mRNA_L-elsbetiae_contig1030.347.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1030.347.1
Unique NamemRNA_L-elsbetiae_contig1030.347.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1030.347.1 vs. uniprot
Match: D7FYY0_ECTSI (Acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY0_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.890e-43
Identity = 69/86 (80.23%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:    1 MITTAAREGKKKITPYMPQEGVGGMVYHGFVVCLVSLTVNYLVIPFQVLGLEESLDVWGTFYFGIHALVVGLYVVCLVIPTKKVSN 258
            MITTAAREGKKKI+PYMPQEG  GM YHG  V LV+LTVNYLVIPFQ+LGL ESLDVWGTF FGIHALVVGLY+VC +IPTKK  +
Sbjct:    1 MITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHALVVGLYLVCQMIPTKKAQS 86
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BLAST of mRNA_L-elsbetiae_contig1030.347.1 vs. uniprot
Match: A0A6H5JJU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU3_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.920e-38
Identity = 68/86 (79.07%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 MITTAAREGKKKITPYMPQEGVGGMVYHGFVVCLVSLTVNYLVIPFQVLGLEESLDVWGTFYFGIHALVVGLYVVCLVIPTKKVSN 258
            MITTAAREGKKKI+PYMPQEG  GM YHG  V LV+LTVNYLVIPFQ+LGL ESLDVWGTF FGIHALV+ LY+VC VIPTKK  +
Sbjct:  418 MITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHALVIALYLVCQVIPTKKAQS 503
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1030.347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYY0_ECTSI2.890e-4380.23Acyltransferase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JJU3_9PHAE1.920e-3879.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1030contigL-elsbetiae_contig1030:1154..2249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionacyltransferase
Ec32 orthologEc-19_002900.1
Exons2
Model size264
Cds size264
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815259.378201-CDS-L-elsbetiae_contig1030:1153..12941622815259.378201-CDS-L-elsbetiae_contig1030:1153..1294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1030 1154..1294 +
1691682801.756201-CDS-L-elsbetiae_contig1030:1153..12941691682801.756201-CDS-L-elsbetiae_contig1030:1153..1294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1030 1154..1294 +
1622815259.387868-CDS-L-elsbetiae_contig1030:2126..22491622815259.387868-CDS-L-elsbetiae_contig1030:2126..2249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1030 2127..2249 +
1691682801.7659652-CDS-L-elsbetiae_contig1030:2126..22491691682801.7659652-CDS-L-elsbetiae_contig1030:2126..2249Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1030 2127..2249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1030.347.1prot_L-elsbetiae_contig1030.347.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1030 1154..2249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1030.347.1

>prot_L-elsbetiae_contig1030.347.1 ID=prot_L-elsbetiae_contig1030.347.1|Name=mRNA_L-elsbetiae_contig1030.347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
MITTAAREGKKKITPYMPQEGVGGMVYHGFVVCLVSLTVNYLVIPFQVLG
LEESLDVWGTFYFGIHALVVGLYVVCLVIPTKKVSNP*
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mRNA from alignment at L-elsbetiae_contig1030:1154..2249+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1030.347.1 ID=mRNA_L-elsbetiae_contig1030.347.1|Name=mRNA_L-elsbetiae_contig1030.347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1096bp|location=Sequence derived from alignment at L-elsbetiae_contig1030:1154..2249+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCACCACGGCAGCGCGCGAGGGCAAGAAGAAGATCACCCCGTACAT
GCCCCAGGAGGGAGTCGGCGGCATGGTGTACCACGGGTTCGTCGTCTGTT
TGGTCTCCCTCACCGTCAACTATCTCGTCATCCCGTTCCAGGTGCGAGAG
TGACGGGTGTGTGGTGTGTGGTGTGTGGTGTGAACTTTCGGGCACGTACT
TGGAGGTTTAATGGCTCGCGGAAAAATCATCACATGGTATGTACAAATTG
CGGAGAACCAAGAGCCTTTTGAGGCCCTCTTTTCGTCTCGGTTGATTTCG
TCTTCATGCTTCATGCGCCCTTGTGTTTTATCTATTTTCTCTGAACTGGT
TTTGTCTCGCGTTCAGAGGATCGCCGTGCGTTCGAGGCTTAGCGGACATA
GCCTGGAGCAGGCTCGGTGTACCCTTCAATATCAACACCAACGTCGCAAC
TCTTGTGCACCGGCATGTACAGAGTATCACAGGCAGGCAGGCAGGCTGTG
CAGTGCAGCGGGTCGATAAACGGCTCAATTGGCGGCCCTCCTGCTGTATT
CGATACCAGAGACGCTCTTCTCAGCGCAGCCTTTGTCCTGTCCTGGTTGG
TGCTCGGTGTTAATTTTACTCCGAATTATGTATTGCTCCGTTTCAACAAA
TGGTGAACGTTGCCTTCTCTCGACCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCC
CCCCTCCCCCCCCCCCANNNNNNNGTGGTTGGTGTTTTTTTTTTCCCCAT
TTTTTTTTTTCGCCTTTTTAAAAAAGGGGGGAGTTTGCCCTCTCCCCCCC
CCCCCCCCCCCCCCCCCCCGCGCCCCTTTCCCTTTCGACGCCACCCATCT
TGTCGGTGTTTTACGACGCTGTGCTTTTCCACACTGCCGTTTGGCGGGTC
CCATGTGCGCAACGCCTTTTCAGGTGCTCGGCCTGGAAGAGTCGCTGGAT
GTATGGGGCACCTTCTACTTTGGCATCCACGCGCTCGTGGTTGGCCTCTA
CGTGGTCTGCCTGGTCATCCCCACCAAAAAGGTAAGCAACCCCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1030:1154..2249+

>mRNA_L-elsbetiae_contig1030.347.1 ID=mRNA_L-elsbetiae_contig1030.347.1|Name=mRNA_L-elsbetiae_contig1030.347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig1030:1154..2249+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCACCACGGCAGCGCGCGAGGGCAAGAAGAAGATCACCCCGTACAT
GCCCCAGGAGGGAGTCGGCGGCATGGTGTACCACGGGTTCGTCGTCTGTT
TGGTCTCCCTCACCGTCAACTATCTCGTCATCCCGTTCCAGATGATCACC
ACGGCAGCGCGCGAGGGCAAGAAGAAGATCACCCCGTACATGCCCCAGGA
GGGAGTCGGCGGCATGGTGTACCACGGGTTCGTCGTCTGTTTGGTCTCCC
TCACCGTCAACTATCTCGTCATCCCGTTCCAGGTGCTCGGCCTGGAAGAG
TCGCTGGATGTATGGGGCACCTTCTACTTTGGCATCCACGCGCTCGTGGT
TGGCCTCTACGTGGTCTGCCTGGTCATCCCCACCAAAAAGGTAAGCAACC
CCTGAGTGCTCGGCCTGGAAGAGTCGCTGGATGTATGGGGCACCTTCTAC
TTTGGCATCCACGCGCTCGTGGTTGGCCTCTACGTGGTCTGCCTGGTCAT
CCCCACCAAAAAGGTAAGCAACCCCTGA
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