mRNA_L-elsbetiae_contig14833.3494.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14833.3494.1
Unique NamemRNA_L-elsbetiae_contig14833.3494.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14833.3494.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 6.760e-77
Identity = 140/162 (86.42%), Postives = 148/162 (91.36%), Query Frame = 1 
Query:    1 HAVQRVRDTEASHGERGAQQILPGEVAALRRQRLVKAAEPLTQRGLTRFQLSQMLEEKTKAFKDIRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYHEERKLARHLLRGVAKRAQLARRELCEGRAEARDGRVADAGRAICRHISLLVSNP 486
            HAV+RVRD EAS GE G   ILPGEVAA+RR RLVKAAEP  QRGLTRFQLSQMLEEKTKAFKD+RARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDY+EERKLARHLLRGVA R +LARRELCEGR +ARDGRVADAG AICRH+SLL S+P
Sbjct:  672 HAVRRVRDNEASRGE-GGLPILPGEVAAMRRHRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYNEERKLARHLLRGVANRTRLARRELCEGRPQARDGRVADAGVAICRHLSLLASSP 832
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BLAST of mRNA_L-elsbetiae_contig14833.3494.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 3.630e-76
Identity = 139/163 (85.28%), Postives = 147/163 (90.18%), Query Frame = 1 
Query:    1 HAVQRVRDTEASHGERGAQQILPGEVAALRRQRLVKAAEPLTQRGLTRFQLSQMLEEKTKAFKDIRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYHEERKLARHLLRGVAKRAQLARRELCEGRAEARDGRVADAGRAICRHISLLVSNPP 489
            HAV+RVRD EAS G  G   I PGEVAA+RRQRLVKAAEP  QRGLTRFQLSQMLEEKTKAFKD+RARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDY+EERKLARHLLRGVA R +LARRE CEGR +ARDGRVADAG AICRH+SLL S+PP
Sbjct:  240 HAVRRVRDNEASRGG-GGLPIPPGEVAAMRRQRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYNEERKLARHLLRGVANRTRLARREFCEGRPQARDGRVADAGVAICRHLSLLGSSPP 401
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14833.3494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FME7_ECTSI6.760e-7786.42Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHX4_9PHAE3.630e-7685.28SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14833contigL-elsbetiae_contig14833:200..2935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size547
Cds size546
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14833.3494.1prot_L-elsbetiae_contig14833.3494.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14833 200..2935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.5866113-CDS-L-elsbetiae_contig14833:199..2291622815598.5866113-CDS-L-elsbetiae_contig14833:199..229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14833 200..229 +
1691682982.6364095-CDS-L-elsbetiae_contig14833:199..2291691682982.6364095-CDS-L-elsbetiae_contig14833:199..229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14833 200..229 +
1622815598.5986724-CDS-L-elsbetiae_contig14833:787..10091622815598.5986724-CDS-L-elsbetiae_contig14833:787..1009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14833 788..1009 +
1691682982.6471019-CDS-L-elsbetiae_contig14833:787..10091691682982.6471019-CDS-L-elsbetiae_contig14833:787..1009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14833 788..1009 +
1622815598.6093276-CDS-L-elsbetiae_contig14833:1501..16511622815598.6093276-CDS-L-elsbetiae_contig14833:1501..1651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14833 1502..1651 +
1691682982.6571443-CDS-L-elsbetiae_contig14833:1501..16511691682982.6571443-CDS-L-elsbetiae_contig14833:1501..1651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14833 1502..1651 +
1622815598.6198018-CDS-L-elsbetiae_contig14833:2791..29351622815598.6198018-CDS-L-elsbetiae_contig14833:2791..2935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14833 2792..2935 +
1691682982.6674042-CDS-L-elsbetiae_contig14833:2791..29351691682982.6674042-CDS-L-elsbetiae_contig14833:2791..2935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14833 2792..2935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14833.3494.1

>prot_L-elsbetiae_contig14833.3494.1 ID=prot_L-elsbetiae_contig14833.3494.1|Name=mRNA_L-elsbetiae_contig14833.3494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
HAVQRVRDTEASHGERGAQQILPGEVAALRRQRLVKAAEPLTQRGLTRFQ
LSQMLEEKTKAFKDIRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEM
RLIATDYHEERKLARHLLRGVAKRAQLARRELCEGRAEARDGRVADAGRA
ICRHISLLVSNPPRAATAIVAGAVAAKPTQNG
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mRNA from alignment at L-elsbetiae_contig14833:200..2935+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14833.3494.1 ID=mRNA_L-elsbetiae_contig14833.3494.1|Name=mRNA_L-elsbetiae_contig14833.3494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2736bp|location=Sequence derived from alignment at L-elsbetiae_contig14833:200..2935+ (Laminarionema elsbetiae ELsaHSoW15)
CACGCCGTGCAGCGCGTTCGGGATACGGAGGTATGTACCCCCCTCCCCCC
TCCTGTGTGACCCCGGTTGGGGCGTCTAGCTAGGCGTAGTGGAAGAAGAG
GGCCAGTGGGGCAGACGACGGATACGCCAATAATGGAAGGAAACATTAAA
ATAAAAAAATGCATATACGTCACGGGCGGTCACCGGGGGTGAGATCGGGG
GGGGGGGGGGGGGGGGGGCTCCATTTAGCCGGGGCGAGAAACGTGTTGCT
TCTCTGCCGTGATGGCGATGGGAAAGGGCGGTCTGGGTTCATTTTACCCT
CGTGAAGACGATTAGCACCAACACACAACCTGCCGGGGGTTTGTAATAGT
TTTTGTTTCAAGTACGTGGTACGCTGTTTGGTTTTACTACGTAGGAGACG
GCGGTAAGATGCCCGCTGAGAGAGCATGTCACTGTCATCGTTTGCAAACC
ACTATTGACAGCAAATATAACGGTTTTTGGACGTGATGACAACAGGAACA
ACCACACAACAACAATAACCACAACAACAACAACAACAACAACAACAACA
GCAACATAGCCGGTTTTTTACTCTGCTTTTCCGAGCAGGCCTCGCACGGG
GAGAGAGGGGCCCAGCAGATCCTTCCCGGTGAGGTCGCCGCCCTGCGCCG
TCAGAGGCTTGTGAAGGCTGCGGAGCCCCTGACGCAGCGGGGGCTCACCC
GGTTCCAGTTGTCGCAGATGCTGGAGGAGAAGACTAAGGCCTTCAAGGAT
ATCCGGGCGAGGCTCAGGCTCGTGCTGGAGCGCAAGCCGCGGATTCTTCC
GCCGGTTAAGGTAATGTATGTTTGTGTTCACATTAAAAACCGTTCCGATC
TCTCCATCCAGTACCTCTCAATGTCCGTACTAATCCAACACTTGATGCGG
TCAGTTCCCGTGGTCGCAGGATAACTTATACCCAAGAAAAAGGTGAGGGC
GAGGTTAACCCAAGCCCTTTGGAGCTCTTTGCGGACGATGCCGATGCTGA
TGCATCCACAGGCAGCAGCAGCAGCAGCAGTAGTAGAAGTATGATGAAGG
GCAACCGAAGATGCGCTCCTTGAGTTAACTGCTGAAAAGACACGTTGACC
CCCCCTCCTCGCGACTTAATATAGGGTTTATCACGACCACGATAACGCCA
AATTTTTCAATACACATCCTACATACAGCCGCTCCGGAGACGGAAGACCC
TGTCGGACTTCCTTTCTCCTCGATGAAATGCGGCTCATCACCCCCCCCCC
CCAGCTCAATCCAAACCCGAACCCCCCCTGGCTTTGTATCTCAAAAACGC
AGCCGCCGCGGAGACGAAAGACCCTTTGGGACTTCCTCCTCGACGAGATG
CGGCTCATCGCCACCGACTACCACGAGGAGCGGAAGCTCGCCAGACATCT
CCTGAGAGGGGTGGCCAAGCGGGCACAGCTTGCGCGGAGGGAGCTGTGCG
AGGTATGTATGTTGTTGTTGTTGTTCTTCACATTAGCTCATATAATCGAG
AATGCTAATTCCAAAAATCTAGCAACTCACGGCCCGTGGTCGCAGAAGTG
CTAGGGCCATCAGAAGATTCGAAAAAACACGCGCAGATACACCGGGCTTA
TACAATATAAACGCAGGCGTTTCTGCCGCATCTCTCTACAAAACCAGTGA
CGTCATCTCAGAGACCATAGACCAAGATTCAGGGGGAAAACGAAAAATAA
TTTTATGTTGTTGTTGCTGTTGTTGTCGTTGTTGTTTCTCACATTAGCTC
TCTAAATAGCCCAAAAACATCCATAGGGGGGCCGTGGTCGCAAAAACAGG
GCACCCCCGACGCACCTGCTGAAGAAAGTAAAACAATAGGGTTAGTATGG
GACCCCCAACCCCATTTGTGTATAAGTAACCCCATTCGGACGCTTCGCGG
GTTTTCACGTATGGGACCCCTAATCCCCCCTCCCCCCCTTTACTTGAACC
CTCAACAACTGAACGACATGCTTCGTCTTGCACTCTCTCTGGCGCAATGT
AGTCTATAATTTGGTCGTATTTACTCTCGTGTGTGTGCGATTGGTTGATT
TTTTGGCGTGTACGTTGTCGGTCCGTATTTCAACCAGTAGCCTTCGCAAG
TTTTAGCGGAAGAAATCATATGGGAATAAAGTATGGAAACGGCTAATGGG
GGATCGGTTCGGGGTTAGGGTTAGGGTTAGGGTTACGGAACCCCTGTATA
CTATTTCCTATATATGTAGACAAGAATTATTCGCGACGGTGGCCGATTTC
AATTTCAACAACCCCCGCGTATATCAAGCTACACAGGGCATTCTTATTGC
GCTTACTTCTTGTCGCCCCTTAGATCCCTTAACCGCCTTGTGAATCAACA
AAATACCGTACATATCAGCCAAAATATTCCTGGAATATTCCTCGAAAGAA
GCACGATTTGTTCAACACAATAAAAAAAAACATACATGCATGCATGCATG
CATACATATACTAGAGAGCCTAGAGAGCTAGTGTGAGAAACAACAACAAC
ATACTCCATTCAAATAAGCCCCTACTGTACAAAACCACCTTTTTTTCACT
TCGTCCGCCCCCCCCCCCCCCTCCGCCCTTGAACCAACCCAGGGTCGGGC
GGAGGCCCGTGATGGCCGTGTGGCCGACGCCGGTAGGGCTATCTGCCGCC
ACATCTCCCTTCTCGTCTCCAATCCTCCTCGCGCCGCGACCGCCATCGTG
GCCGGAGCGGTGGCGGCGAAGCCGACCCAAAACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14833:200..2935+

>mRNA_L-elsbetiae_contig14833.3494.1 ID=mRNA_L-elsbetiae_contig14833.3494.1|Name=mRNA_L-elsbetiae_contig14833.3494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig14833:200..2935+ (Laminarionema elsbetiae ELsaHSoW15)
CACGCCGTGCAGCGCGTTCGGGATACGGAGCACGCCGTGCAGCGCGTTCG
GGATACGGAGGCCTCGCACGGGGAGAGAGGGGCCCAGCAGATCCTTCCCG
GTGAGGTCGCCGCCCTGCGCCGTCAGAGGCTTGTGAAGGCTGCGGAGCCC
CTGACGCAGCGGGGGCTCACCCGGTTCCAGTTGTCGCAGATGCTGGAGGA
GAAGACTAAGGCCTTCAAGGATATCCGGGCGAGGCTCAGGCTCGTGCTGG
AGCGCAAGCCGCGGATTCTTCCGCCGGTTAAGGCCTCGCACGGGGAGAGA
GGGGCCCAGCAGATCCTTCCCGGTGAGGTCGCCGCCCTGCGCCGTCAGAG
GCTTGTGAAGGCTGCGGAGCCCCTGACGCAGCGGGGGCTCACCCGGTTCC
AGTTGTCGCAGATGCTGGAGGAGAAGACTAAGGCCTTCAAGGATATCCGG
GCGAGGCTCAGGCTCGTGCTGGAGCGCAAGCCGCGGATTCTTCCGCCGGT
TAAGCCGCCGCGGAGACGAAAGACCCTTTGGGACTTCCTCCTCGACGAGA
TGCGGCTCATCGCCACCGACTACCACGAGGAGCGGAAGCTCGCCAGACAT
CTCCTGAGAGGGGTGGCCAAGCGGGCACAGCTTGCGCGGAGGGAGCTGTG
CGAGCCGCCGCGGAGACGAAAGACCCTTTGGGACTTCCTCCTCGACGAGA
TGCGGCTCATCGCCACCGACTACCACGAGGAGCGGAAGCTCGCCAGACAT
CTCCTGAGAGGGGTGGCCAAGCGGGCACAGCTTGCGCGGAGGGAGCTGTG
CGAGGGTCGGGCGGAGGCCCGTGATGGCCGTGTGGCCGACGCCGGTAGGG
CTATCTGCCGCCACATCTCCCTTCTCGTCTCCAATCCTCCTCGCGCCGCG
ACCGCCATCGTGGCCGGAGCGGTGGCGGCGAAGCCGACCCAAAACGGGGG
TCGGGCGGAGGCCCGTGATGGCCGTGTGGCCGACGCCGGTAGGGCTATCT
GCCGCCACATCTCCCTTCTCGTCTCCAATCCTCCTCGCGCCGCGACCGCC
ATCGTGGCCGGAGCGGTGGCGGCGAAGCCGACCCAAAACGGG
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