mRNA_L-elsbetiae_contig14854.3508.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14854.3508.1
Unique NamemRNA_L-elsbetiae_contig14854.3508.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14854.3508.1 vs. uniprot
Match: D8LHK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHK1_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.790e-17
Identity = 53/82 (64.63%), Postives = 57/82 (69.51%), Query Frame = -1 
Query:   55 RSGEDLLNFGNDSGAAGARRKQAPEPPXRPAGTSNGGGRSPVPAGWGNRPVGXXXXXXSR----TNGGPSSPGRKSTSGRMQ 288
            RSGEDLLNFGNDSGA   R  QAPEPP  P  T+NGG RSPVPAGWGNRP        +     +NGG S PGRKST+GRMQ
Sbjct:   44 RSGEDLLNFGNDSGAY--RPNQAPEPPP-PRPTTNGG-RSPVPAGWGNRPAAAGGSAVAGCAGISNGGASLPGRKSTAGRMQ 121
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BLAST of mRNA_L-elsbetiae_contig14854.3508.1 vs. uniprot
Match: A0A6H5JQN3_9PHAE (J domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.910e-17
Identity = 54/84 (64.29%), Postives = 58/84 (69.05%), Query Frame = -1 
Query:   52 GRSGEDLLNFGNDSGAAGARRKQAPEPPXRPAGTSNGGGRSPVPAGWGNRPVGXXXXXXS----RTNGGPSSPGRKSTSGRMQG 291
            GRSGEDLLNFGNDSG    R KQ PEPP RP  T+NGG RSPVPAGWGNRP        +     +NGG S  GRKST+GRMQG
Sbjct:  155 GRSGEDLLNFGNDSGVR--RPKQVPEPPPRP--TTNGG-RSPVPAGWGNRPAAARGSPVAGGAGSSNGGASPQGRKSTAGRMQG 233
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BLAST of mRNA_L-elsbetiae_contig14854.3508.1 vs. uniprot
Match: D8LHK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHK2_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.050e-13
Identity = 49/77 (63.64%), Postives = 52/77 (67.53%), Query Frame = -1 
Query:   73 GRSGEDLLNFGNDSGAAGARRKQAPEPPXRPAGTSNGGGRSPVPAGWGNRPVGXXXXXXS----RTNGGPSSPGRKS 291
            GRSGEDLLNFGNDSG  G R KQAPEP  RP  T+NGG RSPVPAGWGNRP        +     +NGG S  GRKS
Sbjct:  281 GRSGEDLLNFGNDSG--GGRPKQAPEPSPRP--TTNGG-RSPVPAGWGNRPAAARGSPVAGGAGSSNGGASPQGRKS 352
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14854.3508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHK1_ECTSI1.790e-1764.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQN3_9PHAE4.910e-1764.29J domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
D8LHK2_ECTSI3.050e-1363.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14854contigL-elsbetiae_contig14854:2051..2353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size304
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.6035051-CDS-L-elsbetiae_contig14854:2050..23531622815599.6035051-CDS-L-elsbetiae_contig14854:2050..2353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14854 2051..2353 +
1691682983.1238701-CDS-L-elsbetiae_contig14854:2050..23531691682983.1238701-CDS-L-elsbetiae_contig14854:2050..2353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14854 2051..2353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14854.3508.1prot_L-elsbetiae_contig14854.3508.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14854 2051..2353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14854.3508.1

>prot_L-elsbetiae_contig14854.3508.1 ID=prot_L-elsbetiae_contig14854.3508.1|Name=mRNA_L-elsbetiae_contig14854.3508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
PVTPRATVRAPHAAIRPPLHPSRRRLSARRRRTAVGAAAAAAAAADGSVA
PARRHGAAAAAVAGAGWSRRRFRRLFPAGTGGAGVVPEVEKVFPRPPPGA
R
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mRNA from alignment at L-elsbetiae_contig14854:2051..2353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14854.3508.1 ID=mRNA_L-elsbetiae_contig14854.3508.1|Name=mRNA_L-elsbetiae_contig14854.3508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=303bp|location=Sequence derived from alignment at L-elsbetiae_contig14854:2051..2353+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGTTACTCCTCGAGCCACCGTTCGCGCCCCCCACGCCGCCATCCGGCC
GCCCCTGCATCCGTCCCGACGTCGACTTTCTGCCCGGCGACGACGGACCG
CCGTTGGTGCGGCTGCCGCCGCCGCCGCCGCCGCCGACGGGTCGGTTGCC
CCAGCCCGCCGGCACGGGGCTGCGGCCGCCGCCGTTGCTGGTGCCGGCTG
GTCGCGGCGGCGGTTCCGGCGCCTGTTTCCGGCGGGCACCGGCGGCGCCG
GAGTCGTTCCCGAAGTTGAGAAGGTCTTCCCCCGACCGCCCCCCGGCGCC
AGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14854:2051..2353+

>mRNA_L-elsbetiae_contig14854.3508.1 ID=mRNA_L-elsbetiae_contig14854.3508.1|Name=mRNA_L-elsbetiae_contig14854.3508.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig14854:2051..2353+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGTTACTCCTCGAGCCACCGTTCGCGCCCCCCACGCCGCCATCCGGCC
GCCCCTGCATCCGTCCCGACGTCGACTTTCTGCCCGGCGACGACGGACCG
CCGTTGGTGCGGCTGCCGCCGCCGCCGCCGCCGCCGACGGGTCGGTTGCC
CCAGCCCGCCGGCACGGGGCTGCGGCCGCCGCCGTTGCTGGTGCCGGCTG
GTCGCGGCGGCGGTTCCGGCGCCTGTTTCCGGCGGGCACCGGCGGCGCCG
GAGTCGTTCCCGAAGTTGAGAAGGTCTTCCCCCGACCGCCCCCCGGCGCC
AGGCCCGTTACTCCTCGAGCCACCGTTCGCGCCCCCCACGCCGCCATCCG
GCCGCCCCTGCATCCGTCCCGACGTCGACTTTCTGCCCGGCGACGACGGA
CCGCCGTTGGTGCGGCTGCCGCCGCCGCCGCCGCCGCCGACGGGTCGGTT
GCCCCAGCCCGCCGGCACGGGGCTGCGGCCGCCGCCGTTGCTGGTGCCGG
CTGGTCGCGGCGGCGGTTCCGGCGCCTGTTTCCGGCGGGCACCGGCGGCG
CCGGAGTCGTTCCCGAAGTTGAGAAGGTCTTCCCCCGACCGCCCCCCGGC
GCCAGG
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