mRNA_L-elsbetiae_contig14733.3444.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14733.3444.1
Unique NamemRNA_L-elsbetiae_contig14733.3444.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14733.3444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14733contigL-elsbetiae_contig14733:1640..2281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size642
Cds size498
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.261428-CDS-L-elsbetiae_contig14733:1639..21371622815593.261428-CDS-L-elsbetiae_contig14733:1639..2137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14733 1640..2137 +
1691682979.1895602-CDS-L-elsbetiae_contig14733:1639..21371691682979.1895602-CDS-L-elsbetiae_contig14733:1639..2137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14733 1640..2137 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.2788281-UTR-L-elsbetiae_contig14733:2137..22811622815593.2788281-UTR-L-elsbetiae_contig14733:2137..2281Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14733 2138..2281 +
1691682979.2025797-UTR-L-elsbetiae_contig14733:2137..22811691682979.2025797-UTR-L-elsbetiae_contig14733:2137..2281Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14733 2138..2281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14733.3444.1prot_L-elsbetiae_contig14733.3444.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14733 1640..2137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14733.3444.1

>prot_L-elsbetiae_contig14733.3444.1 ID=prot_L-elsbetiae_contig14733.3444.1|Name=mRNA_L-elsbetiae_contig14733.3444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
LAFCRGDHRWRPRLGGLTGRRAAARAAVACTSPPDCCDVIVRGAAVVAGR
GGSAGFAQGVAADAGPEELLCCCRLARCSWWWCYMYCCCGMPRGVRDHAV
PAAGFDCGVGQADRHDGYACESQSARRMGHFLSSFLCTPHSLQADKLGGR
LGPVVVGELRQENAA*
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mRNA from alignment at L-elsbetiae_contig14733:1640..2281+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14733.3444.1 ID=mRNA_L-elsbetiae_contig14733.3444.1|Name=mRNA_L-elsbetiae_contig14733.3444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig14733:1640..2281+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCCTTTTGCCGCGGCGACCATCGATGGCGACCCCGGCTTGGAGGACT
TACGGGCAGACGAGCGGCTGCTCGTGCTGCGGTCGCTTGCACCTCCCCCC
CTGACTGTTGCGATGTAATCGTGAGAGGTGCTGCGGTCGTGGCAGGTCGA
GGCGGCTCTGCAGGTTTCGCCCAGGGTGTTGCTGCTGATGCTGGTCCAGA
GGAGCTGCTGTGCTGCTGCCGGTTGGCCCGGTGCTCCTGGTGGTGGTGCT
ACATGTACTGCTGCTGCGGGATGCCACGTGGGGTTCGGGATCATGCGGTT
CCTGCTGCTGGCTTCGACTGCGGTGTCGGCCAGGCCGACCGTCATGACGG
CTACGCATGCGAGAGCCAGAGTGCTCGGAGAATGGGCCATTTTCTCTCCT
CCTTCCTATGTACGCCTCACAGCTTACAAGCGGACAAGCTGGGGGGACGT
CTCGGCCCCGTCGTGGTCGGCGAACTCCGGCAAGAAAATGCGGCGTGACC
AGACCGGCCGGGTGTGTATTTCGATGTTCGATCCCGACGCTTGTTGCCCA
TAAGAAGAGCAATGCAGCAGGATGATCCTGGAATTCTTCGAGACAACGAG
CGGCCTCTGCGGAAGGGGTCAAACAAGAACTGTCGACATGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14733:1640..2281+

>mRNA_L-elsbetiae_contig14733.3444.1 ID=mRNA_L-elsbetiae_contig14733.3444.1|Name=mRNA_L-elsbetiae_contig14733.3444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig14733:1640..2281+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCCTTTTGCCGCGGCGACCATCGATGGCGACCCCGGCTTGGAGGACT
TACGGGCAGACGAGCGGCTGCTCGTGCTGCGGTCGCTTGCACCTCCCCCC
CTGACTGTTGCGATGTAATCGTGAGAGGTGCTGCGGTCGTGGCAGGTCGA
GGCGGCTCTGCAGGTTTCGCCCAGGGTGTTGCTGCTGATGCTGGTCCAGA
GGAGCTGCTGTGCTGCTGCCGGTTGGCCCGGTGCTCCTGGTGGTGGTGCT
ACATGTACTGCTGCTGCGGGATGCCACGTGGGGTTCGGGATCATGCGGTT
CCTGCTGCTGGCTTCGACTGCGGTGTCGGCCAGGCCGACCGTCATGACGG
CTACGCATGCGAGAGCCAGAGTGCTCGGAGAATGGGCCATTTTCTCTCCT
CCTTCCTATGTACGCCTCACAGCTTACAAGCGGACAAGCTGGGGGGACGT
CTCGGCCCCGTCGTGGTCGGCGAACTCCGGCAAGAAAATGCGGCGTGACT
CGCCTTTTGCCGCGGCGACCATCGATGGCGACCCCGGCTTGGAGGACTTA
CGGGCAGACGAGCGGCTGCTCGTGCTGCGGTCGCTTGCACCTCCCCCCCT
GACTGTTGCGATGTAATCGTGAGAGGTGCTGCGGTCGTGGCAGGTCGAGG
CGGCTCTGCAGGTTTCGCCCAGGGTGTTGCTGCTGATGCTGGTCCAGAGG
AGCTGCTGTGCTGCTGCCGGTTGGCCCGGTGCTCCTGGTGGTGGTGCTAC
ATGTACTGCTGCTGCGGGATGCCACGTGGGGTTCGGGATCATGCGGTTCC
TGCTGCTGGCTTCGACTGCGGTGTCGGCCAGGCCGACCGTCATGACGGCT
ACGCATGCGAGAGCCAGAGTGCTCGGAGAATGGGCCATTTTCTCTCCTCC
TTCCTATGTACGCCTCACAGCTTACAAGCGGACAAGCTGGGGGGACGTCT
CGGCCCCGTCGTGGTCGGCGAACTCCGGCAAGAAAATGCGGCGTGA
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