14987:2340..2772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14987 2341..2772 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.3055542-UTR-L-elsbetiae_contig14987:2772..30301622815605.3055542-UTR-L-elsbetiae_contig14987:2772..3030Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14987 2773..3030 +
1691682986.5613272-UTR-L-elsbetiae_contig14987:2772..30301691682986.5613272-UTR-L-elsbetiae_contig14987:2772..3030Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14987 2773..3030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14987.3573.1prot_L-elsbetiae_contig14987.3573.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14987 2341..2772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14987.3573.1

>prot_L-elsbetiae_contig14987.3573.1 ID=prot_L-elsbetiae_contig14987.3573.1|Name=mRNA_L-elsbetiae_contig14987.3573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
IPGPTVAAVRHCFVAIALARARIIHRGRIFRERSKKSPFHVLHDCLTGTT
AFFCTCHYTLKTVLHNTRDFPSIFFLCLVRSVAFFFYFCGPLWLFFAGWL
QSPAGCMCSSFVADVVLVVLPSSTRARPSLWQLCELFGKYHRM*
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mRNA from alignment at L-elsbetiae_contig14987:2341..3030+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14987.3573.1 ID=mRNA_L-elsbetiae_contig14987.3573.1|Name=mRNA_L-elsbetiae_contig14987.3573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig14987:2341..3030+ (Laminarionema elsbetiae ELsaHSoW15)
ATACCTGGTCCAACAGTGGCGGCAGTACGGCATTGTTTCGTCGCCATTGC
ACTCGCACGTGCGCGCATCATACATAGAGGGCGGATATTTAGAGAGCGCA
GCAAGAAATCTCCTTTCCATGTTTTGCATGATTGTTTGACGGGAACAACC
GCGTTTTTCTGCACCTGTCATTATACCCTAAAAACCGTGCTACACAACAC
GCGCGATTTTCCGTCCATTTTTTTTTTGTGTTTGGTGCGCTCCGTGGCGT
TTTTTTTTTATTTTTGCGGGCCTTTGTGGCTTTTTTTTGCCGGCTGGCTG
CAAAGCCCCGCCGGGTGCATGTGCAGTAGCTTTGTTGCGGATGTTGTGCT
TGTCGTGCTCCCCTCGAGCACGCGAGCACGCCCCAGCCTGTGGCAGTTGT
GTGAGCTCTTCGGTAAATACCACCGTATGTGACACAAGATACCACGCCCC
CCTTGGACAGATTTTCAAAGCCCGATTCGATTCCTCCCCAGCAAGAAGAG
CGCTTACTGCAGTAGTGTGCCGAAAGGGGGTGGCGTTGGAAAGATTTAGT
CGAGGGTTCTCTGAAGATGTGTCGTTTGGTGCTGGCACCTTCTCCGTTAC
GGAGTAATGGAGCTCTAAGAGTCGACCCAGGAGGGGGGGTAGTATCTTGT
GTCACCTGCGGCATGTAAGGCTGCCTGAGGCCTGGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14987:2341..3030+

>mRNA_L-elsbetiae_contig14987.3573.1 ID=mRNA_L-elsbetiae_contig14987.3573.1|Name=mRNA_L-elsbetiae_contig14987.3573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig14987:2341..3030+ (Laminarionema elsbetiae ELsaHSoW15)
ATACCTGGTCCAACAGTGGCGGCAGTACGGCATTGTTTCGTCGCCATTGC
ACTCGCACGTGCGCGCATCATACATAGAGGGCGGATATTTAGAGAGCGCA
GCAAGAAATCTCCTTTCCATGTTTTGCATGATTGTTTGACGGGAACAACC
GCGTTTTTCTGCACCTGTCATTATACCCTAAAAACCGTGCTACACAACAC
GCGCGATTTTCCGTCCATTTTTTTTTTGTGTTTGGTGCGCTCCGTGGCGT
TTTTTTTTTATTTTTGCGGGCCTTTGTGGCTTTTTTTTGCCGGCTGGCTG
CAAAGCCCCGCCGGGTGCATGTGCAGTAGCTTTGTTGCGGATGTTGTGCT
TGTCGTGCTCCCCTCGAGCACGCGAGCACGCCCCAGCCTGTGGCAGTTGT
GTGAGCTCTTCGGTAAATACCACCGTATGTGAATACCTGGTCCAACAGTG
GCGGCAGTACGGCATTGTTTCGTCGCCATTGCACTCGCACGTGCGCGCAT
CATACATAGAGGGCGGATATTTAGAGAGCGCAGCAAGAAATCTCCTTTCC
ATGTTTTGCATGATTGTTTGACGGGAACAACCGCGTTTTTCTGCACCTGT
CATTATACCCTAAAAACCGTGCTACACAACACGCGCGATTTTCCGTCCAT
TTTTTTTTTGTGTTTGGTGCGCTCCGTGGCGTTTTTTTTTTATTTTTGCG
GGCCTTTGTGGCTTTTTTTTGCCGGCTGGCTGCAAAGCCCCGCCGGGTGC
ATGTGCAGTAGCTTTGTTGCGGATGTTGTGCTTGTCGTGCTCCCCTCGAG
CACGCGAGCACGCCCCAGCCTGTGGCAGTTGTGTGAGCTCTTCGGTAAAT
ACCACCGTATGTGA
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