mRNA_L-elsbetiae_contig14959.3560.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14959.3560.1
Unique NamemRNA_L-elsbetiae_contig14959.3560.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14959.3560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14959contigL-elsbetiae_contig14959:1107..3130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_005810.1
Exons1
Model size2024
Cds size1059
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14959.3560.1prot_L-elsbetiae_contig14959.3560.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14959 1194..2252 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.2210858-UTR-L-elsbetiae_contig14959:1106..11931622815604.2210858-UTR-L-elsbetiae_contig14959:1106..1193Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14959 1107..1193 +
1691682985.8468282-UTR-L-elsbetiae_contig14959:1106..11931691682985.8468282-UTR-L-elsbetiae_contig14959:1106..1193Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14959 1107..1193 +
1622815604.2470253-UTR-L-elsbetiae_contig14959:2252..31301622815604.2470253-UTR-L-elsbetiae_contig14959:2252..3130Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14959 2253..3130 +
1691682985.8637924-UTR-L-elsbetiae_contig14959:2252..31301691682985.8637924-UTR-L-elsbetiae_contig14959:2252..3130Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14959 2253..3130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.235188-CDS-L-elsbetiae_contig14959:1193..22521622815604.235188-CDS-L-elsbetiae_contig14959:1193..2252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14959 1194..2252 +
1691682985.8556647-CDS-L-elsbetiae_contig14959:1193..22521691682985.8556647-CDS-L-elsbetiae_contig14959:1193..2252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14959 1194..2252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14959.3560.1

>prot_L-elsbetiae_contig14959.3560.1 ID=prot_L-elsbetiae_contig14959.3560.1|Name=mRNA_L-elsbetiae_contig14959.3560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=353bp
MDRLCTLNMSYLFPLALYVCPPLAPRRLQRRSISPNVEKPLVHRVREGLL
TDADVNGNRASCTTSPSPPSGTGKNDGNDNDRVLDSQGEDSGEATSDNGF
RGGGGSVGESGHHQSASDSSSERSSFWDGDDDSEAGRVMAEISSLCQSID
SDSAAEDLPPLPAPRDTCGLLPSSDKQQHPHQYHLPLQQQQQQPYLQRPL
EFDDGGLGLNIPPLAPTAATCPCPGWAQPPSPSPPLGKLFSSHANSGSFL
AAASQVEKCSASTGPPSLPEMESVSCSPTEPLQTAASKADEESAWQGRAL
FEELLFGGMNGPQSFRFHGEEGGGATERMFGFNPLDDDLVFAAGGGQVKL
PQ*
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mRNA from alignment at L-elsbetiae_contig14959:1107..3130+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14959.3560.1 ID=mRNA_L-elsbetiae_contig14959.3560.1|Name=mRNA_L-elsbetiae_contig14959.3560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2024bp|location=Sequence derived from alignment at L-elsbetiae_contig14959:1107..3130+ (Laminarionema elsbetiae ELsaHSoW15)
AAAATTGCCACGTAAAAGGAATTCCGAAACGTACGCACGAGTACAAGACT
ACCATACATAGCAGCGACTGCGGTCTTCATCCCAGCAATGGATCGGTTAT
GCACGCTGAACATGTCTTATCTCTTTCCCCTTGCTTTGTACGTATGTCCC
CCCCTTGCGCCGCGTCGTCTGCAACGCCGTTCCATCTCACCAAACGTTGA
AAAACCTCTTGTACACAGGGTTCGCGAGGGGCTGTTGACGGATGCGGACG
TGAACGGGAACAGGGCCTCTTGTACGACGTCACCTTCTCCGCCCTCGGGC
ACCGGCAAGAACGACGGCAACGACAACGACCGTGTCTTGGACAGCCAGGG
CGAGGACAGCGGCGAAGCTACCTCGGACAACGGCTTCCGCGGCGGCGGCG
GCAGCGTCGGCGAGAGCGGCCACCACCAGTCTGCCAGCGACAGCAGCAGT
GAGCGCAGCAGCTTCTGGGACGGCGACGACGACAGCGAGGCGGGAAGAGT
CATGGCAGAGATCTCGTCCTTGTGCCAAAGCATCGACTCAGACTCGGCGG
CGGAGGATCTGCCGCCCCTGCCCGCGCCGCGAGACACATGTGGCTTGCTG
CCGTCTTCGGACAAACAGCAGCACCCTCACCAGTACCACCTCCCGCTGCA
GCAGCAGCAGCAGCAGCCGTATCTGCAGCGCCCGCTGGAGTTCGACGACG
GCGGGCTTGGGCTCAACATCCCACCCCTAGCCCCGACGGCCGCCACCTGT
CCCTGCCCGGGGTGGGCGCAGCCGCCGTCGCCGTCGCCGCCGCTCGGGAA
GCTCTTCTCCTCCCACGCAAACTCGGGCAGCTTCCTGGCGGCGGCAAGTC
AGGTGGAGAAGTGTTCGGCCTCCACGGGGCCCCCGTCGTTGCCGGAGATG
GAGAGTGTGTCCTGCTCCCCCACGGAGCCGCTCCAGACCGCGGCCTCGAA
GGCTGACGAGGAGAGCGCGTGGCAAGGGCGGGCGCTCTTCGAGGAGCTGC
TGTTCGGCGGCATGAACGGCCCGCAGTCGTTCCGGTTCCATGGCGAGGAG
GGCGGCGGCGCTACCGAGAGGATGTTTGGCTTCAACCCCCTCGACGACGA
CCTGGTGTTTGCCGCTGGCGGCGGCCAGGTGAAGCTGCCGCAGTGACAAG
TGGGTGGTGTGGACTGACTGACTGACACCAAAGCTACTCTAAATGAATGT
AGTTTTTCCCGCGCACTTCTTCACTGTATACATTTTCACCCCACGGCGCT
TGGAAGCGGCTGGTTGGCTTTGTGTGCACTTGGCAAGACTTGGTTGCCGC
ATGAAATTTTTCGGGGGTATTTGGGGTGTACAGTGACTTTCAAGAACATG
GGGACTGGTGTCCTAGGGTGGAGTTTTTTTTTGCGGCGTTGATGCTGGTC
GCTTCGAAACGAGGAGTGCACAACGCGAGGGGGGGGGCGGTCGCCGTTGC
AGGGATTGTTGTGGATGTTTGGCACAGTTTTGGGTAATCGGGAGGGGGAG
CGTCCACACCGCTGCATCTTCAGTGCAACTGTTTGGATCCGACCTGCCTT
TGGCCTTCGCGCGATCGATTGGCAGATCAATCACTTGTCTCTGTGAACTT
GCTGCGCTACACAGCTACATCATTGTAGCAAGCAGTGTGTTTGGAGAACA
GCAGGGTTTTGTATGTATGGGTGAGCGCGGAACGGTACACGTTCCTGTCT
AGGCATGCTGTTTGCACGCGCGCACCACCCGCTTGCCCCCTTGATTTCGC
GTGGATGCGTCCACCCAGCTCCAGGATGTTTTCTGTGGGGTACAAGAAGT
CGCTATCATGAGGGGGGGAACGCAGATTCGCTTTACTCCGGGTTTTAGGG
GGCTCCGGCGGTAGCGATGGGACAGGCGCGTGTGTAGCTGGATGTACAGC
AGCGCTACACGCGACATCACATTACGTAGCATTTTTGTAGTTTTTTATTT
ATTTTTTCCATTTGCGACGATTCCAATTTTGCAACAAATAGACAGGGGCG
ACGTTCGTGGAAGAATGGGACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14959:1107..3130+

>mRNA_L-elsbetiae_contig14959.3560.1 ID=mRNA_L-elsbetiae_contig14959.3560.1|Name=mRNA_L-elsbetiae_contig14959.3560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2118bp|location=Sequence derived from alignment at L-elsbetiae_contig14959:1107..3130+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATCGGTTATGCACGCTGAACATGTCTTATCTCTTTCCCCTTGCTTT
GTACGTATGTCCCCCCCTTGCGCCGCGTCGTCTGCAACGCCGTTCCATCT
CACCAAACGTTGAAAAACCTCTTGTACACAGGGTTCGCGAGGGGCTGTTG
ACGGATGCGGACGTGAACGGGAACAGGGCCTCTTGTACGACGTCACCTTC
TCCGCCCTCGGGCACCGGCAAGAACGACGGCAACGACAACGACCGTGTCT
TGGACAGCCAGGGCGAGGACAGCGGCGAAGCTACCTCGGACAACGGCTTC
CGCGGCGGCGGCGGCAGCGTCGGCGAGAGCGGCCACCACCAGTCTGCCAG
CGACAGCAGCAGTGAGCGCAGCAGCTTCTGGGACGGCGACGACGACAGCG
AGGCGGGAAGAGTCATGGCAGAGATCTCGTCCTTGTGCCAAAGCATCGAC
TCAGACTCGGCGGCGGAGGATCTGCCGCCCCTGCCCGCGCCGCGAGACAC
ATGTGGCTTGCTGCCGTCTTCGGACAAACAGCAGCACCCTCACCAGTACC
ACCTCCCGCTGCAGCAGCAGCAGCAGCAGCCGTATCTGCAGCGCCCGCTG
GAGTTCGACGACGGCGGGCTTGGGCTCAACATCCCACCCCTAGCCCCGAC
GGCCGCCACCTGTCCCTGCCCGGGGTGGGCGCAGCCGCCGTCGCCGTCGC
CGCCGCTCGGGAAGCTCTTCTCCTCCCACGCAAACTCGGGCAGCTTCCTG
GCGGCGGCAAGTCAGGTGGAGAAGTGTTCGGCCTCCACGGGGCCCCCGTC
GTTGCCGGAGATGGAGAGTGTGTCCTGCTCCCCCACGGAGCCGCTCCAGA
CCGCGGCCTCGAAGGCTGACGAGGAGAGCGCGTGGCAAGGGCGGGCGCTC
TTCGAGGAGCTGCTGTTCGGCGGCATGAACGGCCCGCAGTCGTTCCGGTT
CCATGGCGAGGAGGGCGGCGGCGCTACCGAGAGGATGTTTGGCTTCAACC
CCCTCGACGACGACCTGGTGTTTGCCGCTGGCGGCGGCCAGGTGAAGCTG
CCGCAGTGAATGGATCGGTTATGCACGCTGAACATGTCTTATCTCTTTCC
CCTTGCTTTGTACGTATGTCCCCCCCTTGCGCCGCGTCGTCTGCAACGCC
GTTCCATCTCACCAAACGTTGAAAAACCTCTTGTACACAGGGTTCGCGAG
GGGCTGTTGACGGATGCGGACGTGAACGGGAACAGGGCCTCTTGTACGAC
GTCACCTTCTCCGCCCTCGGGCACCGGCAAGAACGACGGCAACGACAACG
ACCGTGTCTTGGACAGCCAGGGCGAGGACAGCGGCGAAGCTACCTCGGAC
AACGGCTTCCGCGGCGGCGGCGGCAGCGTCGGCGAGAGCGGCCACCACCA
GTCTGCCAGCGACAGCAGCAGTGAGCGCAGCAGCTTCTGGGACGGCGACG
ACGACAGCGAGGCGGGAAGAGTCATGGCAGAGATCTCGTCCTTGTGCCAA
AGCATCGACTCAGACTCGGCGGCGGAGGATCTGCCGCCCCTGCCCGCGCC
GCGAGACACATGTGGCTTGCTGCCGTCTTCGGACAAACAGCAGCACCCTC
ACCAGTACCACCTCCCGCTGCAGCAGCAGCAGCAGCAGCCGTATCTGCAG
CGCCCGCTGGAGTTCGACGACGGCGGGCTTGGGCTCAACATCCCACCCCT
AGCCCCGACGGCCGCCACCTGTCCCTGCCCGGGGTGGGCGCAGCCGCCGT
CGCCGTCGCCGCCGCTCGGGAAGCTCTTCTCCTCCCACGCAAACTCGGGC
AGCTTCCTGGCGGCGGCAAGTCAGGTGGAGAAGTGTTCGGCCTCCACGGG
GCCCCCGTCGTTGCCGGAGATGGAGAGTGTGTCCTGCTCCCCCACGGAGC
CGCTCCAGACCGCGGCCTCGAAGGCTGACGAGGAGAGCGCGTGGCAAGGG
CGGGCGCTCTTCGAGGAGCTGCTGTTCGGCGGCATGAACGGCCCGCAGTC
GTTCCGGTTCCATGGCGAGGAGGGCGGCGGCGCTACCGAGAGGATGTTTG
GCTTCAACCCCCTCGACGACGACCTGGTGTTTGCCGCTGGCGGCGGCCAG
GTGAAGCTGCCGCAGTGA
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