mRNA_L-elsbetiae_contig14891.3527.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14891.3527.1
Unique NamemRNA_L-elsbetiae_contig14891.3527.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14891.3527.1 vs. uniprot
Match: D7FJ29_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ29_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 1.310e-80
Identity = 182/192 (94.79%), Postives = 188/192 (97.92%), Query Frame = 3
Query:    3 LKHRPVMNLHEERGFTTSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGNVETGFSAEVSIESWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSELWAGNPAKFVRKLSEEDVAEVEAEAERRSALGELHADEFNPYGQAYVQAEEA 578
            L+HRPVMNLHEERGFT STTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVG+V+TGFSAEV+IESW  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK+ELWAGNPAKFVRKLSEEDVAE+EAEAERRSALGELHADEFNPYGQ YVQAEEA
Sbjct:   16 LRHRPVMNLHEERGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGHVDTGFSAEVAIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEEDVAEIEAEAERRSALGELHADEFNPYGQGYVQAEEA 207          
BLAST of mRNA_L-elsbetiae_contig14891.3527.1 vs. uniprot
Match: A0A7S3GN43_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GN43_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.620e-28
Identity = 87/191 (45.55%), Postives = 115/191 (60.21%), Query Frame = 3
Query:    6 KHRPVMNLHEERGFTTSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGNVETGFSAEVSIESWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSELWAGNPAKFVRKLSEEDVAEVEAEAERRSALGELHADEFNPYGQAYVQAEEA 578
            +HR VMNL+++R    +  FVAP ASVVG+V + D   +WYGAV+RGDKNK+K+G   +V D+AVI+TV N+ TGF A V I                                  XXXXXXXXXXXXXXXXXXXX ++LWAGNPA +VR +++E+   ++  AE  + +G  H +EF P+G  Y  AE A
Sbjct:   38 RHRAVMNLYDKRPIIAAGGFVAPNASVVGDVLLFDEVSIWYGAVLRGDKNKIKVGRLTNVQDRAVISTVANLNTGFPANVEIGDSVTIGHGALITSATIGNRVLVGQGSIIQEGAEXXXXXXXXXXXXXXXXXXXXSNQLWAGNPAVYVRDVTDEESVGIKKSAEHYAEVGRTHGEEFLPFGTTYQAAEAA 228          
BLAST of mRNA_L-elsbetiae_contig14891.3527.1 vs. uniprot
Match: A0A7S3AQF6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AQF6_9EUKA)

HSP 1 Score: 116 bits (290), Expect = 1.980e-26
Identity = 96/190 (50.53%), Postives = 117/190 (61.58%), Query Frame = 3
Query:    6 KHRPVMNLHEERGFTTSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGNVETGFSAEVSIESWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSELWAGNPAKFVRKLSEEDVAEVEAEAERRSALGELHADEFNPYGQAYVQAEE 575
            +HR +MNL ++R       F+AP A++VGNV + D S VWYGAVIRGD++ V IG + ++GD+ VI +     TGFSA   I  +                        XXXXXXXXXXXXXXXXXXXXXXXXXXX  E+W G+PA F+RKLS+E+V E E  AE  SALG  HADEF  Y   Y  AEE
Sbjct:   50 RHRALMNLFDQRPKIGGRVFIAPNATIVGNVDVKDESSVWYGAVIRGDQSNVYIGGYTNIGDRTVIQSAAINPTGFSARTYIGDFVTVGQGCILRACTVDDKSVIGDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEVWGGSPAAFIRKLSKEEVTEHEQGAEATSALGAKHADEFLHYSTTYQLAEE 239          
BLAST of mRNA_L-elsbetiae_contig14891.3527.1 vs. uniprot
Match: W7TW63_9STRA (Trimeric LpxA n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW63_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.080e-25
Identity = 98/190 (51.58%), Postives = 120/190 (63.16%), Query Frame = 3
Query:    6 KHRPVMNLHEERGFTTSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGNVETGFSAEVSIESWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSELWAGNPAKFVRKLSEEDVAEVEAEAERRSALGELHADEFNPYGQAYVQAEE 575
            +HR V NL ++R    S  FV+P A+VVG V + D   +WYGAVIRGD+N VKIG   +V D AVI TV ++++GF A V I +                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ELW GNP KF+RKL +E+V    A AE   AL + H +EF P+G AY+ AE+
Sbjct:   69 RHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEK 258          
BLAST of mRNA_L-elsbetiae_contig14891.3527.1 vs. uniprot
Match: A0A5A8CT95_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CT95_CAFRO)

HSP 1 Score: 112 bits (279), Expect = 4.900e-25
Identity = 82/190 (43.16%), Postives = 108/190 (56.84%), Query Frame = 3
Query:    6 KHRPVMNLHEERGFTTSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGNVETGFSAEVSIESWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSELWAGNPAKFVRKLSEEDVAEVEAEAERRSALGELHADEFNPYGQAYVQAEE 575
            +HRPVMNL ++   T  + FVAP A+VVGNV I   S VWYGAV+RGD+ +V+IG + ++ D+AV+ T   VE   S    I S                              XXXXXXXXXXXXXXX         +LWAGNPA+FVR L++E++A +E +AE  S+L E HA EF P    ++ AE+
Sbjct:   39 RHRPVMNLFDKHPVTDPSVFVAPNATVVGNVTIAHKSNVWYGAVVRGDQARVEIGGYTNIQDRAVVTTAKEVEGQSSGVTKIGSHVTVCPGAVLRSCVVEGHNRIGAGAVVNDGXXXXXXXXXXXXXXXHPGRRIPGGQLWAGNPAEFVRNLTKEEMAALEIDAEAASSLAEEHAAEFLPTSAVHLDAEK 228          
BLAST of mRNA_L-elsbetiae_contig14891.3527.1 vs. uniprot
Match: K3WLJ5_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WLJ5_GLOUD)

HSP 1 Score: 110 bits (276), Expect = 1.500e-24
Identity = 82/190 (43.16%), Postives = 115/190 (60.53%), Query Frame = 3
Query:    6 KHRPVMNLHEERGFTTSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGNVETGFSAEVSIESWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSELWAGNPAKFVRKLSEEDVAEVEAEAERRSALGELHADEFNPYGQAYVQAEE 575
            +HR VMNL+E+R       +VAP A++VG+V I + + VWY  VIRGD N+V+IG   ++ D+ VI+T      G S   SI +                              XXXXXXXXXXXXXXXXXXXXXX  +LWAGNPAK+VR +S+++V+++  +A+   ++ + H+DEF PYG AY+ AE+
Sbjct:   39 RHRQVMNLYEKRPVIAHDVWVAPNATIVGDVEICNDASVWYNVVIRGDLNQVRIGNRTNIQDRTVIHTASTTNAGLSPGASIGNDVTVGHGCILYSCTIENNSLIGMGSIILDGXXXXXXXXXXXXXXXXXXXXXXSGQLWAGNPAKYVRDISDDEVSDIVKQAKEYKSIADTHSDEFLPYGTAYLDAEK 228          
BLAST of mRNA_L-elsbetiae_contig14891.3527.1 vs. uniprot
Match: A0A7S1CBV1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBV1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.560e-24
Identity = 79/186 (42.47%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    6 KHRPVMNLHEERGFTTSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGNVETGFSAEVSIESWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSELWAGNPAKFVRKLSEEDVAEVEAEAERRSALGELHADEFNPYGQAYV 563
            +HRPV NL+E+     +  FVAP A+V+G+V+I+  S VWYGAV+RGD N V+IG +  +GD+AV++T  +VE   +A   I  +                                XXXXXXXXXXXXXX       +LWAGNPA+FVR L++E++A  E +AE  + LG  HA EF P G AY 
Sbjct:   58 RHRPVQNLYEKHPEVENNVFVAPSATVIGHVQILHKSSVWYGAVVRGDVNAVEIGGYSSIGDRAVVSTTKSVEGRPAATCRIGDYVTVGPGALLQSCTIENGVKIGAGAVVMEGALVXXXXXXXXXXXXXXGRRIPSGQLWAGNPAQFVRNLTKEELATFEGDAEFVADLGGEHAHEFLPAGGAYT 243          
BLAST of mRNA_L-elsbetiae_contig14891.3527.1 vs. uniprot
Match: A0A8J5XCB5_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCB5_DIALT)

HSP 1 Score: 110 bits (275), Expect = 1.680e-24
Identity = 80/185 (43.24%), Postives = 106/185 (57.30%), Query Frame = 3
Query:    6 KHRPVMNLHEERGFTTSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGNVETGFSAEVSIESWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSELWAGNPAKFVRKLSEEDVAEVEAEAERRSALGELHADEFNPYGQAY 560
            +HR VMNL+E+R    +  FVAP ASV+G+V + D   VWYGAV+R D N V IG + ++ ++AV++   +  TGF A  SI SW                             XXXXXXXXXXXXXXXXXXX     E+W GNP  FVRKLS+E+ A++E +A   +   + H ++F PYG  Y
Sbjct:   39 RHRAVMNLYEKRPSMAADVFVAPSASVIGDVILNDGVSVWYGAVVRSDVNPVTIGGYTNIQERAVVHAATSTPTGFKANCSIGSWVSVGQGAVLRACTVEDYCVIGAGSVLLEGXXXXXXXXXXXXXXXXXXXRVPSGEMWGGNPIAFVRKLSKEEAADIEKQANAVADAAKEHQEQFLPYGTTY 223          
BLAST of mRNA_L-elsbetiae_contig14891.3527.1 vs. uniprot
Match: A0A7S0JJW9_9EUKA (Hypothetical protein n=2 Tax=Coccolithales TaxID=418917 RepID=A0A7S0JJW9_9EUKA)

HSP 1 Score: 108 bits (270), Expect = 1.570e-23
Identity = 87/190 (45.79%), Postives = 111/190 (58.42%), Query Frame = 3
Query:    6 KHRPVMNLHEERGFTTSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGNVETGFSAEVSIESWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSELWAGNPAKFVRKLSEEDVAEVEAEAERRSALGELHADEFNPYGQAYVQAEE 575
            +HR VMN+ ++R     + FVAP ASV+GNV +   S +WYGAV+RGD++ + IG    +GD+ V+ +     TGFSA   I  W                            XXXXXXXXXXXXXXXXXXXXXXX  E++AGNPA FVRKLS+E++AE E  A+   +L   HADEF  Y  AY   E+
Sbjct:   59 RHRAVMNVFDQRPLLAPSAFVAPNASVIGNVEVKCQSSIWYGAVVRGDQSNIFIGGCSSIGDRTVVQSSTVNPTGFSARTYIGDWVTIGQGCVLRACTVDNFSKVGDGCIIQEXXXXXXXXXXXXXXXXXXXXXXXXXEVYAGNPAVFVRKLSKEEIAEFEVSADAVVSLAAKHADEFLDYSDAYQLREQ 248          
BLAST of mRNA_L-elsbetiae_contig14891.3527.1 vs. uniprot
Match: R1DUX3_EMIHU (Gamma carbonic anhydrase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DUX3_EMIHU)

HSP 1 Score: 107 bits (268), Expect = 1.960e-23
Identity = 88/190 (46.32%), Postives = 117/190 (61.58%), Query Frame = 3
Query:    6 KHRPVMNLHEERGFTTSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGNVETGFSAEVSIESWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSELWAGNPAKFVRKLSEEDVAEVEAEAERRSALGELHADEFNPYGQAYVQAEE 575
            +HR +MNL ++R     + FVAP AS++GNV ++D S +WYGAV+RGD++ V IG    +GD++V+ +     TGF+A+ SI  W                        XXXXXXXXXXXXXXXXXXXXXXXXXXX  E+  GNPA FVRKL ++++A +E +AE  S   + HADEF  Y   Y   E+
Sbjct:   38 RHRALMNLFDQRPKLRPSVFVAPNASLIGNVSVMDESSIWYGAVVRGDQSPVDIGGKSSIGDRSVVLSASVNPTGFAAKTSIGDWVTVGQGCVLRGCTVDNFAVVGDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEVHGGNPAAFVRKLEKDEIAAIEKKAEDVSMSAKKHADEFLAYSNTYQLREQ 227          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14891.3527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ29_ECTSI1.310e-8094.79Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S3GN43_9STRA2.620e-2845.55Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3AQF6_9EUKA1.980e-2650.53Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
W7TW63_9STRA1.080e-2551.58Trimeric LpxA n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A5A8CT95_CAFRO4.900e-2543.16Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
K3WLJ5_GLOUD1.500e-2443.16Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A7S1CBV1_9STRA1.560e-2442.47Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A8J5XCB5_DIALT1.680e-2443.24Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S0JJW9_9EUKA1.570e-2345.79Hypothetical protein n=2 Tax=Coccolithales TaxID=4... [more]
R1DUX3_EMIHU1.960e-2346.32Gamma carbonic anhydrase n=1 Tax=Emiliania huxleyi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14891contigL-elsbetiae_contig14891:1102..3342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.0
Seed ortholog evalue2.8e-62
Seed eggNOG ortholog2880.D7FJ29
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001101,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005773,GO:0005774,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009791,GO:0009853,GO:0009987,GO:0010033,GO:0010228,GO:0016020,GO:0019866,GO:0022414,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033993,GO:0042221,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061458,GO:0070469,GO:0097305,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:1901700,GO:1902494,GO:1990204
EggNOG free text desc.carnitine dehydratase activity
EggNOG OGs2QQV5@2759,COG0663@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptioncarbonic anhydrase
Ec32 orthologEc-07_004610.1
Exons4
Model size1250
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14891.3527.1prot_L-elsbetiae_contig14891.3527.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14891 1122..2673 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815601.1050053-UTR-L-elsbetiae_contig14891:1101..11211622815601.1050053-UTR-L-elsbetiae_contig14891:1101..1121Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14891 1102..1121 +
1691682983.9782631-UTR-L-elsbetiae_contig14891:1101..11211691682983.9782631-UTR-L-elsbetiae_contig14891:1101..1121Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14891 1102..1121 +
1622815601.1755354-UTR-L-elsbetiae_contig14891:2673..33421622815601.1755354-UTR-L-elsbetiae_contig14891:2673..3342Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14891 2674..3342 +
1691682984.022243-UTR-L-elsbetiae_contig14891:2673..33421691682984.022243-UTR-L-elsbetiae_contig14891:2673..3342Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14891 2674..3342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815601.1184666-CDS-L-elsbetiae_contig14891:1121..12451622815601.1184666-CDS-L-elsbetiae_contig14891:1121..1245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14891 1122..1245 +
1691682983.989369-CDS-L-elsbetiae_contig14891:1121..12451691682983.989369-CDS-L-elsbetiae_contig14891:1121..1245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14891 1122..1245 +
1622815601.1298668-CDS-L-elsbetiae_contig14891:1781..19471622815601.1298668-CDS-L-elsbetiae_contig14891:1781..1947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14891 1782..1947 +
1691682983.9992938-CDS-L-elsbetiae_contig14891:1781..19471691682983.9992938-CDS-L-elsbetiae_contig14891:1781..1947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14891 1782..1947 +
1622815601.142282-CDS-L-elsbetiae_contig14891:2136..22711622815601.142282-CDS-L-elsbetiae_contig14891:2136..2271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14891 2137..2271 +
1691682984.0069053-CDS-L-elsbetiae_contig14891:2136..22711691682984.0069053-CDS-L-elsbetiae_contig14891:2136..2271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14891 2137..2271 +
1622815601.1560578-CDS-L-elsbetiae_contig14891:2537..26731622815601.1560578-CDS-L-elsbetiae_contig14891:2537..2673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14891 2538..2673 +
1691682984.0145617-CDS-L-elsbetiae_contig14891:2537..26731691682984.0145617-CDS-L-elsbetiae_contig14891:2537..2673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14891 2538..2673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14891.3527.1

>prot_L-elsbetiae_contig14891.3527.1 ID=prot_L-elsbetiae_contig14891.3527.1|Name=mRNA_L-elsbetiae_contig14891.3527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
MNLHEERGFTTSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIG
AHVHVGDKAVINTVGNVETGFSAEVSIESWVVIEPGAVLTSCMIGNRCKI
GAGAVVAEGSVMDEGAQIASGTVVPPGCLVPKSELWAGNPAKFVRKLSEE
DVAEVEAEAERRSALGELHADEFNPYGQAYVQAEEA*
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mRNA from alignment at L-elsbetiae_contig14891:1102..3342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14891.3527.1 ID=mRNA_L-elsbetiae_contig14891.3527.1|Name=mRNA_L-elsbetiae_contig14891.3527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2241bp|location=Sequence derived from alignment at L-elsbetiae_contig14891:1102..3342+ (Laminarionema elsbetiae ELsaHSoW15)
ACTTGAAGCACCGCCCGGTGATGAATCTGCACGAGGAGCGTGGCTTCACC ACGTCTACCACCTTCGTTGCGCCGTGCGCGTCTGTTGTGGGGAACGTCAG GATCATCGACCACTCTTGCGTGTGGTACGGGGCCGTCATCCGAGGTGGGA TACTAACCTATACCATAGATAGTTTGCATTTCATGCGACAACGGAAAGCA GAATGGACGTATGTTCATTATGTAGTGAGAAGGGATGCGTGTTTGAACGA TGTGTAGAGAAAGAGTCGCACGCACGCACAGAGCCCGAGACCGAGATAGA AAAGACCTGTGTTTTTGTTATTTTTTCGGTTTATCTGCAGAGTGCTTGGC ACAACCTCTTGTACGCGGAAATATCGATCCGTGAATTTCTATCATGTAGC TTCACTTCCTTTGTTGTTCGACGCGCAAAGATGTGTATTTGCTGTATGCC CCAGTTGTTACTAAATAATAGTATAGTACCATATTTTGATGCGACCACCC CACTGAAGGTACACTCCCGCGTTGTTTCTTTTTAACTGGTGCCCTTGTTC GTCGGCGGGTACCCAGGTAGCGTTCACTGCATCACTACCTTTGTCGCGGG AAGGCAATGCAGTTGTTGTCCGTTTGTGCGGGCGGTATGGCTCACTTTTC CTTCTGTTTCGCTTTTATCGTGGCCGGCAGGTGACAAGAACAAGGTGAAG ATCGGCGCTCACGTCCACGTTGGTGACAAGGCGGTAATCAACACCGTGGG AAATGTTGAGACCGGCTTCTCCGCAGAGGTTTCGATCGAGTCGTGGGTCG TTATCGAGCCTGGAGCAGTGCTCACGTCTTGCATGATTGGCAACAGGTAA ACTTGATGTTTCATGCAATACCATGTGTAATTGGTTCTGTTTCCTTGATG AAAAGTTTACACCCACCAAACCGTAAACATCTTGCAAACGATGCCAGGTG CGCGCACATATCAAGCTCAAAAATCAAGTAGATGCAGAAACGATCAAAAT CAAGCCGTTGTGTCTATCTCGTGTCATCATCCCAGGTGCAAAATCGGGGC CGGTGCCGTGGTCGCCGAGGGCTCGGTAATGGACGAGGGAGCACAGATTG CCTCGGGAACGGTGGTGCCCCCCGGATGCCTTGTACCGAAGAGTGAGCTG TGGGCAGGCAACCCCGCAAAGTGAGAATCCAGACAGAACAGGCAGCGAGG CACAGTTAGCACGCGGGGCGGGCGGTTTCAAAGCAGGAGCATCGGAGAGA ATAGAGAAACACTCTGCTGTCCTCACGAACTTTTATCGCCTCCTGCTCGC CTCAGCGCCCCTTTCCCCGCTGCACTCTGCTCCAAACACTTGGCTTGTTG GAGAGTTAGCTCGTCCTCTCATTCTGCTGCTGCCTTCTGTTTTGACCTAA CACCCGTGCCATCTCTGTGATTTTCCCTATTCCTAGGTTTGTGCGCAAGC TCAGCGAGGAAGACGTAGCGGAGGTGGAGGCAGAGGCCGAACGAAGGAGC GCGCTAGGAGAGTTGCACGCAGACGAGTTCAACCCGTACGGCCAGGCGTA CGTTCAAGCAGAAGAGGCGTAGTTGGTCATGAGGTCCTTTGATTGAAACG CCGCAGGATTTGTGGCAACAGAGGTGGCTGTTTCGGAAAATATTGCCCTT CAATGGTGAGGTGGTAGCAGCCTGTTTCCCCTGCTTATTAAAGTGCAGCC TTTCTGTTTCATCAGGAAAAGGGCAAAGGGATGGATGACCAAGTCTAGAC TAGATGTACTGCCGTGTCGATTTTCTTGGCGGGGAAGAAACACCATACCT ACTGGTATTTTGCAGAGATGGAGCTATGTATGCCGCAACAGCAGAGTGGA GGGGCCGGCGATTGGTACAGCGCTGGGAGTTAATTCGTTCCTGTGATCTC GGATCCGAGGACAGCAGAGTAGTAGATGGCAACGGGCACGAAATATATAA ACCGCATCATGTGGCCATCTACAATTTTTAGTAGTTTTACTTCTGCAGTT CAGCAGTACTAATTTATATTTTGTCCGGGGGGTGGGTACGTGCTCACCCA AGCCGGCGTTGCTGCTCCACTTGCCGGACGCAGGCATGAATCAGTCGAAT TTTTCTGTGCGTCCAAATTTTTGCCATGTGAAAGTTTCAGTTTCGTCCGC CGCACACCTTTCCGGCAACGCCAAAACGATTGCGATGTGGAGGGCGTTTT TCACGACACAGAGAAATGCTCGATTCGCGGTTCAGGACCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14891:1102..3342+

>mRNA_L-elsbetiae_contig14891.3527.1 ID=mRNA_L-elsbetiae_contig14891.3527.1|Name=mRNA_L-elsbetiae_contig14891.3527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig14891:1102..3342+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCTGCACGAGGAGCGTGGCTTCACCACGTCTACCACCTTCGTTGC
GCCGTGCGCGTCTGTTGTGGGGAACGTCAGGATCATCGACCACTCTTGCG
TGTGGTACGGGGCCGTCATCCGAGATGAATCTGCACGAGGAGCGTGGCTT
CACCACGTCTACCACCTTCGTTGCGCCGTGCGCGTCTGTTGTGGGGAACG
TCAGGATCATCGACCACTCTTGCGTGTGGTACGGGGCCGTCATCCGAGGT
GACAAGAACAAGGTGAAGATCGGCGCTCACGTCCACGTTGGTGACAAGGC
GGTAATCAACACCGTGGGAAATGTTGAGACCGGCTTCTCCGCAGAGGTTT
CGATCGAGTCGTGGGTCGTTATCGAGCCTGGAGCAGTGCTCACGTCTTGC
ATGATTGGCAACAGGTGACAAGAACAAGGTGAAGATCGGCGCTCACGTCC
ACGTTGGTGACAAGGCGGTAATCAACACCGTGGGAAATGTTGAGACCGGC
TTCTCCGCAGAGGTTTCGATCGAGTCGTGGGTCGTTATCGAGCCTGGAGC
AGTGCTCACGTCTTGCATGATTGGCAACAGGTGCAAAATCGGGGCCGGTG
CCGTGGTCGCCGAGGGCTCGGTAATGGACGAGGGAGCACAGATTGCCTCG
GGAACGGTGGTGCCCCCCGGATGCCTTGTACCGAAGAGTGAGCTGTGGGC
AGGCAACCCCGCAAAGTGCAAAATCGGGGCCGGTGCCGTGGTCGCCGAGG
GCTCGGTAATGGACGAGGGAGCACAGATTGCCTCGGGAACGGTGGTGCCC
CCCGGATGCCTTGTACCGAAGAGTGAGCTGTGGGCAGGCAACCCCGCAAA
GTTTGTGCGCAAGCTCAGCGAGGAAGACGTAGCGGAGGTGGAGGCAGAGG
CCGAACGAAGGAGCGCGCTAGGAGAGTTGCACGCAGACGAGTTCAACCCG
TACGGCCAGGCGTACGTTCAAGCAGAAGAGGCGTAGGTTTGTGCGCAAGC
TCAGCGAGGAAGACGTAGCGGAGGTGGAGGCAGAGGCCGAACGAAGGAGC
GCGCTAGGAGAGTTGCACGCAGACGAGTTCAACCCGTACGGCCAGGCGTA
CGTTCAAGCAGAAGAGGCGTAG
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