mRNA_L-elsbetiae_contig14826.3491.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14826.3491.1
Unique NamemRNA_L-elsbetiae_contig14826.3491.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14826.3491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14826contigL-elsbetiae_contig14826:1112..1631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size520
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14826.3491.1prot_L-elsbetiae_contig14826.3491.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14826 1196..1570 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.2716465-UTR-L-elsbetiae_contig14826:1111..11951622815598.2716465-UTR-L-elsbetiae_contig14826:1111..1195Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14826 1112..1195 +
1691682982.4292839-UTR-L-elsbetiae_contig14826:1111..11951691682982.4292839-UTR-L-elsbetiae_contig14826:1111..1195Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14826 1112..1195 +
1622815598.292817-UTR-L-elsbetiae_contig14826:1570..16311622815598.292817-UTR-L-elsbetiae_contig14826:1570..1631Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14826 1571..1631 +
1691682982.4554656-UTR-L-elsbetiae_contig14826:1570..16311691682982.4554656-UTR-L-elsbetiae_contig14826:1570..1631Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14826 1571..1631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.2827008-CDS-L-elsbetiae_contig14826:1195..15701622815598.2827008-CDS-L-elsbetiae_contig14826:1195..1570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14826 1196..1570 +
1691682982.442359-CDS-L-elsbetiae_contig14826:1195..15701691682982.442359-CDS-L-elsbetiae_contig14826:1195..1570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14826 1196..1570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14826.3491.1

>prot_L-elsbetiae_contig14826.3491.1 ID=prot_L-elsbetiae_contig14826.3491.1|Name=mRNA_L-elsbetiae_contig14826.3491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
MYGIRIEVRFCTRPVQICKFLGSRGHSRGHSRRQNIDECVLCPPVISSPK
AAPTTVRGHRDLQYACIARLMSRASALFLSFSLRLCLVVTVGLVLKQALS
YQLAAVQRFQGELLVPRCIRTSLG*
back to top

mRNA from alignment at L-elsbetiae_contig14826:1112..1631+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14826.3491.1 ID=mRNA_L-elsbetiae_contig14826.3491.1|Name=mRNA_L-elsbetiae_contig14826.3491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=520bp|location=Sequence derived from alignment at L-elsbetiae_contig14826:1112..1631+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTGAGCTAAATACTACTGATAGGTAAAAAGGCTAAAATAGCAGTATGT
ATGTATTGTACGAGTTCAACAGAAAACAGAACGAATGTATGGTATACGTA
TCGAGGTACGTTTTTGTACGCGGCCAGTCCAGATCTGCAAATTTCTTGGG
AGCAGGGGGCACAGCAGGGGGCACAGCAGGAGACAAAATATAGACGAGTG
TGTCCTCTGCCCTCCCGTTATCTCTTCTCCGAAAGCTGCGCCAACGACCG
TCAGGGGGCACCGTGACTTGCAGTATGCATGCATTGCGCGTTTGATGAGC
CGGGCTTCAGCTCTCTTTCTCTCGTTCTCTCTCCGTCTCTGTCTAGTTGT
GACGGTTGGTCTTGTCTTGAAGCAAGCCCTCTCGTACCAACTGGCAGCAG
TCCAACGTTTTCAGGGCGAGCTTCTCGTCCCAAGGTGTATACGCACTTCA
TTGGGATAACAAACTCCCACAGATGTAGTAGCTAAGATGCGCTTCCAGCG
AACACCCGCTTCAGCCGCAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14826:1112..1631+

>mRNA_L-elsbetiae_contig14826.3491.1 ID=mRNA_L-elsbetiae_contig14826.3491.1|Name=mRNA_L-elsbetiae_contig14826.3491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig14826:1112..1631+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGGTATACGTATCGAGGTACGTTTTTGTACGCGGCCAGTCCAGAT
CTGCAAATTTCTTGGGAGCAGGGGGCACAGCAGGGGGCACAGCAGGAGAC
AAAATATAGACGAGTGTGTCCTCTGCCCTCCCGTTATCTCTTCTCCGAAA
GCTGCGCCAACGACCGTCAGGGGGCACCGTGACTTGCAGTATGCATGCAT
TGCGCGTTTGATGAGCCGGGCTTCAGCTCTCTTTCTCTCGTTCTCTCTCC
GTCTCTGTCTAGTTGTGACGGTTGGTCTTGTCTTGAAGCAAGCCCTCTCG
TACCAACTGGCAGCAGTCCAACGTTTTCAGGGCGAGCTTCTCGTCCCAAG
GTGTATACGCACTTCATTGGGATAAATGTATGGTATACGTATCGAGGTAC
GTTTTTGTACGCGGCCAGTCCAGATCTGCAAATTTCTTGGGAGCAGGGGG
CACAGCAGGGGGCACAGCAGGAGACAAAATATAGACGAGTGTGTCCTCTG
CCCTCCCGTTATCTCTTCTCCGAAAGCTGCGCCAACGACCGTCAGGGGGC
ACCGTGACTTGCAGTATGCATGCATTGCGCGTTTGATGAGCCGGGCTTCA
GCTCTCTTTCTCTCGTTCTCTCTCCGTCTCTGTCTAGTTGTGACGGTTGG
TCTTGTCTTGAAGCAAGCCCTCTCGTACCAACTGGCAGCAGTCCAACGTT
TTCAGGGCGAGCTTCTCGTCCCAAGGTGTATACGCACTTCATTGGGATAA
back to top