mRNA_L-elsbetiae_contig14823.3490.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14823.3490.1
Unique NamemRNA_L-elsbetiae_contig14823.3490.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14823.3490.1 vs. uniprot
Match: D7FS08_ECTSI (PNPLA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS08_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 9.820e-19
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:  559 MRKLLSDEGGGKTLFDLDARGDSQAMLEAREDEHPVLEALRSRLEAGTKPGSHGDGLK 732
            MR LL+D   GK+LFDLDARGDSQAMLEAREDEHPV+E LR R++AGTKPGSHGDGLK
Sbjct:    1 MRTLLAD---GKSLFDLDARGDSQAMLEAREDEHPVVEVLRKRVKAGTKPGSHGDGLK 55
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BLAST of mRNA_L-elsbetiae_contig14823.3490.1 vs. uniprot
Match: A0A6H5KCB2_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCB2_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.260e-18
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:  559 MRKLLSDEGGGKTLFDLDARGDSQAMLEAREDEHPVLEALRSRLEAGTKPGSHGDGLK 732
            MR LL+D   GK+LFDLDARGDSQAMLEAREDEHPV+E LR R++AGTKPGSHGDGLK
Sbjct:    1 MRTLLAD---GKSLFDLDARGDSQAMLEAREDEHPVIEVLRKRVKAGTKPGSHGDGLK 55
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14823.3490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS08_ECTSI9.820e-1981.03PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KCB2_9PHAE1.260e-1881.03PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14823contigL-elsbetiae_contig14823:2664..3397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue4.7e-17
Seed eggNOG ortholog2880.D7FS08
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Patatin-like phospholipase
EggNOG OGs29GN1@1,2RPUA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAcyl transferase/acyl hydrolase/lysophospholipase
Ec32 orthologEc-12_006930.1
Exons1
Model size734
Cds size732
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.2393532-CDS-L-elsbetiae_contig14823:2663..33951622815598.2393532-CDS-L-elsbetiae_contig14823:2663..3395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14823 2664..3395 +
1691682982.4174683-CDS-L-elsbetiae_contig14823:2663..33951691682982.4174683-CDS-L-elsbetiae_contig14823:2663..3395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14823 2664..3395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14823.3490.1prot_L-elsbetiae_contig14823.3490.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14823 2664..3395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14823.3490.1

>prot_L-elsbetiae_contig14823.3490.1 ID=prot_L-elsbetiae_contig14823.3490.1|Name=mRNA_L-elsbetiae_contig14823.3490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
SNNKQQVLIDPFECVCVHAPNIPLYHPPSFSRILLWVPLMAKATCRARIR
GPRLQVMRGCYPTLCILLVLSLWESPSSTTVDAFVGLSPRTAPCIGGRCN
DAVPKHGLASGSRYPLRTHDRAAATAAAASSAEVAGTTAAEERGNSAAAA
AAATTAVAASAGGGGDTRKRKKKPRKERTRVTTAAEMRKLLSDEGGGKTL
FDLDARGDSQAMLEAREDEHPVLEALRSRLEAGTKPGSHGDGLK
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mRNA from alignment at L-elsbetiae_contig14823:2664..3397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14823.3490.1 ID=mRNA_L-elsbetiae_contig14823.3490.1|Name=mRNA_L-elsbetiae_contig14823.3490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=734bp|location=Sequence derived from alignment at L-elsbetiae_contig14823:2664..3397+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAACAACAAGCAACAAGTTCTAATCGATCCCTTCGAGTGTGTGTGTGT
GCATGCACCGAATATCCCTCTCTATCATCCTCCCTCTTTCTCACGCATAC
TCCTGTGGGTGCCGCTGATGGCGAAGGCCACTTGCAGGGCAAGAATTCGT
GGGCCGAGGCTACAGGTTATGCGAGGCTGCTATCCCACCCTCTGTATCCT
GCTCGTCCTTTCGCTATGGGAGTCACCTTCATCAACGACCGTCGATGCCT
TTGTGGGACTCTCACCCCGAACCGCACCATGCATCGGAGGTCGCTGCAAT
GATGCCGTTCCAAAACACGGGCTGGCTTCCGGGTCCCGCTACCCGTTACG
CACCCACGACCGGGCCGCTGCTACTGCTGCTGCTGCTTCCAGCGCCGAGG
TTGCAGGCACCACCGCTGCTGAGGAGAGGGGCAACTCAGCAGCAGCAGCA
GCAGCAGCAACAACAGCAGTAGCAGCGTCCGCCGGTGGCGGTGGGGACAC
TCGTAAGAGAAAAAAGAAGCCGAGGAAGGAGCGCACTCGCGTAACAACAG
CTGCCGAGATGAGGAAGCTCTTGTCCGACGAGGGCGGCGGCAAGACGTTG
TTCGATCTCGACGCACGAGGAGACTCGCAGGCGATGCTGGAGGCCCGGGA
GGATGAGCACCCGGTGCTTGAGGCCCTCAGGAGCAGACTCGAAGCGGGCA
CGAAGCCTGGCTCTCACGGGGATGGGCTGAAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14823:2664..3397+

>mRNA_L-elsbetiae_contig14823.3490.1 ID=mRNA_L-elsbetiae_contig14823.3490.1|Name=mRNA_L-elsbetiae_contig14823.3490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1464bp|location=Sequence derived from alignment at L-elsbetiae_contig14823:2664..3397+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAACAACAAGCAACAAGTTCTAATCGATCCCTTCGAGTGTGTGTGTGT
GCATGCACCGAATATCCCTCTCTATCATCCTCCCTCTTTCTCACGCATAC
TCCTGTGGGTGCCGCTGATGGCGAAGGCCACTTGCAGGGCAAGAATTCGT
GGGCCGAGGCTACAGGTTATGCGAGGCTGCTATCCCACCCTCTGTATCCT
GCTCGTCCTTTCGCTATGGGAGTCACCTTCATCAACGACCGTCGATGCCT
TTGTGGGACTCTCACCCCGAACCGCACCATGCATCGGAGGTCGCTGCAAT
GATGCCGTTCCAAAACACGGGCTGGCTTCCGGGTCCCGCTACCCGTTACG
CACCCACGACCGGGCCGCTGCTACTGCTGCTGCTGCTTCCAGCGCCGAGG
TTGCAGGCACCACCGCTGCTGAGGAGAGGGGCAACTCAGCAGCAGCAGCA
GCAGCAGCAACAACAGCAGTAGCAGCGTCCGCCGGTGGCGGTGGGGACAC
TCGTAAGAGAAAAAAGAAGCCGAGGAAGGAGCGCACTCGCGTAACAACAG
CTGCCGAGATGAGGAAGCTCTTGTCCGACGAGGGCGGCGGCAAGACGTTG
TTCGATCTCGACGCACGAGGAGACTCGCAGGCGATGCTGGAGGCCCGGGA
GGATGAGCACCCGGTGCTTGAGGCCCTCAGGAGCAGACTCGAAGCGGGCA
CGAAGCCTGGCTCTCACGGGGATGGGCTGAAGAGCAACAACAAGCAACAA
GTTCTAATCGATCCCTTCGAGTGTGTGTGTGTGCATGCACCGAATATCCC
TCTCTATCATCCTCCCTCTTTCTCACGCATACTCCTGTGGGTGCCGCTGA
TGGCGAAGGCCACTTGCAGGGCAAGAATTCGTGGGCCGAGGCTACAGGTT
ATGCGAGGCTGCTATCCCACCCTCTGTATCCTGCTCGTCCTTTCGCTATG
GGAGTCACCTTCATCAACGACCGTCGATGCCTTTGTGGGACTCTCACCCC
GAACCGCACCATGCATCGGAGGTCGCTGCAATGATGCCGTTCCAAAACAC
GGGCTGGCTTCCGGGTCCCGCTACCCGTTACGCACCCACGACCGGGCCGC
TGCTACTGCTGCTGCTGCTTCCAGCGCCGAGGTTGCAGGCACCACCGCTG
CTGAGGAGAGGGGCAACTCAGCAGCAGCAGCAGCAGCAGCAACAACAGCA
GTAGCAGCGTCCGCCGGTGGCGGTGGGGACACTCGTAAGAGAAAAAAGAA
GCCGAGGAAGGAGCGCACTCGCGTAACAACAGCTGCCGAGATGAGGAAGC
TCTTGTCCGACGAGGGCGGCGGCAAGACGTTGTTCGATCTCGACGCACGA
GGAGACTCGCAGGCGATGCTGGAGGCCCGGGAGGATGAGCACCCGGTGCT
TGAGGCCCTCAGGAGCAGACTCGAAGCGGGCACGAAGCCTGGCTCTCACG
GGGATGGGCTGAAG
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