mRNA_L-elsbetiae_contig1479.3471.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1479.3471.1
Unique NamemRNA_L-elsbetiae_contig1479.3471.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1479.3471.1 vs. uniprot
Match: D8LI54_ECTSI (USP domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI54_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.870e-38
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:   37 MKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGLKFERLPYLLSLQLKRFDFDYETFQRIKLNDEV 246
            MKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGLKFERLPYLLSLQLKRFDFDY+TFQRIKLN+E+
Sbjct:  273 MKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGLKFERLPYLLSLQLKRFDFDYDTFQRIKLNEEM 342
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BLAST of mRNA_L-elsbetiae_contig1479.3471.1 vs. uniprot
Match: A0A024U1I6_9STRA (USP domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1I6_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.310e-27
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    4 LLAAPSFHLQKMKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGLKFERLPYLLSLQLKRFDFDYETFQRIKLNDEV 246
            L+  P    Q M+SV E++EYFLKPEVL G+NQ+ C  C KK DA+KGLKF +LPYLL+LQLKRFDFDY TF RIKLN+EV
Sbjct:  218 LVIRPFGSTQMMQSVEEAIEYFLKPEVLSGENQWDCSKCAKKQDAIKGLKFSKLPYLLALQLKRFDFDYTTFNRIKLNNEV 298
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BLAST of mRNA_L-elsbetiae_contig1479.3471.1 vs. uniprot
Match: A0A1V9YR23_9STRA (USP domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YR23_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.550e-27
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    4 LLAAPSFHLQKMKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGLKFERLPYLLSLQLKRFDFDYETFQRIKLNDEV 246
            L+  P    Q M+SV E++E+FLKPE+L GDNQ+ C AC  K DAVKGLKF +LPYLLSLQLKRFDFDY TF RIKLN +V
Sbjct:  186 LVIRPFGSSQMMRSVEEAVEFFLKPEMLSGDNQWDCDACKSKQDAVKGLKFAKLPYLLSLQLKRFDFDYATFNRIKLNSQV 266
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BLAST of mRNA_L-elsbetiae_contig1479.3471.1 vs. uniprot
Match: A0A3R7A7E5_9STRA (USP domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7A7E5_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.580e-27
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    4 LLAAPSFHLQKMKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGLKFERLPYLLSLQLKRFDFDYETFQRIKLNDEV 246
            L+  P    + M+SV E++EYFLKPEVL G+NQ+ C  C KK DA+KGLKF +LPYLL+LQLKRFDFDY TF RIKLN+EV
Sbjct:  547 LVIRPFGSTKMMQSVEEAIEYFLKPEVLSGENQWDCSKCAKKQDAIKGLKFSKLPYLLALQLKRFDFDYTTFNRIKLNNEV 627
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BLAST of mRNA_L-elsbetiae_contig1479.3471.1 vs. uniprot
Match: T0PPB4_SAPDV (USP domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PPB4_SAPDV)

HSP 1 Score: 110 bits (275), Expect = 2.150e-26
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    4 LLAAPSFHLQKMKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGLKFERLPYLLSLQLKRFDFDYETFQRIKLNDEV 246
            L+  P    Q M+SV E++E+FLKPE+L GDNQ+ C  C  K DA+KGLKF +LPYLLSLQLKRFDFDY TF RIKLN++V
Sbjct:  199 LVIRPFGSTQMMRSVEEAIEFFLKPEMLSGDNQWDCDKCASKQDAIKGLKFAKLPYLLSLQLKRFDFDYVTFNRIKLNNQV 279
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BLAST of mRNA_L-elsbetiae_contig1479.3471.1 vs. uniprot
Match: A0A485KBA5_9STRA (Aste57867_3392 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBA5_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.940e-26
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    4 LLAAPSFHLQKMKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGLKFERLPYLLSLQLKRFDFDYETFQRIKLNDEV 246
            L+  P    Q MKSV E++EYFLKPE+L G+NQ+ C  C  K DA+KGLKF +LPYLL+LQLKRFDFDY TF RIKLN++V
Sbjct:  218 LVIRPFGSSQMMKSVEEAIEYFLKPEMLSGENQWDCARCAAKQDAIKGLKFSKLPYLLALQLKRFDFDYTTFNRIKLNNQV 298
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BLAST of mRNA_L-elsbetiae_contig1479.3471.1 vs. uniprot
Match: A0A7S2RKP4_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKP4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.000e-26
Identity = 48/72 (66.67%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:   31 QKMKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGLKFERLPYLLSLQLKRFDFDYETFQRIKLNDEV 246
            + M SV +SLE FL+PE LDGDNQY C+A  +K+DA+KG +FE+LPY+L+LQLKRFD DY+TFQR+KLND+V
Sbjct:  214 ETMHSVAQSLESFLRPERLDGDNQYFCEAAGRKLDAIKGFRFEKLPYILTLQLKRFDLDYQTFQRVKLNDQV 285
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BLAST of mRNA_L-elsbetiae_contig1479.3471.1 vs. uniprot
Match: A0A1W0A035_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A035_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.020e-26
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:    4 LLAAPSFHLQKMKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGLKFERLPYLLSLQLKRFDFDYETFQRIKLNDEV 246
            L+  P    Q MKSV E++E+FLKPE L GDNQ+ C  C  K DA+KGLKF +LPYLLSLQLKRFDFDY TF RIKLN++V
Sbjct: 1033 LVIRPFGSNQMMKSVEEAIEFFLKPEKLSGDNQWDCDKCKCKQDAIKGLKFSKLPYLLSLQLKRFDFDYTTFNRIKLNNQV 1113
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BLAST of mRNA_L-elsbetiae_contig1479.3471.1 vs. uniprot
Match: A0A6A5A6Q8_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A6Q8_9STRA)

HSP 1 Score: 107 bits (268), Expect = 7.380e-26
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:   31 QKMKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGLKFERLPYLLSLQLKRFDFDYETFQRIKLNDEV 246
            + MKSV E++EYFLKPE+L G+NQ+ C  C  K DA+KGLKF +LPY+L+LQLKRFDFDY TF RIKLN++V
Sbjct:  142 EMMKSVEEAIEYFLKPEMLSGENQWDCARCGTKQDAIKGLKFSKLPYMLALQLKRFDFDYTTFNRIKLNNQV 213
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BLAST of mRNA_L-elsbetiae_contig1479.3471.1 vs. uniprot
Match: W4GK16_9STRA (Ubiquitin carboxyl-terminal hydrolase 47 n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GK16_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.900e-25
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:   31 QKMKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGLKFERLPYLLSLQLKRFDFDYETFQRIKLNDEV 246
            + MKSV E++EYFLKPE+L G+NQ+ C  C  K DA+KGLKF +LPY+L+LQLKRFDFDY TF RIKLN++V
Sbjct:  229 EMMKSVEEAIEYFLKPEMLSGENQWDCARCGTKQDAIKGLKFSKLPYMLALQLKRFDFDYTTFNRIKLNNQV 300
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1479.3471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI54_ECTSI2.870e-3895.71USP domain-containing protein (Fragment) n=2 Tax=E... [more]
A0A024U1I6_9STRA1.310e-2766.67USP domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A1V9YR23_9STRA4.550e-2766.67USP domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A3R7A7E5_9STRA4.580e-2765.43USP domain-containing protein n=1 Tax=Aphanomyces ... [more]
T0PPB4_SAPDV2.150e-2664.20USP domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A485KBA5_9STRA2.940e-2664.20Aste57867_3392 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S2RKP4_9STRA4.000e-2666.67Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A1W0A035_9STRA4.020e-2665.43Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A6A5A6Q8_9STRA7.380e-2666.67USP domain-containing protein (Fragment) n=1 Tax=A... [more]
W4GK16_9STRA1.900e-2566.67Ubiquitin carboxyl-terminal hydrolase 47 n=13 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1479contigL-elsbetiae_contig1479:173..418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue1e-32
Seed eggNOG ortholog2880.D8LI54
Preferred nameUSP47
KEGG koko:K11857
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000578,GO:0001558,GO:0001654,GO:0001745,GO:0003002,GO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006355,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007346,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008595,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009790,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009895,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010389,GO:0010466,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010948,GO:0010951,GO:0010972,GO:0016579,GO:0016787,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019904,GO:0023051,GO:0023056,GO:0023057,GO:0030111,GO:0030154,GO:0030162,GO:0030177,GO:0030307,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031330,GO:0031461,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034644,GO:0035282,GO:0035520,GO:0036211,GO:0036459,GO:0040008,GO:0042176,GO:0042177,GO:0042221,GO:0042493,GO:0042675,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045786,GO:0045861,GO:0045892,GO:0045927,GO:0045930,GO:0045934,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0051716,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060548,GO:0060828,GO:0060968,GO:0061136,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071987,GO:0080090,GO:0080134,GO:0080135,GO:0090263,GO:0090304,GO:0090596,GO:0101005,GO:0104004,GO:0140096,GO:1901360,GO:1901564,GO:1901799,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902229,GO:1902230,GO:1902275,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1902749,GO:1902750,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903507,GO:1990234,GO:2000058,GO:2000059,GO:2000112,GO:2000113,GO:2000116,GO:2000117,GO:2001020,GO:2001021,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsCOG5077@1,KOG4598@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons1
Model size246
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.973689-CDS-L-elsbetiae_contig1479:172..4181622815595.973689-CDS-L-elsbetiae_contig1479:172..418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1479 173..418 +
1691682980.8342927-CDS-L-elsbetiae_contig1479:172..4181691682980.8342927-CDS-L-elsbetiae_contig1479:172..418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1479 173..418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1479.3471.1prot_L-elsbetiae_contig1479.3471.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1479 173..418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1479.3471.1

>prot_L-elsbetiae_contig1479.3471.1 ID=prot_L-elsbetiae_contig1479.3471.1|Name=mRNA_L-elsbetiae_contig1479.3471.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
MLLAAPSFHLQKMKSVPESLEYFLKPEVLDGDNQYCCQACDKKVDAVKGL
KFERLPYLLSLQLKRFDFDYETFQRIKLNDEV
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mRNA from alignment at L-elsbetiae_contig1479:173..418+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1479.3471.1 ID=mRNA_L-elsbetiae_contig1479.3471.1|Name=mRNA_L-elsbetiae_contig1479.3471.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=246bp|location=Sequence derived from alignment at L-elsbetiae_contig1479:173..418+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTTGCTGCGCCGTCTTTTCATCTGCAGAAGATGAAGTCTGTTCC
GGAGTCCCTGGAGTATTTCCTCAAGCCCGAGGTTCTCGACGGCGACAACC
AGTACTGCTGCCAGGCGTGTGACAAGAAGGTGGACGCCGTAAAAGGCCTC
AAGTTCGAGAGACTGCCGTACCTGCTGTCGCTGCAGCTCAAGCGCTTCGA
CTTCGACTACGAGACCTTCCAGAGGATCAAGCTCAATGACGAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1479:173..418+

>mRNA_L-elsbetiae_contig1479.3471.1 ID=mRNA_L-elsbetiae_contig1479.3471.1|Name=mRNA_L-elsbetiae_contig1479.3471.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig1479:173..418+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTTGCTGCGCCGTCTTTTCATCTGCAGAAGATGAAGTCTGTTCC
GGAGTCCCTGGAGTATTTCCTCAAGCCCGAGGTTCTCGACGGCGACAACC
AGTACTGCTGCCAGGCGTGTGACAAGAAGGTGGACGCCGTAAAAGGCCTC
AAGTTCGAGAGACTGCCGTACCTGCTGTCGCTGCAGCTCAAGCGCTTCGA
CTTCGACTACGAGACCTTCCAGAGGATCAAGCTCAATGACGAGGTGATGC
TGCTTGCTGCGCCGTCTTTTCATCTGCAGAAGATGAAGTCTGTTCCGGAG
TCCCTGGAGTATTTCCTCAAGCCCGAGGTTCTCGACGGCGACAACCAGTA
CTGCTGCCAGGCGTGTGACAAGAAGGTGGACGCCGTAAAAGGCCTCAAGT
TCGAGAGACTGCCGTACCTGCTGTCGCTGCAGCTCAAGCGCTTCGACTTC
GACTACGAGACCTTCCAGAGGATCAAGCTCAATGACGAGGTG
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