mRNA_L-elsbetiae_contig14800.3481.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14800.3481.1
Unique NamemRNA_L-elsbetiae_contig14800.3481.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14800.3481.1 vs. uniprot
Match: D7G9C3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C3_ECTSI)

HSP 1 Score: 288 bits (737), Expect = 4.440e-84
Identity = 143/201 (71.14%), Postives = 158/201 (78.61%), Query Frame = 3 
Query:   42 LVVDDPSVFVFGEEIGVIAGVKLPLKSSAACLPEDWSRFESACWLQQPTRVTWGGVVDCCSVLYEKQTTVGTPCRRHPHDDPPLQGVMRSRSQDHPERLSP-GT---------VMWRNQPHGQCQVVGSTLKLEPFLTRKEETKEGYRAPRPLEVSFLPKRNVFYRSRFRLSVRGGEGAEIVLEGCGTYREDSRPGKLPNV 614
            LVVDDPSVFVFGEE GV+ GVKLPLKSSAACLPEDW+RFE+ACW QQP+RVTWGGV+DCCSV Y  Q      C+ HP+  PP QG   S+ ++ P  LSP GT         V+WRN+PHGQ QVVG TLKLE FLTRKEET EGYRAPRPLEV F PK NV YRSRFRL+V+GGE AE+VLEGCGTYREDSRPGKLP V
Sbjct: 1225 LVVDDPSVFVFGEEGGVLTGVKLPLKSSAACLPEDWNRFENACWPQQPSRVTWGGVIDCCSVHYPAQELGRRSCQNHPYGPPP-QGSFHSQRRELPNTLSPAGTGARPAMSAAVVWRNEPHGQRQVVGPTLKLETFLTRKEETTEGYRAPRPLEVVFAPKHNVLYRSRFRLTVKGGESAEVVLEGCGTYREDSRPGKLPRV 1424
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BLAST of mRNA_L-elsbetiae_contig14800.3481.1 vs. uniprot
Match: A0A7S2DBV6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBV6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.740e-14
Identity = 60/207 (28.99%), Postives = 86/207 (41.55%), Query Frame = 3 
Query:   48 VDDPSVFVFGEEIGVIAGVKLPLKSSAACLPEDWSRFESACWLQQPTRVTWGGVVDCCSVLYEKQTTVGTPCRRHPHDDPPLQGVMRSRSQDHPERLSPGTVMWRNQPHGQCQVVGSTLKLEPFLTRKEETKEGYRAPRPLEVSFLPKRNVFYRSRFRLSVRGGEGAEIVLEGCGTYREDSRPGKLPNV*GRSQQGFGAIFCFFEKD 668
            +D+PSVF F E  G   G  +PL+SS ACLP+D +R  +A + Q  T +T                                                             C    + + L   L R+ +  + +RAPRP+ V+F PK+N+ Y+SRFR  V  GEG ++VL G GTY EDSR    P++      G G    +  K+
Sbjct:  121 LDEPSVFNFSEWEGSQKGPSMPLESSGACLPKDVNRHGAAVFSQTHTNIT-------------------------------------------------------------CLHNEADIDLASNLRRRND--DNHRAPRPITVTFQPKKNLEYQSRFRFEVAYGEGFDVVLSGKGTYEEDSRRKPEPHI------GPGMHRAYLNKE 258
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BLAST of mRNA_L-elsbetiae_contig14800.3481.1 vs. uniprot
Match: A0A7S3ZMC5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMC5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.700e-13
Identity = 56/183 (30.60%), Postives = 74/183 (40.44%), Query Frame = 3 
Query:   48 VDDPSVFVFGEEIGVIAGVKLPLKSSAACLPEDWSRFESACWLQQPTRVTWGGVVDCCSVLYEKQTTVGTPCRRHPHDDPPLQGVMRSRSQDHPERLSPGTVMWRNQPHGQCQVVGSTLKLEPFLTRKEETKEGYRAPRPLEVSFLPKRNVFYRSRFRLSVRGGEGAEIVLEGCGTYREDSRP 596
            VDDPSVF F    GV+AG  LPL+S+AAC+P+D+ R     + Q  T ++W G                                                               +   L   LT   +     RAP+P+ V+F PKRNV Y SRFR  V  GE  ++VL+G G+Y ED  P
Sbjct: 1651 VDDPSVFAFEHVAGVVAGPSLPLRSAAACVPKDFMRDARPLFAQTLTELSWKGA--------------------------------------------------------------AVTSLAQSLTN--DAAANPRAPKPVRVTFSPKRNVRYCSRFRFDVHHGESFDVVLQGAGSYEEDVLP 1769
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BLAST of mRNA_L-elsbetiae_contig14800.3481.1 vs. uniprot
Match: F0YJY4_AURAN (MSP domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJY4_AURAN)

HSP 1 Score: 75.9 bits (185), Expect = 3.860e-11
Identity = 57/186 (30.65%), Postives = 79/186 (42.47%), Query Frame = 3 
Query:   48 VDDPSVFVFGEEIGVIAGVKLPLKSSAACLPEDWSRFESACWLQQPTRVTW---GGVVDCCSVLYEKQTTVGTPCRRHPHDDPPLQGVMRSRSQDHPERLSPGTVMWRNQPHGQCQVVGSTLKLEPFLTRKEETKEGYRAPRPLEVSFLPKRNVFYRSRFRLSVRGGEGAEIVLEGCGTYREDSRP 596
            VDDPSVF F +    + G  LPLKS+AAC+P+D++R   + + Q  T +TW   GG                                      DH E ++                      L+  L  + E +   R P P+ V+F PKR+V Y SRFR  V  GE  +IVL+G G+Y E+  P
Sbjct: 2241 VDDPSVFDFSDVTAHMTGPSLPLKSAAACVPKDFNRLADSLFSQTVTALTWKPGGG--------------------------------------DHDEAVT---------------------SLDAAL--RAEARANPRVPLPVTVTFKPKRDVKYCSRFRFDVHKGEPFDIVLQGVGSYEENVLP 2365
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BLAST of mRNA_L-elsbetiae_contig14800.3481.1 vs. uniprot
Match: A0A7S2RRU6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRU6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.640e-10
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = 3 
Query:  426 RKEETKEGYRAPRPLEVSFLPKRNVFYRSRFRLSVRGGEGAEIVLEGCGTYREDSRPGKLPNV*GRSQQGF 638
            RK  T E  ++PRPL V+F PKRNV Y+ R+R  V  GEG ++VL G GTY E ++P   P V  R   GF
Sbjct:  123 RKRNT-ENPKSPRPLVVTFRPKRNVAYQCRYRFEVEHGEGFDVVLSGMGTYEEGTKPNPPPRVGPRMYDGF 192
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14800.3481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G9C3_ECTSI4.440e-8471.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2DBV6_9STRA1.740e-1428.99Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3ZMC5_9STRA2.700e-1330.60Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YJY4_AURAN3.860e-1130.65MSP domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S2RRU6_9STRA1.640e-1049.30Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14800contigL-elsbetiae_contig14800:847..3021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.2
Seed ortholog evalue5.2e-37
Seed eggNOG ortholog2880.D7G9C3
Preferred nameDLEC1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008285,GO:0042127,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0065007
EggNOG free text desc.negative regulation of cell proliferation
EggNOG OGs28IDE@1,2QQQ5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1100
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14800.3481.1prot_L-elsbetiae_contig14800.3481.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14800 1330..2492 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.3719728-UTR-L-elsbetiae_contig14800:846..13291622815597.3719728-UTR-L-elsbetiae_contig14800:846..1329Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14800 847..1329 -
1691682981.8410788-UTR-L-elsbetiae_contig14800:846..13291691682981.8410788-UTR-L-elsbetiae_contig14800:846..1329Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14800 847..1329 -
1622815597.4277914-UTR-L-elsbetiae_contig14800:2492..26331622815597.4277914-UTR-L-elsbetiae_contig14800:2492..2633Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14800 2493..2633 -
1691682981.8895998-UTR-L-elsbetiae_contig14800:2492..26331691682981.8895998-UTR-L-elsbetiae_contig14800:2492..2633Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14800 2493..2633 -
1622815597.4421124-UTR-L-elsbetiae_contig14800:2860..30211622815597.4421124-UTR-L-elsbetiae_contig14800:2860..3021Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14800 2861..3021 -
1691682981.9012115-UTR-L-elsbetiae_contig14800:2860..30211691682981.9012115-UTR-L-elsbetiae_contig14800:2860..3021Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14800 2861..3021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.3821862-CDS-L-elsbetiae_contig14800:1329..14731622815597.3821862-CDS-L-elsbetiae_contig14800:1329..1473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14800 1330..1473 -
1691682981.8514867-CDS-L-elsbetiae_contig14800:1329..14731691682981.8514867-CDS-L-elsbetiae_contig14800:1329..1473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14800 1330..1473 -
1622815597.3929946-CDS-L-elsbetiae_contig14800:1936..20641622815597.3929946-CDS-L-elsbetiae_contig14800:1936..2064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14800 1937..2064 -
1691682981.8604236-CDS-L-elsbetiae_contig14800:1936..20641691682981.8604236-CDS-L-elsbetiae_contig14800:1936..2064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14800 1937..2064 -
1622815597.4121897-CDS-L-elsbetiae_contig14800:2449..24921622815597.4121897-CDS-L-elsbetiae_contig14800:2449..2492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14800 2450..2492 -
1691682981.872218-CDS-L-elsbetiae_contig14800:2449..24921691682981.872218-CDS-L-elsbetiae_contig14800:2449..2492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14800 2450..2492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14800.3481.1

>prot_L-elsbetiae_contig14800.3481.1 ID=prot_L-elsbetiae_contig14800.3481.1|Name=mRNA_L-elsbetiae_contig14800.3481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MRSRSQDHPERLSPGTVMWRNQPHGQCQVVGSTLKLEPFLTRKEETKEGY
RAPRPLEVSFLPKRNVFYRSRFRLSVRGGEGAEIVLEGCGTYREDSRPGK
LPNV*
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mRNA from alignment at L-elsbetiae_contig14800:847..3021-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14800.3481.1 ID=mRNA_L-elsbetiae_contig14800.3481.1|Name=mRNA_L-elsbetiae_contig14800.3481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2175bp|location=Sequence derived from alignment at L-elsbetiae_contig14800:847..3021- (Laminarionema elsbetiae ELsaHSoW15)
GGCTGAGAGAGGGGACCGATGCGGGGAGGCGCTTGAAGTCTTTGGTAGTT
GACGATCCTTCCGTTTTCGTGTTTGGCGAGGAGATCGGGGTGATCGCCGG
GGTGAAACTTCCCCTGAAATCTTCCGCAGCGTGTCTGCCCGAGGACTGGA
GCCGTTTCGAGGTGCGCCGTGCAGAGCACTCGCCGTCATTTGTTGTGCTT
CGCAATAAATACTTCCTCAGAGTCGAGGACAACGCAATAGTTGCACCTCT
CATCCGCTGCATGCTAGATAAAGCCAAGAGCAACGATCTCTTGACTGGCG
GGGGATGATTACCCCCCCGCCCTTTTAACACTAAACAACCGTTTTCGCGT
CTGGCCCGAACGCGCGATATCCAACCGTTTCTTCACAGAGCGCGTGCTGG
CTCCAGCAGCCAACACGGGTCACATGGGGCGGTGTGGTCGACTGCTGTTC
CGTTCTCTACGAGAAACAGACTACTGTTGGCACCCCCTGCCGTCGCCACC
CTCACGACGACCCACCGTTGCAAGGAGTCATGCGCTCTCGAAGCCAAGAT
CACCCCGAGAGATTGTCGCCAGGTGCGGACGGCCCCGGTGATGGCACCTG
GTGCTGCTGCCTTTGTCTCATGTGAAGAACGGATGCGGAGAACTCTGACT
CCGTTGGCACTTTTTTTTCGTTTCGAGGCACACCTGCTTTTTCTCTACGC
TACACTCAGTGTAGTAACAAGTTTTGTTGCTCCGCAGTTTCGCAAAACGC
CAAAGGAGTTCACGTCTATGCTCGATGTGTTCGTTGGCTGTCCCCCTTGC
TTAGTTTCGCCACCTGCACACTCATATGCCTCCGTGCATGATTTCAGAAC
AGTAGTCTCGGTTCAAAACGTTGTCCGGGTAAATTAGCTTGTCCTTCGCA
GTGGGGGGCCAACCAAGCTTTAACCTTTCGCCTTCTTCGTGCTTCAACCT
CCGGCAGGAACGGTCATGTGGCGAAATCAGCCGCACGGGCAATGTCAGGT
GGTCGGATCCACGCTTAAACTTGAACCGTTTCTGACTCGGAAAGAGGAGA
CGAAGGAGGGTTACCGAGCTCCAAGGCCGTTGGAGGTCCGTCGGGGGATG
TTTGTTTATCGCAACCATAGAAAAACAGGAGTATATGTGTCCGCGTTTTG
GAGTGCTGTAGTCTGCATGCCTTCAGCAACTTTGTGCTCTTCATCCTGGA
GCAAAATTGCAACCAAGGCGGAGTGCAGGGATAAAGCTTGCAGGCCGGTG
TGTGTGACCGATCCTGCAATTTATGAGAGGGTCGACGTGGGACAGTGCTG
CACATGGTTGTCCTCCATCAGCAAGCTCATATAGTCCCCCCCCCACATTG
GTGAATGCCACGCGCGATGCGACCGTTGCAGAAATGTCCCACCATTGTGG
GTTTTTGGTCTGCAGCAAACATTCATGTACGCACTGCGATCAGCATATAC
GCAGCTCTTTTCAATGAACCTATCCTTGCCGGGCCCAATACCCAATATGA
CGACGCTCATACACCGAACCGAACCGAACCAAATCAATCCCGGACCAGGT
AAGTTTTCTGCCGAAGAGGAACGTATTCTACCGGAGCCGGTTCCGCCTTT
CCGTCCGAGGCGGCGAAGGCGCGGAGATCGTGCTGGAAGGATGTGGGACG
TACCGCGAAGACTCTCGGCCCGGAAAATTGCCGAACGTATGAGGAAGAAG
TCAGCAAGGTTTCGGTGCAATTTTTTGCTTTTTCGAGAAAGACTAGAAAG
ACTAGTAGACTAGATTAGAATCGAGATAATTAAGGAGTGATGCCTCCATT
TAGACTACAGTACCGAGAGAGTGTGGCAAGGAGTGATTGCGTGGATGCGT
GTAGATTGTGTTCGTGCGTCGACCAGCACGCGCGTCGTTGCGAGTATTCT
ACATGGGAGGTGCGGAATATTGACAAAGGGCGCACAAGCTGCTTGCCCCC
TCTACCGCATTGAGAGTACATCCGCCATGCTGAGTGACGCGCGTCCCAAG
ATGAGTGGGTGTTGCACTCCTTAGTTAGTTTGTAGAACTAAAGTTTTCCC
TCTAGGTTTTCTCTCTGCAACACTAAGATCCTTGACCAATATAGAAACAT
GAAGCCGGTGATAATGAGGCCGGAGAATGTGACGCCGATAACTTGAGGCC
GGGAAAAGGGTGCGGAATGTTTTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14800:847..3021-

>mRNA_L-elsbetiae_contig14800.3481.1 ID=mRNA_L-elsbetiae_contig14800.3481.1|Name=mRNA_L-elsbetiae_contig14800.3481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig14800:847..3021- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCTCTCGAAGCCAAGATCACCCCGAGAGATTGTCGCCAGATGCGCT
CTCGAAGCCAAGATCACCCCGAGAGATTGTCGCCAGGAACGGTCATGTGG
CGAAATCAGCCGCACGGGCAATGTCAGGTGGTCGGATCCACGCTTAAACT
TGAACCGTTTCTGACTCGGAAAGAGGAGACGAAGGAGGGTTACCGAGCTC
CAAGGCCGTTGGAGGAACGGTCATGTGGCGAAATCAGCCGCACGGGCAAT
GTCAGGTGGTCGGATCCACGCTTAAACTTGAACCGTTTCTGACTCGGAAA
GAGGAGACGAAGGAGGGTTACCGAGCTCCAAGGCCGTTGGAGGTAAGTTT
TCTGCCGAAGAGGAACGTATTCTACCGGAGCCGGTTCCGCCTTTCCGTCC
GAGGCGGCGAAGGCGCGGAGATCGTGCTGGAAGGATGTGGGACGTACCGC
GAAGACTCTCGGCCCGGAAAATTGCCGAACGTATGAGTAAGTTTTCTGCC
GAAGAGGAACGTATTCTACCGGAGCCGGTTCCGCCTTTCCGTCCGAGGCG
GCGAAGGCGCGGAGATCGTGCTGGAAGGATGTGGGACGTACCGCGAAGAC
TCTCGGCCCGGAAAATTGCCGAACGTATGA
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