prot_L-elsbetiae_contig1481.3485.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1481.3485.1
Unique Nameprot_L-elsbetiae_contig1481.3485.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length339
Homology
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BLAST of mRNA_L-elsbetiae_contig1481.3485.1 vs. uniprot
Match: D8LKK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKK6_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 1.330e-101
Identity = 166/215 (77.21%), Postives = 187/215 (86.98%), Query Frame = 0 
Query:  109 MYREQEAEEHSEDEDYEGPGKFDAFDRPAFKRRPIKNRNIQWALEDRKDYSKGGGIKYLGDKITQQMSRYATFKVDPERPQTIEVTPIDEWWQFKKAARDAGKMMSVKEAEEQMKKQDNFLGPLSLANKVLGRKTMEAAAREGGGSSRYGNLDREDTQVLQEAGVKLGGPED--GMNSVENQSGSEEGFGA-EKGDVDSDAGGEDDDFGDEVRSD 320
            MYREQEAEEHSEDEDYEGPGKFDAF+RPAFKRR IK R IQWALEDR+D+++GGGIKY GDKITQQMSRYATFKVDP RPQTIEVTPIDEWWQFKKA +D GK M+VKEAEE MKKQ+NFLGPLSLAN++LG+K++EAAA+E    SRYG LD EDTQVL+EAG+KL  PED   ++   + SGS+ G G  EKG+VDSDAGGEDDDFGDEVRSD
Sbjct:    1 MYREQEAEEHSEDEDYEGPGKFDAFERPAFKRRTIKTRAIQWALEDRRDHAQGGGIKYTGDKITQQMSRYATFKVDPNRPQTIEVTPIDEWWQFKKAPKDTGKNMTVKEAEELMKKQENFLGPLSLANRILGKKSLEAAAKEKAEQSRYGGLDHEDTQVLKEAGMKLASPEDTQAVDGFGDGSGSDGGAGEIEKGEVDSDAGGEDDDFGDEVRSD 215
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1481.3485.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKK6_ECTSI1.330e-10177.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011039Transcription Factor IIF, Rap30/Rap74, interactionSUPERFAMILY50916Rap30/74 interaction domainscoord: 136..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1481contigL-elsbetiae_contig1481:19728..25515 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1481.3485.1mRNA_L-elsbetiae_contig1481.3485.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1481 19728..25516 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1481.3485.1 ID=prot_L-elsbetiae_contig1481.3485.1|Name=mRNA_L-elsbetiae_contig1481.3485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=339bp
WVNPANRQVVVAVSCGQAKIHPTRLMSGKAAATGKGAAARGPGKKGPPNK
DGVIVSVEEKVWTLRMGARDPPCNVARFEEMWVGKGDSKRKVPRPPFDDP
GVFSKPAYMYREQEAEEHSEDEDYEGPGKFDAFDRPAFKRRPIKNRNIQW
ALEDRKDYSKGGGIKYLGDKITQQMSRYATFKVDPERPQTIEVTPIDEWW
QFKKAARDAGKMMSVKEAEEQMKKQDNFLGPLSLANKVLGRKTMEAAARE
GGGSSRYGNLDREDTQVLQEAGVKLGGPEDGMNSVENQSGSEEGFGAEKG
DVDSDAGGEDDDFGDEVRSDDEEEVGNDDANEGGGTLHQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011039TFIIF_interaction