mRNA_L-elsbetiae_contig1030.348.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1030.348.1 vs. uniprot
Match: D7FYY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY5_ECTSI) HSP 1 Score: 840 bits (2170), Expect = 1.460e-282 Identity = 693/1182 (58.63%), Postives = 753/1182 (63.71%), Query Frame = 3 Query: 402 VDGEASKPAASVVAP-----KQEQKGDAKENALREALILADGPNKILREVERIPALRRLSDSALRVTSATPADGRLAALALYRLGAEARAAESASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVSXXXXXXXXXXXXXXXXAAEPAAVDHS--TKAGQLQARD-RVGHDAAASASAXXXXXXAGLAAPEGEQTHGSVPGSEETERPEEGDAGDSATAEAADDSTAALSSKERGVGKGGAEREXXXXXXXXXXXX-----AVPVAFDMEHVKSDQRFEQLVEIVECVAEELSVSDISKASHRRGRGEQRGVVWGLSILGHVPRNSLLESLAGLLTGRFRLESG-GAREGAAEXXXXXXXXXXXXXXXXXXXERGAD------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVVSKAVEAKADGIGTP-------ATSGTDLATAALSFAYAHARLDISTGELLEVIAACATPQLKSTPLRDLANLSWAFAVQRHLDPRMMKGVSREIVSDRAVGRMSAKDASIFAWAYGMLGLRPDRVIQALTREGLATVGEATPHDLSNLAWGLARAGLAEGGGDDFEDEGEGDGEAKPGGEEGRGVGEEARMQEEDDVRSRGRGRDAGGRXXXXXXEGL--WRLGWMRGKQRGRRWRRDHEHQAEGEEEEGXXXXXXXXEQEGGFLGVEVSTTSGGAADGGIGPAADLVDPAPPGRDAEVS-----FQPKQLSRLCWALGAWDAQGVASLLPEAGLFAARALSEAGQRPKEMQSPPVGQVLWAFATLVGNADSPAQELAGLVGALAEGFESEGAGGA--LGXXXXXXXXXXXXGLDAATACDVLWSFATMGHPAHSLCEAMARDLVDKVPKLHPSSVSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFYVTKEDLESLSPSASANLLWGLAKTEAAFAESFDRECLGAVAADMGPKLLSFSPRELCRTAWALGRLGLGGIFGPGSVVDGGXXXXXESEDGGYGSALDGG-EMSGLMDKLLRECSKWLEIFTPQDLETLLWAICRLEHRADELVAEMAKEGKRRQEELQSLLQQSGPSAARDAAFHLGAFRHLLAKYRSIDFDGLRAKGRYRRGKSMLSRMFRER 3836 DG KPAA+ KQE KGDAKE ALREAL+ ADGP+KILRE ERIPALRRLSDSALRVTSATP+DGRLAALALYRLGA ARAAESA XXXXXXXXX XXXXXXXXXXXX AA + D S T L A R G + AG A G T VPG + E G AG+S + D A S G GG E E A AFDME V+SDQRFEQLVEI+ECV+++LSVSD SK VVWGLSILGHVPRNSLLESLA LT R R E+ A XXXXXXXXXXXXXXXXX E GA+ A XXXXXX ++AV+ G +P TSGTDLATAALSFAYAHARLDISTGELLEVIAACATPQL + PLRDLANLSWAFAVQ L P MM GV REIVS RA GRM+AKDASI AWAYGMLGLRP RVI+ALTREGLATV EATPHDLSNLAWGLA+AG XXXXXX W LGW++ RW R + +GEEE+ +EG G E S+ + ADLV GR + + FQP+QLSRLCWALGAW +G LL +FAAR+LSEAGQ PKE + + QVLWAFATLVG ADSPA ELAGLVGALAEGFE+EGA G XXXX GLDAATACDVLWSFATMGHPAHSLCEAMARDLV+KVP+L PSSVS LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQF VTK+DL SLSPSASANLLWGL KTEAAFA+ FDRECL AVAADMGPKLLSFSPRELCRTAWALGRLGLGG+ G DGG +S+D G A+DGG E+SGLMDKLL ECSKW+E+FTPQ+LETLLWA+CRLEHRAD+LVA+MA EGKRRQEEL SLL+QSGPSAARDAAFHLGAFRHLLAKYR +DFDG RA+GRYRRGKSM+SRMFRER Sbjct: 59 TDGATVKPAAAXXXXXXXXVKQEPKGDAKEKALREALLSADGPSKILREAERIPALRRLSDSALRVTSATPSDGRLAALALYRLGAAARAAESAPSSGLASTAASAVEGSVAADGERSAVGPSKTGGEGXXXXXXXXXERPERXXXXXXXXXXXXERPAAATESGDQSSTTPTATLSAATARQGGE-----PFNNEQGQAGTGAATG--TGIEVPGVKGDTPEEAGAAGESVKTK---DPALAGSVPRSSEGGGGVEEEVGTPAAAASVGSSPNKGATTAAFDMEEVRSDQRFEQLVEIIECVSKDLSVSDTSK------------VVWGLSILGHVPRNSLLESLATFLTDRLRQEAATAAXXXXXXXXXXXXXXXXXXXXXXXEGEGGANGQKVTVAGGAEDGISSPSSSDSPQEGGLGSGSGKPAEGHDDGQLSGIEGGNXXXXXXXXXXAEAVDKATTGAASPKKRDAVACTSGTDLATAALSFAYAHARLDISTGELLEVIAACATPQLAAMPLRDLANLSWAFAVQHRLHPEMMAGVGREIVSSRASGRMAAKDASILAWAYGMLGLRPARVIEALTREGLATVQEATPHDLSNLAWGLAKAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGLGWVKS-----RWERGSGPEGDGEEEQ--EDCGEGLSEEGSGSG-EASSDPADIHATSVETLADLVSRREGGRGFDGAESFQHFQPRQLSRLCWALGAWHGRGSVKLLGS-DIFAARSLSEAGQHPKEYTAEELAQVLWAFATLVGKADSPAHELAGLVGALAEGFETEGARGMGXXXXXXXVSAAGREGGLDAATACDVLWSFATMGHPAHSLCEAMARDLVNKVPELPPSSVSQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVLFGGPATDGGGG---DSDDDG--PAVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 1204
BLAST of mRNA_L-elsbetiae_contig1030.348.1 vs. uniprot
Match: A0A6H5JR07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR07_9PHAE) HSP 1 Score: 741 bits (1913), Expect = 7.790e-246 Identity = 574/1170 (49.06%), Postives = 636/1170 (54.36%), Query Frame = 3 Query: 519 KILREVERIPALRRLSDSALRVTSATPADGRLAALALYRLGAEARAAESASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVSXXXXXXXXXXXXXXXXAAEPAAVDHSTKAGQLQARDRVGHDAAASASAXXXXXXAG-LAAPEGEQTHGS-------VPGSEETERPEEGDAGDSATAEAADDSTAALSSKERGVGKGGAER--EXXXXXXXXXXXXAVPVAFDMEHVKSDQRFEQLVEIVECVAEELSVSDISKASHRRGRGEQRGVVWGLSILGHVPRNSLLESLAGLLTGRFRLESGGAREGAAEXXXXXXXXXXXXXXXXXXXERGADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------EVVVSKAVEAKADGIGTPATSGTDLATAALSFAYAHARLDISTGELLEVIAACATPQLKSTPLRDLANLSWAFAVQRHLDPRMMKGVSREIVSDRAVGRMSAKDASIFAWAYGMLGLRPDRVIQALTREGLATVGEATPHDLSNLAWGLARAGLAEGGGDDFEDEGEGDGEAKPGGEEGRGVGEEARMQEEDDVRSRGRGRDAGGRXXXXXXEGLWRLGWMRGKQRGRRWRRDHEHQAEGEEEEGXXXXXXXXEQEGGFLGVEVSTTSGGAADGGIGPAADLVDPAPPGRDAEVS-------------------FQPKQLSRLCWALGAWDAQGVASLLPEAGLFAARALSEAGQRPKEMQSPPVGQ-------------VLWAFATLVGNADSPAQELAGLVGALAEGFESEGAGG--ALGXXXXXXXXXXXXGLDAATACDVLWSFATMGHPAHSLCEAMARDLVDKVPK-LHPSSVSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFYVTKEDLESLSPSASANLLWGLAKTEAAFAESFDRECLGAVAADMGPKLLSFSPRELCRTAWALGRLGLGGIFGPGSVVDGGXXXXXESEDGGYGSALDGG-EMSGLMDKLLRECSKWLEIFTPQDLETLLWAICRLEHRADELVAEMAKEGKRRQEELQSLLQQSGPSAARDAAFHLGAFRHLLAKYRSIDFDGLRAKGRYRRGKSMLSRMFRER 3836 +ILREVERIPALRRLSDSALRVTSATP+DGRLAALALYRLGA ARAAESA + E + A ++RD+ A+ SA +G+ G+ VPG + E G AG+S + D+ A G GG E AFDME V+SDQRFEQLVEI+ECVA++LSV VWGLSILGHVPRNSLLESLA LT R R E A XXXXXXXXXXXXXXXXXX E GAD + A K D + TSGTDLATAALSFAYAHARLDISTGELLEVIAACATPQL + PLRDLANLSWAFAVQR L P MM GV REIVS RA G M+AKDASI AWAYGMLGLRP RVI+ALTREGLATV EATPHDLSNLAWGLA+AG GG D A E+ + + XXXXXX GEE E E+ A + ADLV P G+ E S FQP+QLSRLCWALGAW+ +G L P + +F AR+LSEAGQ PKE + + Q VLWAFATLVG ADSPAQELAGLVGALAEGFE+EGA G GXXXX GLDAATACDVLWSFAT+GHPAHSLCEAMARDL+ V + L +V GYTVSLKRQF +TK+DL SLSPSASANLLWGL KTEAAFA+ FDRECL AVAADMGPKLLSFSPRELCRTAWALGRLGLGG+F G DGG +S+D G A+DGG E+SGLMDKLL ECSKW+E+FTPQ+LETLLWA+CRLEHRAD+LVA+MA EGKRRQEEL SLL+QSGPSAARDAAFHLGAFRHLLAKYR +DFDG RA+GRYRRGKSM+SRMFRER Sbjct: 9 RILREVERIPALRRLSDSALRVTSATPSDGRLAALALYRLGAAARAAESAPSSGLASTAASAVEGSVAADGER-----------------------AAVGPSKAGGRGKRGAVERPESGGAEAEKPAAATESRDQSSTAPTATLSAATVRQGGDPFNNEQGQADTGATTGTGIEVPGVMGDDPQEPGAAGESVKTK---DAALAGGVPRSPEGAGGVEEFGAPAAAVGSSPHKGTTTAAFDMEEVRSDQRFEQLVEIIECVAKDLSV------------------VWGLSILGHVPRNSLLESLATFLTDRLRQE---AXXXXXXXXXXXXXXXXXXXXXXXXDEHGADGGKAAVGGSTEDGISSPSTGDSLQEGGLGSGSGKPAEGLNRGQLSGIEGDNAGGXXXXXXXXXXXEGVDKATTGAASAKKQDAVAC--TSGTDLATAALSFAYAHARLDISTGELLEVIAACATPQLAAMPLRDLANLSWAFAVQRRLHPEMMAGVGREIVSSRAFGHMAAKDASILAWAYGMLGLRPSRVIEALTREGLATVQEATPHDLSNLAWGLAKAGA---GGXXXXXXXVEDPVASAASEDSGSGXXAGKXAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEVEQEDCGEGLSEEGXXXXXXXXXXXXXNATS--VETLADLV---PGGKKEEASMEQRLGEAVLARATDSFQHFQPRQLSRLCWALGAWNGRGSVKL-PGSDVFVARSLSEAGQHPKEYTAEELAQARRQRRRGGGVVRVLWAFATLVGKADSPAQELAGLVGALAEGFETEGARGMGGGGXXXXVSAAGREGGLDAATACDVLWSFATLGHPAHSLCEAMARDLLSVVERRLDEFTVEEAASALWALGAL----------------------------------GYTVSLKRQFDLTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVFFGGPATDGGGG---DSDDDG--PAVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 1081 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1030.348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1030.348.1 >prot_L-elsbetiae_contig1030.348.1 ID=prot_L-elsbetiae_contig1030.348.1|Name=mRNA_L-elsbetiae_contig1030.348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1273bp MKPPVMIALICTSVRNVSSGARSTTTVEGLYWKSSTFAATAVAGRARTATback to top mRNA from alignment at L-elsbetiae_contig1030:14657..27202- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1030.348.1 ID=mRNA_L-elsbetiae_contig1030.348.1|Name=mRNA_L-elsbetiae_contig1030.348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=12546bp|location=Sequence derived from alignment at L-elsbetiae_contig1030:14657..27202- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1030:14657..27202- >mRNA_L-elsbetiae_contig1030.348.1 ID=mRNA_L-elsbetiae_contig1030.348.1|Name=mRNA_L-elsbetiae_contig1030.348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7638bp|location=Sequence derived from alignment at L-elsbetiae_contig1030:14657..27202- (Laminarionema elsbetiae ELsaHSoW15)back to top |