mRNA_L-elsbetiae_contig1479.3473.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1479.3473.1 vs. uniprot
Match: D7FNG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG5_ECTSI) HSP 1 Score: 896 bits (2316), Expect = 6.110e-315 Identity = 533/773 (68.95%), Postives = 596/773 (77.10%), Query Frame = 1 Query: 1 RMKTALAWSARWNQHTDKLASQAHLCQAWRQVLEVAFVSAGALLFGPREDPSKAVASRRLLPSLLLGILRKLTGMGGAEERLLQPLGRACLSVAGVMRDLGAWAPLQLAEAKQLLSSLVQCLAGSKGDVASSKAGTPGDGSKPYRAFLYGCLVHLLEHTQGDARLDWSHTHSPSGXXXXXXXXXXXXXXXXXXXXXRPSTSLSHGALREGHRLQNREVLREQIEPLAYMLNEDSRQGPSMTQCLGLSVLSSIIKTLGPSGPSNGPSAGDRSGG------GGGSSIGCLNEDEKLMKELQGAQTRTAVLGFLHGKAFFGELSKLLGGVRPGSGVVVPQLLVDSILGLLTQVACSAEGASFLLEAGVVERLTGSEGMARASQIAVEATKLGALGVANGNGDAPAGVFQPDGPDSLRVLVTPPLLLLQGMLSSLPSNALLAAQASALLARHARLVRHVLLFKESSLDALXXXXXXXXXXAHVSKPPFQGVLDRTAGAEGARDWRDLAERALIAFGGNPLPQGRGDGGGGSG-WWGGLQPLTPPERSMANERCQAPPGGPSEWSVFDTAKLEASQRALAHAVDVLRCRAAAEXXXXXXXXXXXXXVAGALPGPVAVSRLAVSPEGLCLALRACVENGGXXXXXXXXXXXXXXXXXXXXX---------AMGSNGAAASATGAGTCLLRGLPYVVEGLLAALLDLVDDGSEEGRGQLPVYRKGLVPTLTELLQDTSKDPFVLRAARALIGRVSGTLIGREGEGYAASAVDGSATMDVA 2271 R++TAL W+ WN HTD LASQ+HLCQAWRQVLEVAF++A LLFGPREDPSKAVASRRLLP+LLLG+LRKLTGMGGA+++LL+PLGRACLSVAGVMRDLGAWAPLQLAE+KQL+SSL+QCLAG+KG VASS TPGDGSK YRAFLYGCL+HLLEHTQG+ DW RP+TSLSH ALREGHRLQNRE+LREQIEPLA+MLNEDSR P +TQCLGLS+LSSI+ TLG + P G +R G G +S+GCL+EDE+++KELQGAQTRTA+LGFLH KAFFGELSKLLGGVRPGSG+ + L++++I GL TQVACS+EGA LL+AGVV+RL+ SE MARASQIA +A+ LGALG G+ A VFQPDGP+SLRVLV P LLLLQGMLSSLP N LLA QA++LL+RHA+LVRHVLLFKESSL AL HVSKPP QGVLDRT G + AR WRDLAERAL+AFGGNPLPQG G GGGG G WW G+QPLT ERSMANERC+APPGGPSEWS FDTAKLEASQRALAHAVDVLRC+AA XXXXXXXXXXXXX P VAVSRLAVSPEGLC+ALRACVE GGXXXXXX XXXXX A SNGAA + A LLRGLPYVVEGLLAALL LVD GSEEGR QL YRKGLVPTLTELLQDTS+DPFVLR+AR LIGRVS A ++ S +MDVA Sbjct: 4 RVRTALNWAIHWNIHTDNLASQSHLCQAWRQVLEVAFINAPQLLFGPREDPSKAVASRRLLPALLLGMLRKLTGMGGADDKLLKPLGRACLSVAGVMRDLGAWAPLQLAESKQLISSLLQCLAGTKGLVASSMENTPGDGSKTYRAFLYGCLIHLLEHTQGEPHADW----------FLGVRAAPGAGSAAETAAGRPATSLSHAALREGHRLQNRELLREQIEPLAHMLNEDSRYAPDVTQCLGLSLLSSIVNTLGAASP-GGMDGRERGNGXXXXXXGVAASLGCLSEDERVVKELQGAQTRTALLGFLHSKAFFGELSKLLGGVRPGSGIALSPLVMEAIFGLFTQVACSSEGAGHLLDAGVVKRLSESESMARASQIAGQASNLGALGATRGDSTA---VFQPDGPESLRVLVVPSLLLLQGMLSSLPDNVLLADQAASLLSRHAQLVRHVLLFKESSLGALDAMSAVLAVLTHVSKPPLQGVLDRTPGTDVARGWRDLAERALVAFGGNPLPQGAGVGGGGDGGWWEGVQPLTHGERSMANERCRAPPGGPSEWSAFDTAKLEASQRALAHAVDVLRCQAAXXXXXXXXXXXXXXXXGP--PVAVAVSRLAVSPEGLCVALRACVETGGXXXXXXGAXXXXXQRLGLGVGGGHRADALGARASNGAAGCSGNAR--LLRGLPYVVEGLLAALLVLVDAGSEEGRSQLAAYRKGLVPTLTELLQDTSRDPFVLRSARTLIGRVS-----------ARESLVASGSMDVA 747
BLAST of mRNA_L-elsbetiae_contig1479.3473.1 vs. uniprot
Match: A0A6H5L557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L557_9PHAE) HSP 1 Score: 782 bits (2019), Expect = 2.740e-267 Identity = 495/789 (62.74%), Postives = 553/789 (70.09%), Query Frame = 1 Query: 1 RMKTALAWSARWNQHTDKLASQAHLCQAWRQVLEVAFVSAGALLFGPREDPSKAVASRRLLPSLLLGILRKLTGMGGAEERLLQPLGRACLSVA--GVMRDLGAWAPLQLAEAKQLLSSLVQCLAGSKGDVASSKAGTPGDGSKPYRAFLYGCLVHLLEHTQGDARLDWSHTHSPSGXXXXXXXXXXXXXXXXXXXXXRPSTSL---SHGALREGHRLQNR---EVLREQIEPLAYMLNEDSRQGPSMTQCLGLSVLSSIIKTLGPSGPSNGPSAGDRSGGGG-----GSSIGCLNEDEKLMKELQGAQTRTAVLGFLHGKAFFGELSKLLGGVRPGSGVVVPQLLVDSILGLLTQVACSAEGASFLLEAGVVERLTGSEGMARASQIAVEATKLGALGVANGNGDAPAGV------------------------FQPDGPDSLRVLVTPPLLLLQGMLSSLPSNALLAAQASALLARHARLVRHVLLFKESSLDALXXXXXXXXXXAHVSKPPFQ----------GVLDRTAGAEGARDWRDLAERALIAFGGNPLPQGRGDGGGGSG-WWGGLQPLTPPERSMANERCQAPPGGPSEWSVFDTAKLEASQRALAHAVDVLRCRAAAEXXXXXXXXXXXXXVAGALPGPVAVSRLAVSPEGLCLALRACVENGGXXXXXXXXXXXXXXXXXXXXXA---------MGSNGAAASATGAGTCLLRGLPYVVEGLLAALLDLVDDGSEEGRGQLPVYRKGLVPTLTELLQDTSKDPFVLRAARALIGRVS 2196 R++TAL W+ WN HTD LASQ+HLCQAWRQVLEVAF+SA LLFGPREDPSKAVASRRLLP+LLLG+LRKLTGMGGA+++LL+PLGRACLSVA GV EA L+S V G ASSK TPGDGSK YRAFLYGCL+HLLEHTQG+ DW RP+TSL G E+LREQIEPLA+MLNEDSR P +TQCLGLS+LSSI+ TLG + P G G+R G +S+GCL+EDE+++KELQGAQTRTA+LGFLH KAFFGELSKLLGGVRPGSGV +P L++++I GLLTQVACS+EGA+ LL+AGVV+RL+ SE MARASQIA +A+KLGALG + A V FQPDGP+SLR+LV P LLLLQGMLSSLP+N LLA QA++LL+RHA+LV+HVLLFKESSL AL AHVSKPP Q GVLDRT G E AR WRDLAERAL+AFGGNPLPQG G GGGG G WWGG+QPLT ERSMANERC+APPGGPSEW+ FDTAKLEASQRALAHAVDVLRC+AA XXXXXXXXXXXXX VAVSRLAVSPEGLC+ALRACVENGGXXXX XXXX SNGAA + A LLRGLPYVVEGLLAALL LVD GSEEGR QL YRKGLVPTLTELLQDTS+DPFVLRAAR LIGRVS Sbjct: 162 RVRTALNWAIHWNIHTDNLASQSHLCQAWRQVLEVAFISAPQLLFGPREDPSKAVASRRLLPALLLGMLRKLTGMGGADDKLLKPLGRACLSVAAGGV-------------EAADLVSPAVPGWYGR--GXASSKENTPGDGSKTYRAFLYGCLIHLLEHTQGEPHADW----------FGGVRAAPGAGSAAETATGRPATSLVRQKRGMAXXXXXXXXEHAGELLREQIEPLAHMLNEDSRYAPDVTQCLGLSLLSSIVNTLGAASP-GGMDDGERGSGXXXXXSVAASLGCLSEDERVVKELQGAQTRTALLGFLHSKAFFGELSKLLGGVRPGSGVALPPLVMEAIFGLLTQVACSSEGAAHLLDAGVVKRLSESESMARASQIAGQASKLGALGATRSDVRGRASVAGRVRVASKQKKECSLGMVWSTAVFQPDGPESLRLLVVPSLLLLQGMLSSLPNNVLLADQAASLLSRHAQLVKHVLLFKESSLGALDAMSAVLAVLAHVSKPPLQMAKRTMWCSQGVLDRTPGTEVARGWRDLAERALVAFGGNPLPQGAGVGGGGDGGWWGGVQPLTHGERSMANERCRAPPGGPSEWNAFDTAKLEASQRALAHAVDVLRCQAAXXXXXXXXXXXXXXXXXX--XAAVAVSRLAVSPEGLCVALRACVENGGXXXXVGGAAXXXXRTLGLGVGGGHRADALXXXASNGAAGGSGNAR--LLRGLPYVVEGLLAALLVLVDAGSEEGRSQLAAYRKGLVPTLTELLQDTSRDPFVLRAARTLIGRVS 920 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1479.3473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1479.3473.1 >prot_L-elsbetiae_contig1479.3473.1 ID=prot_L-elsbetiae_contig1479.3473.1|Name=mRNA_L-elsbetiae_contig1479.3473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=757bp MKTALAWSARWNQHTDKLASQAHLCQAWRQVLEVAFVSAGALLFGPREDPback to top mRNA from alignment at L-elsbetiae_contig1479:8071..24643- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1479.3473.1 ID=mRNA_L-elsbetiae_contig1479.3473.1|Name=mRNA_L-elsbetiae_contig1479.3473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=16573bp|location=Sequence derived from alignment at L-elsbetiae_contig1479:8071..24643- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1479:8071..24643- >mRNA_L-elsbetiae_contig1479.3473.1 ID=mRNA_L-elsbetiae_contig1479.3473.1|Name=mRNA_L-elsbetiae_contig1479.3473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4542bp|location=Sequence derived from alignment at L-elsbetiae_contig1479:8071..24643- (Laminarionema elsbetiae ELsaHSoW15)back to top |