mRNA_L-elsbetiae_contig14753.3454.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14753.3454.1
Unique NamemRNA_L-elsbetiae_contig14753.3454.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14753.3454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14753contigL-elsbetiae_contig14753:792..3962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size295
Cds size294
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14753.3454.1prot_L-elsbetiae_contig14753.3454.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14753 792..3962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.2929351-CDS-L-elsbetiae_contig14753:791..8461622815594.2929351-CDS-L-elsbetiae_contig14753:791..846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14753 792..846 -
1691682979.8323872-CDS-L-elsbetiae_contig14753:791..8461691682979.8323872-CDS-L-elsbetiae_contig14753:791..846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14753 792..846 -
1622815594.305428-CDS-L-elsbetiae_contig14753:1140..11971622815594.305428-CDS-L-elsbetiae_contig14753:1140..1197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14753 1141..1197 -
1691682979.842161-CDS-L-elsbetiae_contig14753:1140..11971691682979.842161-CDS-L-elsbetiae_contig14753:1140..1197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14753 1141..1197 -
1622815594.3186028-CDS-L-elsbetiae_contig14753:1388..14601622815594.3186028-CDS-L-elsbetiae_contig14753:1388..1460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14753 1389..1460 -
1691682979.8516479-CDS-L-elsbetiae_contig14753:1388..14601691682979.8516479-CDS-L-elsbetiae_contig14753:1388..1460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14753 1389..1460 -
1622815594.332399-CDS-L-elsbetiae_contig14753:2976..30481622815594.332399-CDS-L-elsbetiae_contig14753:2976..3048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14753 2977..3048 -
1691682979.861412-CDS-L-elsbetiae_contig14753:2976..30481691682979.861412-CDS-L-elsbetiae_contig14753:2976..3048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14753 2977..3048 -
1622815594.3425658-CDS-L-elsbetiae_contig14753:3924..39621622815594.3425658-CDS-L-elsbetiae_contig14753:3924..3962Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14753 3925..3962 -
1691682979.8781383-CDS-L-elsbetiae_contig14753:3924..39621691682979.8781383-CDS-L-elsbetiae_contig14753:3924..3962Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14753 3925..3962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14753.3454.1

>prot_L-elsbetiae_contig14753.3454.1 ID=prot_L-elsbetiae_contig14753.3454.1|Name=mRNA_L-elsbetiae_contig14753.3454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
EEIFSKPVNIHTLDLASNWLNELPAGLFDTLTKLEKLNLMKNDLEKLPDG
IFQTLTSLKNLWLTNNRELECIPPVPSTATRVSADRGVDTCGEWFKP*
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mRNA from alignment at L-elsbetiae_contig14753:792..3962-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14753.3454.1 ID=mRNA_L-elsbetiae_contig14753.3454.1|Name=mRNA_L-elsbetiae_contig14753.3454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3171bp|location=Sequence derived from alignment at L-elsbetiae_contig14753:792..3962- (Laminarionema elsbetiae ELsaHSoW15)
GAAGAGATATTCTCCAAGCCTGTCAACATACACACTCTGTGAGTGCCCCC
CTTCGGTCGCTGTGTACATGGCTTGGGAGGACAATGGTAGAAACGTCGCA
AAAAAACATTTCTGCTAGACTCCGGAATCGCGATAAAGCAAGCAAGCTGA
ACATCCGACCTGTGAAGTTTGGAAGGTTGGCGACAGCACGTGCAGAATAT
TATGGCTGGCCTACGCCTTACTGGAACCCGGGATCATATTGATTGGAGAG
CTCGGATTACGTAGCTGGTACTTGCCGCACTTGTTTGAAGATCATGTGTG
CATCTGTGGGCCCCTTCTTTCGCCGAGCATGTGACATTTTATGCTATCCT
CAGCCGTAGTCTTCGGTTGCATCACCTTGCGATAACGGTGTAGCTGGAGC
GCAGTCATCTTCGATGATCTCACTCCCTGGAAACGTTAGCATGTGACTTG
ACGACCGCGGCGGGGGCGCGGTTGCGGTTGGTCCAAGACGTTTCCGGCGG
AAGTTGTTTTCAATGGGTGAAGGTAATGCTTTCGATGGGCGAAGGTAATG
CGCCGGGTCCGGTCCTTGGTTCTATGCATCGTTGGTTCGGGGCTTAAGCC
TTAACACATGGGCCTTCGACGCGCACCACGGTGAAAACGAAACCTATCGA
AAGTGGTGACGTTGTTCTCAGGACCGTTGCCAGTGACCCCATCCAATCAT
CTGACCCTCAGAGACAGCGTGCTGGCAACTTTTGCCGTCGCTACGGTCGG
TATCTATGGGTGGTGGAGCTCTGGACCGATACATCATTAGATATGTTGCT
TCCGCAAGGTCCTACCAACTTGGGGCTATCGAGGCTCGCAGGCTATCATG
CCCATGAAAACTGGGCGACAATGTTTCTTCTGACGATCTTGCTCGGCTGT
CGACAATCCCACAGGGATCTGGCCAGCAACTGGCTAAATGAGCTGCCTGC
CGGGCTATTTGATACTCTCACCAAGCTGGAAAAGCTGTAAGTCAACCCCT
TCGATTTCGAACCCTGTGTGGCCCCATATCTTGGGGTTGAAATCATCACG
CCTACGCACCCGCGAGACTATGTTACTGTCACTCCGGCGCAACTGCCTAC
CGTTTGTTGGTTTCTTACATTCGCCAAACAGCTAGCGGCTAGCCTGTGAA
GATTAAAGCTTGCCGTAAGTTGATGGACGACGCACGCATAGAACAGTAGT
TCGTCTATTGGGCAAGTTTGTTGAAGCGGCAGGCACAACAAGGTGTTGAC
GGTTCTTTAGGGTACGCGGAGATGTATCAGCATCCAGGAGTTGGTCAGCT
TTAGGAGCGGCCAATAAATCGAGTCTTTTCCCGCCCACCCACCCCTTTCT
TTCGAAGGTGGGGGGAGGAAGAGGAGACCCGACAGTAGCTAGAAACGAGT
TCTAGTTGGCGTAGGAGATGGTAGGATACCATTTGGAGACTTGGTCGACC
GAGCCTACTGTTTGCAGTACATAAGACTAGTTCCCTTCACCGGAGGATAG
GGAATGTTGGGTTGTTGCTACCGGGGGATAGAGAACCCTCGGTTGGTTGG
TGTTACGGAAGGAAGAGGTAGTGTTTAAGCAGAGAGGCAGAGACACGGTC
CAGTCGGCGCAGAAATATATCTGCGGGAACGTGGCTCTGCCGGCTGGTAT
TTTCCTCTTCCCTCGGGGGTCTCGGAAAATAGTTAAGGCAACTCGAAAGA
AAACAAAACAATAAATGCCTACTTATTATTTATGTACATTGACTTGGAGT
TGAATCTACCATGGTCGATCGACTGTTGAAGCTAACACACGATAATCGAT
GGAAGATGGTTTCCCCGCCCTGGTGAGGTGTTCTGGAGATAGGTTGGAGT
GCTGGCCTCGTCTGTCCCCCCGCCTGAGTACACGGCATTGTGTGCTGTCT
CCGGTTCTCTTCGGTTGCACAACAATTTTCTAATATGGTGTAGCTGGGTA
CAGTCATCTTGTGGATCTCACACACCAGACATTCCAGCACGCATGCATGC
GACATGAAGACCACGTCGGTATTGGGCGGGGTGGCGGGTATCTCACGTCT
TGTGGAAGGTATCCTGACCTGCTAGAGGGTGACGCCGAGGATGATGAATT
GTGCCGGATCTCTGGTTCCGTGCATCGTTGATTTTGGAGCCTGATCCTAT
TGCAGCCCTCCATCTCTGAGACGTAACACCGTGCGGACGAATAGCAGGCA
GGCCTCCCGAGTGTGGTAACGTTGCTCGCCGAACCGTTGCTCGTAACCCC
AGCCCGTCAACTCACCTGAAGAGTGAACATACATGGCTATCGGTTTTATG
GTACTCGATGGAATGTATTCGTCGAAGCCACTCACACGACCATCAAAATA
TGGCATTTTTCCCGCTTGCTGGAAGATGATGTCAACGTGTCCAAACGTTG
CCATCGCGGGTTATGTAGCGTGCCCGTCGAAAATTCGGTAACACATTTTA
TTTTACCGCCCATCTCCGGCATGCATGTATCATCCCCCCGATAACCCCAC
AGTAACCTGATGAAGAACGACCTGGAGAAGCTGCCTGACGGGATTTTCCA
AACTCTCACCTCGCTCAAGAACCTGTAAGTCCACCTGCGGGATTCCTGTG
TGAGTGTAGCTATCTGACACAAGGAACATCCATTAAATATAAGCCGTCAA
AGCCGAATTGGTTGGTTCCATGCCTCCCGTCACCGACGTCTCTGTTCGTT
TGTGTTGGTTTCTCTTTCCCTCTAACTGCGACCGCATTCATTCTTCGACG
CTGGCTGTACTTCAGGTGGCTGACGAACAACCGAGAGCTGGAGTGCATCC
CACCCGTGCCGTCGACCGCTACGTGAGGATGGTTTGAACTCCTTCCCATG
AGAGTGATGTCGGAACATCGACAGAGAATACACGAAACTATACTGCTGCA
CAGTAACCTCACGCGCCATGTATCGAGCTGATCGAGGAACTGTATCGTGC
TGCTCCCGCGTTTGTCACGGCCATGCAGTTACGCCCCGCCCGTGCGTTTC
GGCCTGAACGCGCCGGGTCGTCGTAAGCCTCTTTCGTGCACCGTCAGACA
ATGTAACTGCGCTGCCTCACCTTCTCCCTCGTTGCGCTCCTTGTCTTGAA
TCTGTACGTGTGGCAGTCGAGTCTCCGCCGATCGCGGTGTCGACACATGT
GGTGAGTGGTTCAAACCGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14753:792..3962-

>mRNA_L-elsbetiae_contig14753.3454.1 ID=mRNA_L-elsbetiae_contig14753.3454.1|Name=mRNA_L-elsbetiae_contig14753.3454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig14753:792..3962- (Laminarionema elsbetiae ELsaHSoW15)
GAAGAGATATTCTCCAAGCCTGTCAACATACACACTCTGAAGAGATATTC
TCCAAGCCTGTCAACATACACACTCTGGATCTGGCCAGCAACTGGCTAAA
TGAGCTGCCTGCCGGGCTATTTGATACTCTCACCAAGCTGGAAAAGCTGG
ATCTGGCCAGCAACTGGCTAAATGAGCTGCCTGCCGGGCTATTTGATACT
CTCACCAAGCTGGAAAAGCTTAACCTGATGAAGAACGACCTGGAGAAGCT
GCCTGACGGGATTTTCCAAACTCTCACCTCGCTCAAGAACCTTAACCTGA
TGAAGAACGACCTGGAGAAGCTGCCTGACGGGATTTTCCAAACTCTCACC
TCGCTCAAGAACCTGTGGCTGACGAACAACCGAGAGCTGGAGTGCATCCC
ACCCGTGCCGTCGACCGCTACGTGGCTGACGAACAACCGAGAGCTGGAGT
GCATCCCACCCGTGCCGTCGACCGCTACTCGAGTCTCCGCCGATCGCGGT
GTCGACACATGTGGTGAGTGGTTCAAACCGTAGTCGAGTCTCCGCCGATC
GCGGTGTCGACACATGTGGTGAGTGGTTCAAACCGTAG
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