mRNA_L-elsbetiae_contig14852.3507.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14852.3507.1
Unique NamemRNA_L-elsbetiae_contig14852.3507.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14852.3507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14852contigL-elsbetiae_contig14852:2033..4410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size599
Cds size597
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14852.3507.1prot_L-elsbetiae_contig14852.3507.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14852 2033..4410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.4013944-CDS-L-elsbetiae_contig14852:2032..22231622815599.4013944-CDS-L-elsbetiae_contig14852:2032..2223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14852 2033..2223 -
1691682983.0825274-CDS-L-elsbetiae_contig14852:2032..22231691682983.0825274-CDS-L-elsbetiae_contig14852:2032..2223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14852 2033..2223 -
1622815599.452135-CDS-L-elsbetiae_contig14852:2581..27351622815599.452135-CDS-L-elsbetiae_contig14852:2581..2735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14852 2582..2735 -
1691682983.0917628-CDS-L-elsbetiae_contig14852:2581..27351691682983.0917628-CDS-L-elsbetiae_contig14852:2581..2735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14852 2582..2735 -
1622815599.4648943-CDS-L-elsbetiae_contig14852:3848..39951622815599.4648943-CDS-L-elsbetiae_contig14852:3848..3995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14852 3849..3995 -
1691682983.100259-CDS-L-elsbetiae_contig14852:3848..39951691682983.100259-CDS-L-elsbetiae_contig14852:3848..3995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14852 3849..3995 -
1622815599.4797463-CDS-L-elsbetiae_contig14852:4305..44101622815599.4797463-CDS-L-elsbetiae_contig14852:4305..4410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14852 4306..4410 -
1691682983.1096847-CDS-L-elsbetiae_contig14852:4305..44101691682983.1096847-CDS-L-elsbetiae_contig14852:4305..4410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14852 4306..4410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14852.3507.1

>prot_L-elsbetiae_contig14852.3507.1 ID=prot_L-elsbetiae_contig14852.3507.1|Name=mRNA_L-elsbetiae_contig14852.3507.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=199bp
LLWFGNRTPRIEPVRATFRRRPRELPMSGEIRRSRRMSAREQGEGATSRE
GDSPLRKPGSAVTEAGALETEGKPKRKPSRARRQLLSTPLGYNPYNSNQD
RSKQAEAELRAMAPAPANPAQNDDDRAGSAGGQASGDGESDADDGDGGDD
GDVIKRRRNRRRRRTGKTGRRKKTKARRDLRAGRRRASRLTRMWFQAAR
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mRNA from alignment at L-elsbetiae_contig14852:2033..4410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14852.3507.1 ID=mRNA_L-elsbetiae_contig14852.3507.1|Name=mRNA_L-elsbetiae_contig14852.3507.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2378bp|location=Sequence derived from alignment at L-elsbetiae_contig14852:2033..4410- (Laminarionema elsbetiae ELsaHSoW15)
CTTTTGTGGTTCGGAAACCGTACCCCTCGTATAGAGCCAGTGCGGGCGAC
TTTTAGGAGGCGACCACGCGAACTACCGATGTCTGGCGAGATCCGTAGGT
CACGGGTAATGTACCGACGGTCCTACTGAGAGTCGTCGAGAAGAAAACAC
GAAAAAAAGCGATGTACCGAGAGAGAAAACACGGCAGAACCACAAAATTG
ACAAGGTTCATATATGTACATATTCACAACTCGCCTGACACGTTAAATGC
CTGGAGACGTGAAATAGATGGTGCCTCAGGCATTCAGCACTTGTGCGGAA
TCTGCAAGGGTTGCGCGGAGCACGCCAAGCACACGAACACGGTCCTTCGT
GTTGGGAGTTTACCTCACCCCACTTCCTACCCCCCACGTCTATTCTCTGT
ATATATACGACGCAGAGAATGTCGGCGAGGGAGCAAGGAGAAGGAGCCAC
TTCGCGTGAGGGCGACTCCCCTCTGCGGAAGCCGGGATCGGCCGTGACTG
AAGCGGGGGCGCTAGAGACAGAGGGGAAGCCTAAAAGAAAACCATCTCGG
GCGAGGAGACAGGTACAATCCCTTTCCATTGGTTCCCATGAACGCCCTTG
CAAAAAATGGCCGCGTCAGGCCATGAACGGCACACCCCTTGTGCTCCGGG
GTTTTGCGCTTTTATTGGATTATAGTAAGGGGAGGCGTTTGTTTGTAAGG
AGGCGTCCGGACTACGTATGCTTTCGAGTCACTTCGATTTCGGACTGTTT
ACGGCTGCGACAGTTGGTTGTTGCAAACTGAATTAATGGTAAATGATGCG
AGAATGCTTTATGTTGGTCCCCGTCGTGCCCGTGTCTTGCTTTGTAGCCC
GAAACGGAAAGTATGCAGCAGTCGTCGGTACTCTGTTGGCTGAATTTCAT
CACGATAAGTTGCCGTGGTGCTGCTGGGTTCGACTTGTCAAACAGAGTTT
ATTTTGGTGGCTTAGGGAGCAAATGCGAATGACCAACGATAATTTCTCAC
AATTTTCAGAAACGTTTTCTTGGTTGAGAAAACTTATTGATTGTCTCACC
AAAATAATCCTTTCCGACGGTGGTGGGAAATGGTGCAACGGCCCGCCGAA
TACTCCAGAAATACCAACACCCACACCGATTACTCACCCTCCTGCTCACA
GATCGCTCCTAAACCTTGAAGACATGAGCTCCATGTTACTGAGCGTCACT
ACCCAAAGCAGATTTGCTCTGTGTTGCTTGTGTGGCAAGTACAAAGAATC
AACGGCCAGCTAGGCTGGAATCAAGCAACATTTTCTTAATTGCGTAGGGG
TTTTCTGCGCGAATCAGGCATAAACCCAATTCCCACCGACTTTTCTGAGA
AGACCGTAGGAACTGGCCTGAGCTGCCGACTGTGAGGGGCCCGTTGGAGG
TCGTGCGGGGTAGGTGGGGGGGGGGGGGGGGCGCCGGTCGAGATCGAAAG
ATCGACCGATCGTGTGGTGCGTTTCTCCGCTCTCTTTTGGCAGCCTTTGG
CGGTGTTTCTGCTCTGAGTCGTCGCGAAATCGCCCGCTCTTGTGCGGTGT
CGTCTCTGGCGGTCGGTGTACGTCGTGGCTCACCGCGACCGACTGTTCTT
TCCTCCTTCCTCGTCTCCGCTCTTTCTCCCGTTCTGCTTCGCTGCCGCTT
GTGCGTGTGTGTATCCGCGGTACAGCTTCTGTCGACGCCTCTCGGTTACA
ACCCGTACAACAGTAACCAGGACAGGTCCAAGCAGGCAGAGGCGGAGCTT
CGGGCCATGGCCCCCGCGCCGGCGAACCCCGCTCAGAACGACGACGACCG
GGCCGGGTCCGCCGGCGGTCAAGCCAGCGGTGAGGATCGGCACACAGCGC
TTGTGCCTCGCCCGAGCGAGGCTCCGTCTTTGGGGGGGAGGGTGCCGTGT
ATCACGCGTGTTAGGGGAGAAAGGGGGGGAAGCTGGGAGAGACCTCGCGG
TGGTGGGTCACAGCAGTTGAATTACCGACATATATATGCATATGCTGTTT
CGGTATGACCCCCCCCCTCCCCCCCTCCTCGCTGGATCTAAGAGCGCGCA
CTTTGTCACCGCACCGCACCACCCGAAGCCTTGGCGGCGACAAACACCAA
CAGCATACAGCAGTCTAGCGAAACGATCCATTTGTATGCCGGCCCGTTCG
CGCTTCTCCTCGTGCCCCCCACCCCCTGAAACTTAAGGCGACGGCGAGAG
TGACGCCGACGATGGTGACGGTGGCGATGACGGCGACGTAATCAAGAGGA
GGAGAAACAGGAGGAGGAGGAGGACGGGGAAGACAGGTCGGAGAAAGAAG
ACGAAGGCGAGGAGGGACCTGAGGGCGGGGAGGAGGAGGGCCAGCAGGTT
GACGAGGATGTGGTTCCAGGCAGCGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14852:2033..4410-

>mRNA_L-elsbetiae_contig14852.3507.1 ID=mRNA_L-elsbetiae_contig14852.3507.1|Name=mRNA_L-elsbetiae_contig14852.3507.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig14852:2033..4410- (Laminarionema elsbetiae ELsaHSoW15)
CTTTTGTGGTTCGGAAACCGTACCCCTCGTATAGAGCCAGTGCGGGCGAC
TTTTAGGAGGCGACCACGCGAACTACCGATGTCTGGCGAGATCCGTAGGT
CACGGCTTTTGTGGTTCGGAAACCGTACCCCTCGTATAGAGCCAGTGCGG
GCGACTTTTAGGAGGCGACCACGCGAACTACCGATGTCTGGCGAGATCCG
TAGGTCACGGAGAATGTCGGCGAGGGAGCAAGGAGAAGGAGCCACTTCGC
GTGAGGGCGACTCCCCTCTGCGGAAGCCGGGATCGGCCGTGACTGAAGCG
GGGGCGCTAGAGACAGAGGGGAAGCCTAAAAGAAAACCATCTCGGGCGAG
GAGACAGAGAATGTCGGCGAGGGAGCAAGGAGAAGGAGCCACTTCGCGTG
AGGGCGACTCCCCTCTGCGGAAGCCGGGATCGGCCGTGACTGAAGCGGGG
GCGCTAGAGACAGAGGGGAAGCCTAAAAGAAAACCATCTCGGGCGAGGAG
ACAGCTTCTGTCGACGCCTCTCGGTTACAACCCGTACAACAGTAACCAGG
ACAGGTCCAAGCAGGCAGAGGCGGAGCTTCGGGCCATGGCCCCCGCGCCG
GCGAACCCCGCTCAGAACGACGACGACCGGGCCGGGTCCGCCGGCGGTCA
AGCCAGCGCTTCTGTCGACGCCTCTCGGTTACAACCCGTACAACAGTAAC
CAGGACAGGTCCAAGCAGGCAGAGGCGGAGCTTCGGGCCATGGCCCCCGC
GCCGGCGAACCCCGCTCAGAACGACGACGACCGGGCCGGGTCCGCCGGCG
GTCAAGCCAGCGGCGACGGCGAGAGTGACGCCGACGATGGTGACGGTGGC
GATGACGGCGACGTAATCAAGAGGAGGAGAAACAGGAGGAGGAGGAGGAC
GGGGAAGACAGGTCGGAGAAAGAAGACGAAGGCGAGGAGGGACCTGAGGG
CGGGGAGGAGGAGGGCCAGCAGGTTGACGAGGATGTGGTTCCAGGCAGCG
AGGGCGACGGCGAGAGTGACGCCGACGATGGTGACGGTGGCGATGACGGC
GACGTAATCAAGAGGAGGAGAAACAGGAGGAGGAGGAGGACGGGGAAGAC
AGGTCGGAGAAAGAAGACGAAGGCGAGGAGGGACCTGAGGGCGGGGAGGA
GGAGGGCCAGCAGGTTGACGAGGATGTGGTTCCAGGCAGCGAGG
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