mRNA_L-elsbetiae_contig14866.3514.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14866.3514.1
Unique NamemRNA_L-elsbetiae_contig14866.3514.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14866.3514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14866contigL-elsbetiae_contig14866:611..922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size314
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.9388142-UTR-L-elsbetiae_contig14866:610..6131622815599.9388142-UTR-L-elsbetiae_contig14866:610..613Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14866 611..613 +
1691682983.2505686-UTR-L-elsbetiae_contig14866:610..6131691682983.2505686-UTR-L-elsbetiae_contig14866:610..613Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14866 611..613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.950849-CDS-L-elsbetiae_contig14866:613..9221622815599.950849-CDS-L-elsbetiae_contig14866:613..922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14866 614..922 +
1691682983.2689753-CDS-L-elsbetiae_contig14866:613..9221691682983.2689753-CDS-L-elsbetiae_contig14866:613..922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14866 614..922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14866.3514.1prot_L-elsbetiae_contig14866.3514.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14866 614..922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14866.3514.1

>prot_L-elsbetiae_contig14866.3514.1 ID=prot_L-elsbetiae_contig14866.3514.1|Name=mRNA_L-elsbetiae_contig14866.3514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MCVVSWWISTLCSCKNRAAVCLPTGSLYLPYLVCVMLRVAALQKLHPRRL
ATSTVTHVNYTVSKFRFGPLSASWDIRFSVRGCTEGLMFRCPRISRLKRS
TRC
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mRNA from alignment at L-elsbetiae_contig14866:611..922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14866.3514.1 ID=mRNA_L-elsbetiae_contig14866.3514.1|Name=mRNA_L-elsbetiae_contig14866.3514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig14866:611..922+ (Laminarionema elsbetiae ELsaHSoW15)
CCGATGTGTGTAGTTTCCTGGTGGATCTCGACGCTTTGTTCATGCAAAAA
TCGTGCTGCAGTCTGTCTCCCAACTGGCTCTCTATATCTCCCCTATCTAG
TTTGTGTAATGCTGAGAGTTGCTGCCCTGCAAAAACTACACCCCAGACGT
TTGGCCACCTCTACAGTCACACATGTTAACTACACAGTCTCAAAGTTTCG
TTTTGGACCACTCTCTGCAAGCTGGGATATCCGCTTCTCCGTGCGTGGGT
GTACTGAGGGCCTAATGTTTCGCTGTCCCAGGATATCCCGCCTCAAAAGA
TCCACACGGTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14866:611..922+

>mRNA_L-elsbetiae_contig14866.3514.1 ID=mRNA_L-elsbetiae_contig14866.3514.1|Name=mRNA_L-elsbetiae_contig14866.3514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig14866:611..922+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGTAGTTTCCTGGTGGATCTCGACGCTTTGTTCATGCAAAAATCG
TGCTGCAGTCTGTCTCCCAACTGGCTCTCTATATCTCCCCTATCTAGTTT
GTGTAATGCTGAGAGTTGCTGCCCTGCAAAAACTACACCCCAGACGTTTG
GCCACCTCTACAGTCACACATGTTAACTACACAGTCTCAAAGTTTCGTTT
TGGACCACTCTCTGCAAGCTGGGATATCCGCTTCTCCGTGCGTGGGTGTA
CTGAGGGCCTAATGTTTCGCTGTCCCAGGATATCCCGCCTCAAAAGATCC
ACACGGTGTATGTGTGTAGTTTCCTGGTGGATCTCGACGCTTTGTTCATG
CAAAAATCGTGCTGCAGTCTGTCTCCCAACTGGCTCTCTATATCTCCCCT
ATCTAGTTTGTGTAATGCTGAGAGTTGCTGCCCTGCAAAAACTACACCCC
AGACGTTTGGCCACCTCTACAGTCACACATGTTAACTACACAGTCTCAAA
GTTTCGTTTTGGACCACTCTCTGCAAGCTGGGATATCCGCTTCTCCGTGC
GTGGGTGTACTGAGGGCCTAATGTTTCGCTGTCCCAGGATATCCCGCCTC
AAAAGATCCACACGGTGT
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