mRNA_L-elsbetiae_contig10304.351.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10304.351.1
Unique NamemRNA_L-elsbetiae_contig10304.351.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10304.351.1 vs. uniprot
Match: A0A6H5KLB1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLB1_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.730e-33
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 1 
Query:    4 PRPRVQLKAHVSSGDLVFSSGEGIMCVFSMTTVDACAFGSPLEVETNGMLRASFGEDEKLDELEMMFDGVAVHQQLQRAMG 246
            PRPRV LK+ VS+GD+VFSS  GIMCVFSMTTVDAC FGSPLEVE NGMLRA+F E  KLDELE+MFDG+AVHQQLQ+AMG
Sbjct:  214 PRPRVHLKSCVSNGDMVFSSDRGIMCVFSMTTVDACDFGSPLEVEKNGMLRATFVEGGKLDELEIMFDGIAVHQQLQKAMG 294
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BLAST of mRNA_L-elsbetiae_contig10304.351.1 vs. uniprot
Match: A0A6H5K0R4_9PHAE (PAS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0R4_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.400e-6
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   55 FSSGEGIMCVFSMTTVDACAFGSPLEVETNGMLRASFGED-EKLDELEMMFDGVAVHQQLQRAMG 246
            F S +G+MC F+M T+DA    +  E E NGM+R  F  D  K++EL+M FD ++ +QQL  A G
Sbjct:  248 FFSRDGLMCSFTMRTLDAVKHAARREWEVNGMVRVRFNSDTNKIEELDMTFDAISCYQQLMLASG 312
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10304.351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLB1_9PHAE1.730e-3380.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K0R4_9PHAE4.400e-644.62PAS domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10304contigL-elsbetiae_contig10304:2195..4865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size786
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10304.351.1prot_L-elsbetiae_contig10304.351.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10304 2723..4790 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815259.8889456-UTR-L-elsbetiae_contig10304:2194..27221622815259.8889456-UTR-L-elsbetiae_contig10304:2194..2722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10304 2195..2722 -
1691682802.1076975-UTR-L-elsbetiae_contig10304:2194..27221691682802.1076975-UTR-L-elsbetiae_contig10304:2194..2722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10304 2195..2722 -
1622815259.9371161-UTR-L-elsbetiae_contig10304:4790..48651622815259.9371161-UTR-L-elsbetiae_contig10304:4790..4865Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10304 4791..4865 -
1691682802.1455662-UTR-L-elsbetiae_contig10304:4790..48651691682802.1455662-UTR-L-elsbetiae_contig10304:4790..4865Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10304 4791..4865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815259.8984702-CDS-L-elsbetiae_contig10304:2722..27331622815259.8984702-CDS-L-elsbetiae_contig10304:2722..2733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10304 2723..2733 -
1691682802.1165893-CDS-L-elsbetiae_contig10304:2722..27331691682802.1165893-CDS-L-elsbetiae_contig10304:2722..2733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10304 2723..2733 -
1622815259.9081612-CDS-L-elsbetiae_contig10304:3743..38801622815259.9081612-CDS-L-elsbetiae_contig10304:3743..3880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10304 3744..3880 -
1691682802.126503-CDS-L-elsbetiae_contig10304:3743..38801691682802.126503-CDS-L-elsbetiae_contig10304:3743..3880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10304 3744..3880 -
1622815259.9200983-CDS-L-elsbetiae_contig10304:4755..47901622815259.9200983-CDS-L-elsbetiae_contig10304:4755..4790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10304 4756..4790 -
1691682802.137447-CDS-L-elsbetiae_contig10304:4755..47901691682802.137447-CDS-L-elsbetiae_contig10304:4755..4790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10304 4756..4790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10304.351.1

>prot_L-elsbetiae_contig10304.351.1 ID=prot_L-elsbetiae_contig10304.351.1|Name=mRNA_L-elsbetiae_contig10304.351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MCVFSMTTVDACAFGSPLEVETNGMLRASFGEDEKLDELEMMFDGVAVHQ
QLQRAMGVPY*
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mRNA from alignment at L-elsbetiae_contig10304:2195..4865-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10304.351.1 ID=mRNA_L-elsbetiae_contig10304.351.1|Name=mRNA_L-elsbetiae_contig10304.351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2671bp|location=Sequence derived from alignment at L-elsbetiae_contig10304:2195..4865- (Laminarionema elsbetiae ELsaHSoW15)
CAGCCCCGCCCTCGGGTGCAGCTCAAGGCGCACGTGAGTAGCGGAGACCT
GGTGTTTTCGTCCGGCGAGGGCATCATGTGCGTCTTCAGCATGACCACGG
TGGATGCTTGGTGAGTGGAGAGAGAGATAGGGGAGGAAAGGGAGGGGGGG
GGAGGGGGCAAGAGGGCATGCGCAGTGCACGAGGAGATACAAGCATGGTC
TTCACACTCGCGCTGCGCTGCGCTAGAGGAGGAGTGCTAGTGCTTGGCAT
GCGCTTGTGCCGCCGATGGGTGGGCATGAGCGAGCCAAAACTGGAGCATG
TGTGTGTGGAAACGGTTCACCCTATGTGCGACTGACTGGCTGATGCTTGC
ACTGCTGTGACGTAGTGCCGTGTGGTGTGTCTATGTACCAGGCCTGAGAA
TCTCACAGAGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTGCT
TCTGGGGGCGGTTTTCTCGTTTCTTTCGTCTCCCAAGCGGCGGGTTGCAC
CCCGTGTTTTTTTNNNNNNNNNNGGGGGGGGGGGGGGAGTGAGGAAAGGG
GGGGGGGGGTGTGGGTGCTCTTTTCCTGCCCGGGGTGTGTCTGTGGGTTT
TTTTTTTTTTTTTTTTTTTTCGGTTTTGAGCGCGCTGCTGGCGGCGGTTG
TCGCGATCCTCTCGTCTCCCAAGCGGCGTGTTGCACGCCGTGTGTTTTCA
CGCCGTCCCTCGCGCGGGCAAGGGGCGAGAGAGGAACGGTTCCAGACGAC
CAAGAAGCCACCACTACTACTGTTTGAAATATTACCACGACGCCAAGTAA
ACCATGCCCTGAACACGAGTAGCAGGAAAGCGGTCCGCCGCTCCGGCTCG
AGAGCGGCCCCGTGGATGCGTGGTCAATGGTCGATGCAAGGCAGGCAAGC
CGATCAAAGCGTGAGTGTCAGTCCAGTCAACCCCCTCACCTCTTCCGCCT
CCCCGCTCTCGCCTTGACCCCCCCCTGCTCGTTAGCGCCTTCGGATCGCC
CCTGGAGGTGGAAACGAACGGCATGCTCCGTGCCTCGTTCGGGGAGGATG
AGAAGCTGGACGAGCTGGAGATGATGTTTGACGGTGTTGCCGTGCACCAG
CAGCTGCAGAGGGCGATGGGAGGTGGGTGATAAAAAAAGGGAGCACGAGC
GTGCGTGTGCGCGGCACCTGCGTACGTGCATATTTCTATTTAAGCAGGGA
GAGAGAAGGCGGGGGGGGGGGGGGGGGGGGGGTGTGGGGGTGCGGCGGGG
GGTGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGCGTTTGGGGTCAAGCGCCGGGCCTCGGTGGCACGAGGGGGGGC
CGTAGTGTTTTTCCGTGCCCCCTCAACCCGGCGCTTGACCCCGAACGATC
CCCCTTTGACGAGGCCTCTTTCCCGACCATTCGGCGACAGAATCGATCTT
CCATTCTAGATTATGCGTTTACTTGTCTGTGAGCAGCGATAGGCTCTATT
GATCTCTCCGGTTCACATATTGTAGGAGTATGTACATGTTTTGGCTGCTT
CGCCTCTACAAGCAGTTATTCTTGGGCTGTTTTAATTTGGTGATGCTCTC
GTGTTCGTGTTTGTGTCCTGGAAGTGTTTCCCCCCCCTGCTGGATTTTAA
CGTTGGTTGTTTGCGTTGGTCAGCAGGCCCAGCTGGCCAGCCCGCTCCGC
GCGGGGCCCCCGTAACCAGAACAACGGGTTTTTTCAAATGAACAATGAAT
CAAAGATGGAACCTACCCCACACTAGAGCAAGGACTCGATATGGGGTTCA
AACGGTATTCCATAGAGTGACGTAACATTTGGCGAAGCGAGCAGAAAAAC
AAACCTAAAATATCAGAAGAGTTCAAAACATTAAGGGGGTTTTTGTCCGA
GGGGCAGGAACGCCAGCTGACCGCGCGTGTGTGTCGTATGTACGTGCATA
CAAATCGGAACGACTTTTTTTATTGATTTGCAGCAGCAGCCAGTAACGAC
AACGACGTTCAATTAACCACCCCCCCCCCCCCCTCCTCGTTGCACATGAA
GTATAGCCACGGAATCCCCTGTCTTTGACGCTATATAATCCCTCTCAAAT
AAACAATCGCGCGCGCGCGCGTTGTGCGGCAGTGCCTTACTGACGCGGGG
TAGGTAGGCCCGCGTTCTCCCAAAGGCGGCAGGGTGGCCAGCCCCGCACG
TCGATATGTACGACGACGCCAGATGGTAAACGGCCGGGGCGAGAAGGAGC
GTTTAAACCAGAGAGCGAGCAAAAAAGCGGGGAGAGATGGGGCAACGGGC
GTGCCCCGGCGGGGTGGAACGGCTATAGGTTGTCCCTGTCTGCTAACCCC
CGGGTTAACCTGGAGGTAGGTAGATCTATATACCTCGCGGCAGTTGGAGG
GAGTCTTTTTTTTTGGTGCGGTGCGGGGCGAGAGCGGTGCGTTGCCTGCC
TTTTTTTTCCGTGCGAGAGGAAACGCGAAAAGGGACGGGAAGAGAGGGAA
AGGGGCTGCGGAGTTGAGAAAAAAATGTGCGTGATGATGACGGCATGATT
ATCTCTCGAAATGGGTGCTGCGGTAACGGGTTTTGACTCTCGGCGAGACA
CATGGCATGACGGATCCCTTACCTAGAAGCGGTGTGCCTATGTTGCCGAG
AGGCCTTTCGTCACGAAAACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10304:2195..4865-

>mRNA_L-elsbetiae_contig10304.351.1 ID=mRNA_L-elsbetiae_contig10304.351.1|Name=mRNA_L-elsbetiae_contig10304.351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig10304:2195..4865- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGTCTTCAGCATGACCACGGTGGATGCTTGATGTGCGTCTTCAGC
ATGACCACGGTGGATGCTTGCGCCTTCGGATCGCCCCTGGAGGTGGAAAC
GAACGGCATGCTCCGTGCCTCGTTCGGGGAGGATGAGAAGCTGGACGAGC
TGGAGATGATGTTTGACGGTGTTGCCGTGCACCAGCAGCTGCAGAGGGCG
ATGGGAGCGCCTTCGGATCGCCCCTGGAGGTGGAAACGAACGGCATGCTC
CGTGCCTCGTTCGGGGAGGATGAGAAGCTGGACGAGCTGGAGATGATGTT
TGACGGTGTTGCCGTGCACCAGCAGCTGCAGAGGGCGATGGGAGTGCCTT
ACTGATGCCTTACTGA
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