mRNA_L-elsbetiae_contig1498.3572.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1498.3572.1
Unique NamemRNA_L-elsbetiae_contig1498.3572.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1498.3572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1498contigL-elsbetiae_contig1498:25003..25909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size907
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1498.3572.1prot_L-elsbetiae_contig1498.3572.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1498 25049..25513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.0803022-UTR-L-elsbetiae_contig1498:25002..250481622815605.0803022-UTR-L-elsbetiae_contig1498:25002..25048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1498 25003..25048 +
1691682986.4297278-UTR-L-elsbetiae_contig1498:25002..250481691682986.4297278-UTR-L-elsbetiae_contig1498:25002..25048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1498 25003..25048 +
1622815605.1065493-UTR-L-elsbetiae_contig1498:25513..259091622815605.1065493-UTR-L-elsbetiae_contig1498:25513..25909Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1498 25514..25909 +
1691682986.4522066-UTR-L-elsbetiae_contig1498:25513..259091691682986.4522066-UTR-L-elsbetiae_contig1498:25513..25909Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1498 25514..25909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.093731-CDS-L-elsbetiae_contig1498:25048..255131622815605.093731-CDS-L-elsbetiae_contig1498:25048..25513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 25049..25513 +
1691682986.4420323-CDS-L-elsbetiae_contig1498:25048..255131691682986.4420323-CDS-L-elsbetiae_contig1498:25048..25513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 25049..25513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1498.3572.1

>prot_L-elsbetiae_contig1498.3572.1 ID=prot_L-elsbetiae_contig1498.3572.1|Name=mRNA_L-elsbetiae_contig1498.3572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
MLSQNCNPGAATAPPTLHQPTATLCYSEKNVENTRKYMQEGKYCSGEEST
TKMYSVYTHYLPRGAPDRHEGIFQPSNAPVELAPLLHTQFKQGGDISKHN
MHTPHPSVSLPRILPYRNSNTPGATTRGLFCRVHSKYRETPSDTRNKTEP
RSLV*
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mRNA from alignment at L-elsbetiae_contig1498:25003..25909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1498.3572.1 ID=mRNA_L-elsbetiae_contig1498.3572.1|Name=mRNA_L-elsbetiae_contig1498.3572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=907bp|location=Sequence derived from alignment at L-elsbetiae_contig1498:25003..25909+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCATTCACAAAGCCCCCCCTTTGACCGACCAGGCCCCCGGGTATATGC
TCTCTCAAAATTGCAACCCCGGGGCCGCCACCGCGCCCCCCACACTCCAT
CAACCAACTGCTACTCTCTGTTATTCGGAGAAAAATGTAGAAAATACACG
TAAATATATGCAAGAGGGAAAATACTGCTCAGGGGAGGAGTCAACCACTA
AGATGTACTCCGTGTATACTCATTATTTACCCCGGGGGGCGCCCGATAGA
CACGAGGGGATTTTCCAGCCATCTAACGCCCCCGTGGAGTTGGCTCCGTT
GCTACATACACAATTTAAGCAGGGGGGGGATATTTCCAAGCACAACATGC
ACACTCCACATCCATCCGTCTCTTTACCTCGGATCCTGCCATACAGAAAT
AGTAATACCCCCGGCGCAACAACTCGCGGACTCTTTTGCCGTGTACACAG
CAAGTACAGAGAAACGCCATCTGACACGCGCAATAAAACCGAACCTCGCT
CCCTCGTCTGACAGCAGTTTTCTGTCTTAAAAAAAGCCCTACTGGTACAC
TTTATTTACCTCCCTAGTACTACCCAAAACCTCTCACAACCCCCCCACCT
CCCCTCCTTCCCAAAGACAAAACCCACAGAACACTCAAAAGCCACAACAA
CAGCACCAACAAACACGCCAACAACAGCAACACCAAACACGCGACGCCCA
CTGTGTGCGCGTGTGCGTGTGCGAGAGAGTGGAGGAACAAGACCAAAGGG
GGCACGGAAGGGGGCCTGCAGTATTAGTACTAGTACATACATCCACCGCA
GGAGGGGGTCCAACCCCCCCCCTCCTATGTGACCCCGGTTGGGTCGTCTA
GCTAGAGTAGAAGTGGAGGATGGGGGCCAGAGGGGCAGACGACAAAATCC
AATAATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1498:25003..25909+

>mRNA_L-elsbetiae_contig1498.3572.1 ID=mRNA_L-elsbetiae_contig1498.3572.1|Name=mRNA_L-elsbetiae_contig1498.3572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig1498:25003..25909+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTCTCAAAATTGCAACCCCGGGGCCGCCACCGCGCCCCCCACACT
CCATCAACCAACTGCTACTCTCTGTTATTCGGAGAAAAATGTAGAAAATA
CACGTAAATATATGCAAGAGGGAAAATACTGCTCAGGGGAGGAGTCAACC
ACTAAGATGTACTCCGTGTATACTCATTATTTACCCCGGGGGGCGCCCGA
TAGACACGAGGGGATTTTCCAGCCATCTAACGCCCCCGTGGAGTTGGCTC
CGTTGCTACATACACAATTTAAGCAGGGGGGGGATATTTCCAAGCACAAC
ATGCACACTCCACATCCATCCGTCTCTTTACCTCGGATCCTGCCATACAG
AAATAGTAATACCCCCGGCGCAACAACTCGCGGACTCTTTTGCCGTGTAC
ACAGCAAGTACAGAGAAACGCCATCTGACACGCGCAATAAAACCGAACCT
CGCTCCCTCGTCTGAATGCTCTCTCAAAATTGCAACCCCGGGGCCGCCAC
CGCGCCCCCCACACTCCATCAACCAACTGCTACTCTCTGTTATTCGGAGA
AAAATGTAGAAAATACACGTAAATATATGCAAGAGGGAAAATACTGCTCA
GGGGAGGAGTCAACCACTAAGATGTACTCCGTGTATACTCATTATTTACC
CCGGGGGGCGCCCGATAGACACGAGGGGATTTTCCAGCCATCTAACGCCC
CCGTGGAGTTGGCTCCGTTGCTACATACACAATTTAAGCAGGGGGGGGAT
ATTTCCAAGCACAACATGCACACTCCACATCCATCCGTCTCTTTACCTCG
GATCCTGCCATACAGAAATAGTAATACCCCCGGCGCAACAACTCGCGGAC
TCTTTTGCCGTGTACACAGCAAGTACAGAGAAACGCCATCTGACACGCGC
AATAAAACCGAACCTCGCTCCCTCGTCTGA
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