mRNA_L-elsbetiae_contig10310.355.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10310.355.1
Unique NamemRNA_L-elsbetiae_contig10310.355.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10310.355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10310contigL-elsbetiae_contig10310:618..2277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10310.355.1prot_L-elsbetiae_contig10310.355.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10310 2077..2277 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815260.1646118-UTR-L-elsbetiae_contig10310:617..7051622815260.1646118-UTR-L-elsbetiae_contig10310:617..705Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10310 618..705 +
1691682802.291339-UTR-L-elsbetiae_contig10310:617..7051691682802.291339-UTR-L-elsbetiae_contig10310:617..705Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10310 618..705 +
1622815260.1828723-UTR-L-elsbetiae_contig10310:2052..20761622815260.1828723-UTR-L-elsbetiae_contig10310:2052..2076Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10310 2053..2076 +
1691682802.299888-UTR-L-elsbetiae_contig10310:2052..20761691682802.299888-UTR-L-elsbetiae_contig10310:2052..2076Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10310 2053..2076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815260.1931534-CDS-L-elsbetiae_contig10310:2076..22771622815260.1931534-CDS-L-elsbetiae_contig10310:2076..2277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10310 2077..2277 +
1691682802.3083534-CDS-L-elsbetiae_contig10310:2076..22771691682802.3083534-CDS-L-elsbetiae_contig10310:2076..2277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10310 2077..2277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10310.355.1

>prot_L-elsbetiae_contig10310.355.1 ID=prot_L-elsbetiae_contig10310.355.1|Name=mRNA_L-elsbetiae_contig10310.355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
MEPPRRPEGDGNANANGDNRRKAHWVNPGYCKYYPGTAPPPPDPSKHTRT
YPEPRMLIDRRAAAAAA
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mRNA from alignment at L-elsbetiae_contig10310:618..2277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10310.355.1 ID=mRNA_L-elsbetiae_contig10310.355.1|Name=mRNA_L-elsbetiae_contig10310.355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1660bp|location=Sequence derived from alignment at L-elsbetiae_contig10310:618..2277+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGGCTTTGGCTTTACTGCGACGGTGTGCAATAGGCTGTGCTTGAGAAC
CTTTACCACTCGGTCTCGTCCAGCCTCCCACACTACAGGTGAGATTTGCG
TATTGAGGGGAAGTCTGGACGGTCCGACGTCCCGAAAGGTTACGTAGACT
ATCGATTGTATCGATATCAGCAACCGTTTCTTGAAGGAGAGAGGAGAGGT
GGCAGGTGGTATAGGAGCGATGGAGAGAGCGGGGTACATTCTGGAGTTTA
AAACGTTCGCTCTCTCTCTTCTCTCTCTCTCTCTCTCTGCCTTTACTTTT
GTGTGGCTTCTTCGTGATGTTCCTGGGTTTCAGATCATAGATACAGCAGT
CCAGCTAGTAGCCCGTGGGTCCCAACCAGAGGGTTCGTGTTAAAATCCAG
GCGCCCTCTGGGAGTGAGGGCCGTGGCTGCCGTGAAAAATATCTGCGGCA
GCGCTTCTCAGCGTTACGGCTACCCGGCATTCAGTGTTTGTATTATTTAT
CCGGGGGTGGAGTGCACGTGAAAGTCGCCAGAGAGAGAGAGCTGTTGGTA
TCTCCACCGCCATTATCTAGTCTAGACTACATGTGTGCGTGCGTTCGCAC
ACAAGCCTGAGATACTGCTGGTATCTTCACCACTGTTTATGTGCGTGGGC
TCGAACAGGGGTGCGATAGTTTTTCACGGCCCAATGTTTTGACACTGCTG
CGGGGGGCAAATTCAGAGTATATGTCAAGATCTCTGCCCGAAACGCCGAA
AATCGGAGTTTCATGATCGGCACCCTGCCCATGTCGATGTAGTCTATGTA
CATTTGTGGCCGCGAAAAGCTACTATCGCATCCCTGTTCAAGCTCGCATA
CTGTTTCGTACTCCATTAACGTAGCCCCGTGAACATTGCCATCCTACATA
CTCCAGATCCTCACGCCCCCAATAGATACCTTTTCCCTCCTGCCAGAATG
CTGATGCACGCCACAACATATTGTATCTAAGTGGATTCGCCAAACCTTAG
CCTTGTCTTTATTGAAGAAGGGGGAAGGATGGGAAGGGGACCGGCGTGCA
TTTGCCGCGTCGTGCAACACCGCGTACGATTGGCAAGTTTCCAGGCGCTG
ACTTGTTTCGTTTTGGCTGTTTCCGAGCAGCCACAAGAACCTCTTGTCCT
CCCGTCCCACGCCTATGCACCACCCAGCGTTTACGAGGCCGCGGCCTCTT
AGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCATCCCCACCGCGCGC
CCCGCCCCCCCCTGCTAGTGCTNNNNNNNNNNTTCCGGCCAGCCACAAGA
CCCCCTTGTCCCCCCCCCCCCCCCCCATGCCCCCCCCCGCGTTTACGAGG
CCGCGGCCTCTTAGCCCCCCCCCCCCCCCCGTTATATTTGTACATTGATT
CAGCGCGAAGCGATCGACTCGTTTTTATTTTGCAGACACGTCGATACAAC
AGTAGCAGTATGGAGCCCCCAAGGAGACCAGAGGGCGATGGTAACGCCAA
CGCTAACGGCGACAACCGCCGCAAGGCGCACTGGGTTAACCCCGGATACT
GCAAGTACTACCCGGGCACAGCGCCGCCTCCGCCGGACCCGTCCAAGCAC
ACCAGGACCTACCCCGAGCCACGCATGCTCATCGATCGGCGCGCGGCAGC
AGCGGCAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10310:618..2277+

>mRNA_L-elsbetiae_contig10310.355.1 ID=mRNA_L-elsbetiae_contig10310.355.1|Name=mRNA_L-elsbetiae_contig10310.355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig10310:618..2277+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCCCCCAAGGAGACCAGAGGGCGATGGTAACGCCAACGCTAACGG
CGACAACCGCCGCAAGGCGCACTGGGTTAACCCCGGATACTGCAAGTACT
ACCCGGGCACAGCGCCGCCTCCGCCGGACCCGTCCAAGCACACCAGGACC
TACCCCGAGCCACGCATGCTCATCGATCGGCGCGCGGCAGCAGCGGCAGC
GATGGAGCCCCCAAGGAGACCAGAGGGCGATGGTAACGCCAACGCTAACG
GCGACAACCGCCGCAAGGCGCACTGGGTTAACCCCGGATACTGCAAGTAC
TACCCGGGCACAGCGCCGCCTCCGCCGGACCCGTCCAAGCACACCAGGAC
CTACCCCGAGCCACGCATGCTCATCGATCGGCGCGCGGCAGCAGCGGCAG
CG
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