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Homology
BLAST of mRNA_L-elsbetiae_contig1498.3570.1 vs. uniprot
Match: D8LHR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR4_ECTSI) HSP 1 Score: 104 bits (260), Expect = 1.300e-20 Identity = 74/173 (42.77%), Postives = 89/173 (51.45%), Query Frame = 1
Query: 454 LPGPKDSN--ALASREKGGGRALCFEEEGQGQEAAEED-------QEKRFF--SLRTS-------------------ISNVSSAPSEPVDIPGARSVREDSGTRNPTGVPSANSLQEEGWVSLWNTYTRLFPGTFIGCSPPDSQPPPDSPLYASSP---------PKRRNASS 855
+PG ++ N + SR RALCF+ E Q + E+ + KRFF S++T+ +VSS SEPVDIPGARS T + EEGWVSLWNTYTRLFPGTF GCSPP S PP DSPLYA+SP P RRN +S
Sbjct: 5 VPGAREENRQGVGSRGYVRARALCFQPEEQKEREVEDQIICQQQHENKRFFGCSVKTAHCDGQQXXXXXXXXXXXXXXXSVSSTMSEPVDIPGARS------TSSSVESGGGAGADEEGWVSLWNTYTRLFPGTFTGCSPPGSAPPLDSPLYAASPXXXXXMNAYPSRRNKAS 171
BLAST of mRNA_L-elsbetiae_contig1498.3570.1 vs. uniprot
Match: A0A6H5J7S5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7S5_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.880e-16 Identity = 88/266 (33.08%), Postives = 109/266 (40.98%), Query Frame = 1
Query: 256 SMALLGRSKPVHLRGSGREDEDAVFAA---EDAKRQRAISPSSPSLGSAAV-----------------CISPVGESIYTLSSPWM----ALPGPKDSN--ALASREKGGGRALCFEEEGQGQEAAEE------DQEKRFFSLRTSISNVSSAP------------------------SEPVDIPGARSVREDSGTRNPTGVPSANSLQEEGWVSLWNTYTRLFPGTFIGCSPPDSQPPPDSPLYASSP----------PKRRNASS 855
S A +P R ++ DA AA ED KR RA+SPS+ S G V G Y SS + A P ++ + + SR RA CF+ E + + E+ + KRFF + ++ SEPVDIPGAR+ EEGWVSLWNTYTRLFPGTF GCSPP S PP DSPLYA+SP P RRN +S
Sbjct: 27 SSAFCQERRPAEYRDGAQDPPDAAAAAPAEEDFKRPRAVSPSALSPGGPEVDDLVXXXXXXXXXXXXXXXXXAGPGGYLCSSTRLMMEKAAPAAREQDWQGVGSRGYVRARAPCFQPEERKERDVEDQITCRYENNKRFFGCGLTTAHCEEXXXXXXXXXXXXXXXXXXXXXXXXTMSEPVDIPGARTXX------XXXXXXXXXXXDEEGWVSLWNTYTRLFPGTFTGCSPPRSTPPLDSPLYAASPRAPPPPMDASPSRRNKAS 286
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 1604 |
Cds size | 1602 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815604.9822838-CDS-L-elsbetiae_contig1498:15135..15699 | 1622815604.9822838-CDS-L-elsbetiae_contig1498:15135..15699 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1498 15136..15699 + |
1691682986.37851-CDS-L-elsbetiae_contig1498:15135..15699 | 1691682986.37851-CDS-L-elsbetiae_contig1498:15135..15699 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1498 15136..15699 + |
1622815604.9943597-CDS-L-elsbetiae_contig1498:16213..16363 | 1622815604.9943597-CDS-L-elsbetiae_contig1498:16213..16363 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1498 16214..16363 + |
1691682986.3899677-CDS-L-elsbetiae_contig1498:16213..16363 | 1691682986.3899677-CDS-L-elsbetiae_contig1498:16213..16363 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1498 16214..16363 + |
1622815605.0054507-CDS-L-elsbetiae_contig1498:17987..18875 | 1622815605.0054507-CDS-L-elsbetiae_contig1498:17987..18875 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1498 17988..18875 + |
1691682986.4044147-CDS-L-elsbetiae_contig1498:17987..18875 | 1691682986.4044147-CDS-L-elsbetiae_contig1498:17987..18875 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1498 17988..18875 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1498.3570.1 >prot_L-elsbetiae_contig1498.3570.1 ID=prot_L-elsbetiae_contig1498.3570.1|Name=mRNA_L-elsbetiae_contig1498.3570.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=534bp
PTRCAARAPCAVDYNSARSCALQIITKGSRSDQLGGRGGINILNRWARGF YRLFSLVERQGFFRGSSKAGHTHITHFRLALPLCYSMALLGRSKPVHLRG SGREDEDAVFAAEDAKRQRAISPSSPSLGSAAVCISPVGESIYTLSSPWM ALPGPKDSNALASREKGGGRALCFEEEGQGQEAAEEDQEKRFFSLRTSIS NVSSAPSEPVDIPGARSVREDSGTRNPTGVPSANSLQEEGWVSLWNTYTR LFPGTFIGCSPPDSQPPPDSPLYASSPPKRRNASSASTPTPTTTTALRRR VSLSPSLSSSSSSSFTGIGAVHGGGGAAPAAATAYASADHCFDGGAPPMH SGGNSSSWTAMSTATTAAAETPRGGATSSARGRANTLPPSPLVLSHSPFD GSRLSPPRPYGRTHRDRHSSQEEEEEEEEKPHKRHGGRSSRSGSGPRSRS RSRPAAVAEESATRDGRPPPAGDEDQHGGEGGGGGGGGGRVLPPGSSWGQ LSRLPLEEVGKALGTFSAKGFSAGVGDRRGGGRV back to topmRNA from alignment at L-elsbetiae_contig1498:15136..18875+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1498.3570.1 ID=mRNA_L-elsbetiae_contig1498.3570.1|Name=mRNA_L-elsbetiae_contig1498.3570.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3740bp|location=Sequence derived from alignment at L-elsbetiae_contig1498:15136..18875+ (Laminarionema elsbetiae ELsaHSoW15) CCGACTAGGTGTGCAGCGCGCGCGCCTTGCGCTGTGGACTATAACAGCGC
TCGCTCGTGTGCCCTACAAATTATAACCAAAGGGTCAAGATCTGACCAGC
TGGGAGGTCGCGGTGGCATCAATATTCTCAACCGCTGGGCGCGGGGTTTT
TATCGCCTGTTTTCATTGGTCGAGCGGCAAGGGTTTTTCCGCGGGTCGTC
GAAGGCAGGACACACACACATCACACACTTTCGCTTGGCGTTGCCTCTCT
GTTATTCCATGGCCTTACTCGGGCGATCTAAGCCCGTGCATCTCCGTGGC
AGCGGCAGGGAAGACGAGGACGCTGTCTTCGCCGCCGAAGACGCCAAGCG
CCAGCGCGCCATCTCTCCGTCCTCGCCGTCGCTTGGGTCGGCTGCCGTCT
GCATTAGCCCTGTGGGGGAATCGATCTACACGTTGAGCTCGCCCTGGATG
GCACTCCCAGGCCCGAAGGACAGCAACGCTCTTGCTTCGAGGGAGAAGGG
TGGCGGTCGAGCGCTGTGCTTCGAAGAGGAGGGGCAGGGGCAAGAGGCAG
CAGAGGAAGATCAGGTGAGGAAACGGTAGATATAAAATAGCTTGAAGAAC
GGTTTGCCTGGTTCAGAGGGGGGGAAAAGAGCGAGCGGAGAGTTCACTTG
TCTCTCCAGTTTTGCTCCTTTGTCGGGCTTCTTGCGTTGCCTTGCACGCT
TTCCCTCGGAAGGGGCGGGCAGGCTTGTCTACGTTCGGGTATTTGCAGAG
CAGCGCGAAAGAGCGAGGGGAGCTGCCTGCAAAGCACGCAAAAGACGCAA
GAATACCGGCGGAATGTTTCGATGTGGAAATAAATGTGTATACGTGTTTT
CTAGCCAAGGAGCTCCGGGAGCTCGCCCAGGCCTACATCGTGCGCTGCAC
GGCTCCAGCATCGAGCGCGATGCGTGTTGCACGCATTTCGCTCGGCTGTG
GCGGTTCTGGATCCAAAATGTTCCTTGCGTCTTGGCTACTGAACGCCACT
TGTTGTATCCCCTGCCCACCCTCGGCGGGCCGTCGTTTTTTGCGCGCAAA
ACAATACGAAAAATCTGTTTTTGTACAGGAGAAGCGCTTCTTCAGCCTGA
GGACATCAATTTCCAACGTGTCCTCGGCGCCTTCGGAGCCAGTGGACATC
CCGGGCGCCCGCAGCGTCAGAGAGGATAGCGGCACCAGAAACCCCACCGG
CGTGCCCAGCGCAAACAGCCTTCAAGAGGTATGTATGTATTCTACGCTTT
GGCGATCAACCACGTGTAGTGTTCCCGGCTCGCGGATTATATTATCTAAT
AATACTCATACTAGTGGGCCAGCTCGCAGTAGTGCTTTGTCACGTATCAC
ACAGCAATTGAACATTTCAGATTTCAACTCGGTGTCTTGTGTCGGATATC
CTCCTCGAACCCGGAAAGTACACAAAGATATAGATATCACATGGGTGTGG
ACGGGAGAAAGAAATAATCGACCCGGCCTCACTACAGTCTCGCTGCTGGC
TGCTGTAAGCACTCGAGAAACGTTTCGTTCCGCCTCCGCCTACTGGGAAG
ATCAGTACGAGAGAGCGCTGCTCTCTTGTCAGAGAGAGATCGCCGTCTCG
GGATCTTTCGTAAAGACCGACAGCCGGGCTTTTTTATTTTCTGTTTTTTC
CCCGCACCGGAAAATAGTTGGAAAAATAGAGCCGGATTTCATGTCTTGCC
CAAGATATATGGCTCTACTCAGGGTTGAGCGGGCGCAGCGCGGCAGATTG
TACATGCAATACATACGCATGTGTATCGTCGTTTCGTGAGAACATCATAT
ATGGGATAACGAATTGTGCGTCCTCACGTTCGAACGCATAATTAATATAT
GTACGAAAGAGGTTTTCGAGCGCTGACCCTGACTTTTTCTTCCGCCGTCG
GAACATGCACACCACCCACCCGTGAAACACGCCGCTTGCGTTCGATCCTA
CTACATCATTCCGTAGAACTTTTGTTTTTTACTCAAGTTCGAGGCTGAAA
ACGCTGCTGTCGATACACCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTGGCGAGGCCTGCTGATGCGATGCGGTACATAGTAAAG
TTCGGGTAGGGTAAGGAGAATAAATGGCTCGTGATTCTGAGATGATGAAT
CCACACACAGACTAGAGATCGGTGCCCTCATTCGTATGAACGGCGTATAA
TAGCCGGGGCTGCACTGGATATATACACGATTCCCGTGCGTATCGGATGC
CGATGCCGTTTCCTCGACCGCAGGTAGACTATCTACATGTTGTACAACGT
TCGAAGCAGAAAACTCCCCCCCCAAACATGTACCCGCTGTGTCCCAAACG
TGGATCATTGTTTGTTCCTTCACAATACATTGCATTTATATAGACTTGCA
TGTAAATATATTATCTAGTCTAATTCATTTTTTCGCGCCTGCATGTACAC
CTAAATGTACACGCACGCGCAAGGATCTGCATGCCCCCGGTGTTGAGAGC
CTTTCGAGTCCCGCCGTGCCAAATTACGCTGATTACTTTGCGCACTTCGA
CCCTTGGCCCATATTATTCTGACCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCTCCGTNNNNTTGAGAGCCTTTCGAGTCCCGCC
GTGCCAAATTACGCTGATTACTTTGCGCACTTCGCCCCTTGGCCCATATT
TTTCTGACCCCCCCCCCCCCCCCCCCCCCTTCCCTCCCCGCTATTTATTG
CGGTATACCCAACGCCCGCCCCGCTCAAAAAAAAAAACGAAAATTATTGC
AGGAGGGGTGGGTCTCCCTGTGGAACACCTACACGAGGCTCTTCCCCGGC
ACGTTCATCGGATGCAGCCCGCCTGACTCGCAGCCCCCCCCGGACTCCCC
GCTGTACGCTTCCTCGCCGCCGAAGCGCCGGAACGCCTCTTCGGCTTCGA
CTCCCACTCCGACTACGACGACGGCATTGCGAAGAAGGGTATCCTTATCC
CCATCTTTGTCCTCCTCCTCCTCCTCCTCCTTCACAGGAATCGGCGCCGT
CCACGGCGGCGGTGGCGCTGCCCCTGCCGCGGCGACCGCATACGCGAGCG
CCGACCACTGCTTCGACGGAGGGGCGCCGCCGATGCACAGCGGCGGCAAC
TCCTCGTCCTGGACCGCGATGTCGACGGCAACAACAGCCGCCGCCGAGAC
CCCCCGCGGCGGCGCGACGTCGTCGGCCCGGGGCCGCGCGAACACGCTGC
CGCCGTCGCCCCTGGTGCTGTCCCATTCCCCGTTCGACGGCTCGCGCCTG
TCGCCGCCGCGGCCGTACGGGAGGACCCACCGCGACCGGCACAGCAGCCA
GGAAGAGGAGGAGGAGGAGGAGGAGAAGCCGCACAAGAGGCACGGTGGGA
GAAGCTCGAGGTCCGGGTCGGGGCCCAGGTCGAGGTCGCGGTCGAGGCCG
GCAGCGGTGGCGGAAGAGTCCGCGACACGCGATGGCCGTCCTCCTCCCGC
CGGCGACGAAGACCAACATGGAGGTGAAGGCGGCGGCGGCGGTGGCGGTG
GCGGCAGGGTTCTCCCGCCCGGGAGCTCCTGGGGGCAGCTCTCCCGACTA
CCCCTCGAAGAGGTGGGGAAGGCCCTCGGCACGTTCTCGGCCAAGGGGTT
CTCCGCCGGCGTTGGGGATAGACGTGGAGGGGGTCGTGTT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1498:15136..18875+ >mRNA_L-elsbetiae_contig1498.3570.1 ID=mRNA_L-elsbetiae_contig1498.3570.1|Name=mRNA_L-elsbetiae_contig1498.3570.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3204bp|location=Sequence derived from alignment at L-elsbetiae_contig1498:15136..18875+ (Laminarionema elsbetiae ELsaHSoW15) CCGACTAGGTGTGCAGCGCGCGCGCCTTGCGCTGTGGACTATAACAGCGC TCGCTCGTGTGCCCTACAAATTATAACCAAAGGGTCAAGATCTGACCAGC TGGGAGGTCGCGGTGGCATCAATATTCTCAACCGCTGGGCGCGGGGTTTT TATCGCCTGTTTTCATTGGTCGAGCGGCAAGGGTTTTTCCGCGGGTCGTC GAAGGCAGGACACACACACATCACACACTTTCGCTTGGCGTTGCCTCTCT GTTATTCCATGGCCTTACTCGGGCGATCTAAGCCCGTGCATCTCCGTGGC AGCGGCAGGGAAGACGAGGACGCTGTCTTCGCCGCCGAAGACGCCAAGCG CCAGCGCGCCATCTCTCCGTCCTCGCCGTCGCTTGGGTCGGCTGCCGTCT GCATTAGCCCTGTGGGGGAATCGATCTACACGTTGAGCTCGCCCTGGATG GCACTCCCAGGCCCGAAGGACAGCAACGCTCTTGCTTCGAGGGAGAAGGG TGGCGGTCGAGCGCTGTGCTTCGAAGAGGAGGGGCAGGGGCAAGAGGCAG CAGAGGAAGATCAGCCGACTAGGTGTGCAGCGCGCGCGCCTTGCGCTGTG GACTATAACAGCGCTCGCTCGTGTGCCCTACAAATTATAACCAAAGGGTC AAGATCTGACCAGCTGGGAGGTCGCGGTGGCATCAATATTCTCAACCGCT GGGCGCGGGGTTTTTATCGCCTGTTTTCATTGGTCGAGCGGCAAGGGTTT TTCCGCGGGTCGTCGAAGGCAGGACACACACACATCACACACTTTCGCTT GGCGTTGCCTCTCTGTTATTCCATGGCCTTACTCGGGCGATCTAAGCCCG TGCATCTCCGTGGCAGCGGCAGGGAAGACGAGGACGCTGTCTTCGCCGCC GAAGACGCCAAGCGCCAGCGCGCCATCTCTCCGTCCTCGCCGTCGCTTGG GTCGGCTGCCGTCTGCATTAGCCCTGTGGGGGAATCGATCTACACGTTGA GCTCGCCCTGGATGGCACTCCCAGGCCCGAAGGACAGCAACGCTCTTGCT TCGAGGGAGAAGGGTGGCGGTCGAGCGCTGTGCTTCGAAGAGGAGGGGCA GGGGCAAGAGGCAGCAGAGGAAGATCAGGAGAAGCGCTTCTTCAGCCTGA GGACATCAATTTCCAACGTGTCCTCGGCGCCTTCGGAGCCAGTGGACATC CCGGGCGCCCGCAGCGTCAGAGAGGATAGCGGCACCAGAAACCCCACCGG CGTGCCCAGCGCAAACAGCCTTCAAGAGGAGAAGCGCTTCTTCAGCCTGA GGACATCAATTTCCAACGTGTCCTCGGCGCCTTCGGAGCCAGTGGACATC CCGGGCGCCCGCAGCGTCAGAGAGGATAGCGGCACCAGAAACCCCACCGG CGTGCCCAGCGCAAACAGCCTTCAAGAGGAGGGGTGGGTCTCCCTGTGGA ACACCTACACGAGGCTCTTCCCCGGCACGTTCATCGGATGCAGCCCGCCT GACTCGCAGCCCCCCCCGGACTCCCCGCTGTACGCTTCCTCGCCGCCGAA GCGCCGGAACGCCTCTTCGGCTTCGACTCCCACTCCGACTACGACGACGG CATTGCGAAGAAGGGTATCCTTATCCCCATCTTTGTCCTCCTCCTCCTCC TCCTCCTTCACAGGAATCGGCGCCGTCCACGGCGGCGGTGGCGCTGCCCC TGCCGCGGCGACCGCATACGCGAGCGCCGACCACTGCTTCGACGGAGGGG CGCCGCCGATGCACAGCGGCGGCAACTCCTCGTCCTGGACCGCGATGTCG ACGGCAACAACAGCCGCCGCCGAGACCCCCCGCGGCGGCGCGACGTCGTC GGCCCGGGGCCGCGCGAACACGCTGCCGCCGTCGCCCCTGGTGCTGTCCC ATTCCCCGTTCGACGGCTCGCGCCTGTCGCCGCCGCGGCCGTACGGGAGG ACCCACCGCGACCGGCACAGCAGCCAGGAAGAGGAGGAGGAGGAGGAGGA GAAGCCGCACAAGAGGCACGGTGGGAGAAGCTCGAGGTCCGGGTCGGGGC CCAGGTCGAGGTCGCGGTCGAGGCCGGCAGCGGTGGCGGAAGAGTCCGCG ACACGCGATGGCCGTCCTCCTCCCGCCGGCGACGAAGACCAACATGGAGG TGAAGGCGGCGGCGGCGGTGGCGGTGGCGGCAGGGTTCTCCCGCCCGGGA GCTCCTGGGGGCAGCTCTCCCGACTACCCCTCGAAGAGGTGGGGAAGGCC CTCGGCACGTTCTCGGCCAAGGGGTTCTCCGCCGGCGTTGGGGATAGACG TGGAGGGGGTCGTGTTGAGGGGTGGGTCTCCCTGTGGAACACCTACACGA GGCTCTTCCCCGGCACGTTCATCGGATGCAGCCCGCCTGACTCGCAGCCC CCCCCGGACTCCCCGCTGTACGCTTCCTCGCCGCCGAAGCGCCGGAACGC CTCTTCGGCTTCGACTCCCACTCCGACTACGACGACGGCATTGCGAAGAA GGGTATCCTTATCCCCATCTTTGTCCTCCTCCTCCTCCTCCTCCTTCACA GGAATCGGCGCCGTCCACGGCGGCGGTGGCGCTGCCCCTGCCGCGGCGAC CGCATACGCGAGCGCCGACCACTGCTTCGACGGAGGGGCGCCGCCGATGC ACAGCGGCGGCAACTCCTCGTCCTGGACCGCGATGTCGACGGCAACAACA GCCGCCGCCGAGACCCCCCGCGGCGGCGCGACGTCGTCGGCCCGGGGCCG CGCGAACACGCTGCCGCCGTCGCCCCTGGTGCTGTCCCATTCCCCGTTCG ACGGCTCGCGCCTGTCGCCGCCGCGGCCGTACGGGAGGACCCACCGCGAC CGGCACAGCAGCCAGGAAGAGGAGGAGGAGGAGGAGGAGAAGCCGCACAA GAGGCACGGTGGGAGAAGCTCGAGGTCCGGGTCGGGGCCCAGGTCGAGGT CGCGGTCGAGGCCGGCAGCGGTGGCGGAAGAGTCCGCGACACGCGATGGC CGTCCTCCTCCCGCCGGCGACGAAGACCAACATGGAGGTGAAGGCGGCGG CGGCGGTGGCGGTGGCGGCAGGGTTCTCCCGCCCGGGAGCTCCTGGGGGC AGCTCTCCCGACTACCCCTCGAAGAGGTGGGGAAGGCCCTCGGCACGTTC TCGGCCAAGGGGTTCTCCGCCGGCGTTGGGGATAGACGTGGAGGGGGTCG TGTT back to top
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