mRNA_L-elsbetiae_contig1485.3505.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1485.3505.1
Unique NamemRNA_L-elsbetiae_contig1485.3505.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1485.3505.1 vs. uniprot
Match: D7G626_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G626_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 8.910e-19
Identity = 48/77 (62.34%), Postives = 55/77 (71.43%), Query Frame = 2 
Query:  251 MSRFLEYGVFVPDPKKEGSAPEPSSSLSATQTGQWAQVGGKWLKVGPDGQPLVPPPRS-FSQTMPASSGNGGXGGAE 478
            MSRFLEYGVFVPDP    S+   S+  S T TGQWAQVGGKW KVGPDG+PL  P +S FSQ+ P + G GG GG +
Sbjct:    1 MSRFLEYGVFVPDP----SSKHGSTQSSQTATGQWAQVGGKWCKVGPDGKPLNAPSKSSFSQSSPINMGGGGEGGVD 73
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1485.3505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G626_ECTSI8.910e-1962.34Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1485contigL-elsbetiae_contig1485:21178..22184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size486
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1485.3505.1prot_L-elsbetiae_contig1485.3505.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1485 21951..22184 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.285207-UTR-L-elsbetiae_contig1485:21177..213101622815599.285207-UTR-L-elsbetiae_contig1485:21177..21310Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1485 21178..21310 +
1691682983.0058007-UTR-L-elsbetiae_contig1485:21177..213101691682983.0058007-UTR-L-elsbetiae_contig1485:21177..21310Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1485 21178..21310 +
1622815599.2980998-UTR-L-elsbetiae_contig1485:21833..219501622815599.2980998-UTR-L-elsbetiae_contig1485:21833..21950Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1485 21834..21950 +
1691682983.0166385-UTR-L-elsbetiae_contig1485:21833..219501691682983.0166385-UTR-L-elsbetiae_contig1485:21833..21950Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1485 21834..21950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.308554-CDS-L-elsbetiae_contig1485:21950..221841622815599.308554-CDS-L-elsbetiae_contig1485:21950..22184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1485 21951..22184 +
1691682983.0333908-CDS-L-elsbetiae_contig1485:21950..221841691682983.0333908-CDS-L-elsbetiae_contig1485:21950..22184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1485 21951..22184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1485.3505.1

>prot_L-elsbetiae_contig1485.3505.1 ID=prot_L-elsbetiae_contig1485.3505.1|Name=mRNA_L-elsbetiae_contig1485.3505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
MSRFLEYGVFVPDPKKEGSAPEPSSSLSATQTGQWAQVGGKWLKVGPDGQ
PLVPPPRSFSQTMPASSGNGGGGGAEAQ
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mRNA from alignment at L-elsbetiae_contig1485:21178..22184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1485.3505.1 ID=mRNA_L-elsbetiae_contig1485.3505.1|Name=mRNA_L-elsbetiae_contig1485.3505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1007bp|location=Sequence derived from alignment at L-elsbetiae_contig1485:21178..22184+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCCCATCACGGGCGTATCAGTGATCAACAACCCAAAACTGTCGTGGAG
AGTTAGGAACTAGCGCCTGCAGGAGAGCGCGGCATCCTGGCAACCACCAA
CGAGCACACCCCGTCGGCGCTTGATCTCTCCAGGTGAGAATCGGACGTCC
GTTTGTTCCAGCGAGCGAGCTGCTGTTGTATTCCGTTATGTATCACCGCT
CTGTTTTTGCGGTCCTCCCTATTGCGTACACTGCTGATGTTTTTGGTGAC
AGAACGCTTGTAGTGCACTTTCCCAGGGCGTAGTACGCGTAGCTCGAGCC
GAGGGAGAGAGAGGGCTTTGGGTGCATTTCGGTGGGTGGCCAGCCAACAA
GAGCCAGACGCAAAGAAAGCTGGTGTACAGGCAGAAGTGAGAACTTGGTG
CTCATCGTAGATTTTTGATTACTGATGGCCGGCCCCTCTGGTGTGTGCCC
GGATGACGGAGTCCCAACGGCTACTTGAAATTTTGGTGTGGGGCTGCTGT
GCCCGCTCCCGGTCCTGCCACTGGCGTGCCTGCTCTATCACTGCTGCCGG
GGTGTGTGTGTGTAACTGCAGGACTTCAAACTGAACCGTTGTCTGTATTT
TGCCTCTGTTTTTTTTTTGCGAATAAACTCCACTTTTTTTTTTCGCGCGC
AAGAAGAAGAAATTAAAAGACCTGCTTTGGACAGACAGAAAAGGGGGGAG
CGCGAGAGGGAGGGAGAGGGGCTGCTCCGGCGGCCAGAGTGGACTGACGT
ACTAGCCAGGCGCCGCCGGCAACATGTCACGCTTTCTAGAGTACGGGGTG
TTCGTCCCCGATCCCAAGAAGGAAGGCTCTGCGCCCGAGCCCTCCTCCTC
CCTCTCGGCGACCCAGACGGGGCAGTGGGCGCAGGTCGGCGGAAAGTGGC
TCAAGGTGGGCCCGGACGGTCAGCCCCTTGTTCCGCCGCCTCGGTCCTTT
TCACAGACCATGCCCGCGAGCAGCGGCAACGGGGGCGGGGGAGGGGCCGA
GGCGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1485:21178..22184+

>mRNA_L-elsbetiae_contig1485.3505.1 ID=mRNA_L-elsbetiae_contig1485.3505.1|Name=mRNA_L-elsbetiae_contig1485.3505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig1485:21178..22184+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCACGCTTTCTAGAGTACGGGGTGTTCGTCCCCGATCCCAAGAAGGA
AGGCTCTGCGCCCGAGCCCTCCTCCTCCCTCTCGGCGACCCAGACGGGGC
AGTGGGCGCAGGTCGGCGGAAAGTGGCTCAAGGTGGGCCCGGACGGTCAG
CCCCTTGTTCCGCCGCCTCGGTCCTTTTCACAGACCATGCCCGCGAGCAG
CGGCAACGGGGGCGGGGGAGGGGCCGAGGCGCAGATGTCACGCTTTCTAG
AGTACGGGGTGTTCGTCCCCGATCCCAAGAAGGAAGGCTCTGCGCCCGAG
CCCTCCTCCTCCCTCTCGGCGACCCAGACGGGGCAGTGGGCGCAGGTCGG
CGGAAAGTGGCTCAAGGTGGGCCCGGACGGTCAGCCCCTTGTTCCGCCGC
CTCGGTCCTTTTCACAGACCATGCCCGCGAGCAGCGGCAACGGGGGCGGG
GGAGGGGCCGAGGCGCAG
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