mRNA_L-elsbetiae_contig1473.3440.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1473.3440.1
Unique NamemRNA_L-elsbetiae_contig1473.3440.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1473.3440.1 vs. uniprot
Match: A0A0C7MLW4_9SACH (LALA0S02e00518g1_1 n=4 Tax=Lachancea TaxID=300275 RepID=A0A0C7MLW4_9SACH)

HSP 1 Score: 57.4 bits (137), Expect = 9.100e-7
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:  376 SAESRLAQEKTWLADALPQYCHAEPIRGSD-FVWSFRVAGMHRTLYQEIGKVSFRAHFPRDYPRTPPTLLLTEELIHPNWQFPARGLQVPHLTKEGWDPSM 675
            +A+ RL +E T L    PQ   A PI   + FVW   ++G   + Y E G  + R  FPRDYP +PP LL T  ++HPN  +P   + +  L   G DP+M
Sbjct:    4 TAQKRLFKELTQLIKDSPQGIVAGPITEDNLFVWDCLISGPPDSPY-EGGVFNARLEFPRDYPLSPPKLLFTPSILHPNI-YPNGEVCISILHSPGDDPNM 102
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1473.3440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0C7MLW4_9SACH9.100e-738.61LALA0S02e00518g1_1 n=4 Tax=Lachancea TaxID=300275 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1473contigL-elsbetiae_contig1473:14490..18513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score60.8
Seed ortholog evalue9.3e-07
Seed eggNOG ortholog30611.ENSOGAP00000011526
Preferred nameUBE2D3
KEGG koko:K06689
KEGG Pathwayko04013,ko04120,ko04141,ko04624,map04013,map04120,map04141,map04624
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0070647,GO:0070936,GO:0070979,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein K11-linked ubiquitination
EggNOG OGs35BNI@314146,38B6R@33154,3BBRF@33208,3CUBW@33213,3JAW2@40674,481RP@7711,48W06@7742,4M92T@9443,COG5078@1,KOG0417@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelPrimates
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size687
Cds size687
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.0242295-CDS-L-elsbetiae_contig1473:14489..150021622815593.0242295-CDS-L-elsbetiae_contig1473:14489..15002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1473 14490..15002 +
1691682979.0765057-CDS-L-elsbetiae_contig1473:14489..150021691682979.0765057-CDS-L-elsbetiae_contig1473:14489..15002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1473 14490..15002 +
1622815593.0389698-CDS-L-elsbetiae_contig1473:18339..185131622815593.0389698-CDS-L-elsbetiae_contig1473:18339..18513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1473 18340..18513 +
1691682979.0891228-CDS-L-elsbetiae_contig1473:18339..185131691682979.0891228-CDS-L-elsbetiae_contig1473:18339..18513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1473 18340..18513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1473.3440.1prot_L-elsbetiae_contig1473.3440.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1473 14490..18513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1473.3440.1

>prot_L-elsbetiae_contig1473.3440.1 ID=prot_L-elsbetiae_contig1473.3440.1|Name=mRNA_L-elsbetiae_contig1473.3440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=229bp
IPGANPPAAVERERGERGTRERGTRERGTREKGDRGEVIRSSVSSLPPHS
GAVMAQPRGSGAVERNNSSRTEHDVAASGRGEPRRAYSGRGVDAPSAAEG
SRRSAPGGGAVAAALATPALSPRFLSAESRLAQEKTWLADALPQYCHAEP
IRGSDFVWSFRVAGMHRTLYQEIGKVSFRAHFPRDYPRTPPTLLLTEELI
HPNWQFPARGLQVPHLTKEGWDPSMTISK
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mRNA from alignment at L-elsbetiae_contig1473:14490..18513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1473.3440.1 ID=mRNA_L-elsbetiae_contig1473.3440.1|Name=mRNA_L-elsbetiae_contig1473.3440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4024bp|location=Sequence derived from alignment at L-elsbetiae_contig1473:14490..18513+ (Laminarionema elsbetiae ELsaHSoW15)
ATCCCCGGAGCCAACCCACCCGCCGCGGTCGAGAGAGAGAGAGGAGAGAG
AGGGACCAGAGAGAGAGGGACCAGAGAGAGAGGGACCAGAGAGAAAGGGG
ATCGAGGGGAAGTCATCCGCAGCAGCGTCTCTTCTCTGCCGCCCCACTCG
GGTGCCGTGATGGCACAACCCAGAGGCAGCGGTGCTGTTGAAAGGAATAA
TTCGAGCAGGACGGAGCATGATGTTGCAGCATCAGGAAGAGGAGAACCGA
GAAGAGCATACAGCGGCAGAGGAGTGGACGCCCCGTCCGCGGCCGAAGGA
TCGAGGAGGTCCGCTCCGGGAGGGGGAGCGGTGGCGGCGGCGCTGGCGAC
GCCGGCGCTGAGCCCGCGGTTTCTGTCGGCCGAGTCGCGGCTAGCCCAGG
AGAAGACTTGGCTGGCGGACGCGCTGCCGCAGTACTGCCACGCAGAGCCC
ATCAGAGGGTCGGATTTCGTGTGGTCATTCAGGGTCGCTGGGATGCACAG
GACCCTGTACCAGGTGCGACCCTAACCTAGCTCAATGCCTATCGTGTGCT
GTCAATTGTTCATGATTTTCTTGCTATATATATTATATCGTGGTACTCCC
CTCCAAAAGAAGAGGGAAGAGGTGCGTGATGAATAACCCGTTAGGCGCGT
CTAGGTATCCTGCATACACTTGCACATAAATACTCGGTTCTTTGAATTTG
TGTGTGTTTACATACATGGCTTGGTGTATTTCTTGTGTACATACATCACA
AAGCAAACCGCTCTCGCATCTGACGTCTCCGCTTAATATATAGACCGATC
CGATTTGTGCAGACTACTGCTGTTGCTGTATCTAGAGATGTGTATCGAAT
AAATTGGACGAGAACACACACACACACACACACACTCAGGTGCGGACCCT
GGGGTGCGGGCGATGATGACACCTCAGCTGCAGCGCAAAATCTGTTTCGG
ACGCAACATGTATCCTCTGCGACGCGCAAGAGAAACTCGCCACACAGGGA
CAACAGTAGCACACAGCATACACGCCCCTTCAAAGAAGCAGACATATTGA
AGTAGCATCGCCCGATCCCTCTTGATGATGAGGCACAATGACTCGCCGGG
GGCGGGGGCGCTAATGAGGTGCGGGAAAACGAACGGTATCACTTGAACCC
GACACGGAGCCCTCCTGCCTCCGGCATTGTAGCGGGTGTGCGGAAGCCTT
CGGCTGTCCATACATAGCTTTCTTTTTGCCCCGGGGTTTTATACATCTGT
ATGTTTTTTATTTCTGTCCACCCTAGGGTCAGACGTGTACATACCTGCTG
TGTTTCTAATGCCAGCGAGACGCAAGACCCCTCCGGGATTCACTTTAGGG
TTTGGCCTGGCGCAGCAGATCTACCTAGTCATGTTTTGTTGTTTTGTTGA
GCGGCGTCGAGTGCCCTGTTTTGGTGACCACGCCCCCCGGATGTTTTTGG
ACTATTTATGCATTTCGAGAGCTTATGTGAGAAACAACAGCACCAAACGT
ATATACATAACTACCAATGTACTGTGAAAAGATATGGATATCCACTCGGG
TTGCTGGGGGCTCCGTGCAATTTCAAAGTAGTCACAAGGGTCTACGCAGA
CGGACCTTTTTTCTCTTCAGCCGCAGCAATTTTTTTTTGCCGAGCTCACA
GCAGAGTTACCACCTTTGCACACGATGATACTCTTCACACAAGTCGCAGC
TTGCTGTAAAAATTTCAGGAGGCCTCACGTATGTCATGTTTTACGTCGGC
GTGGAGTTTTTATACCTTAGTTTTGCCCTGAATTCGAGGAATGCTGCGTC
GTCACGGCTAGAAGATGCCAGGTTGCAGCTTCTTTTTTGGCTCATTTTCT
TGCCTCCGACGGCGAACTTCACACGCTTGTGTGGGCCATCAAAGAAGTTC
GCGAAATCACTCGGTACTTCGGCACAGTGGAGGAATGCACACAAAGATGA
CAGGCAAAGACGCTTCGAATAATTTGGGATCCTCGGGTGCGACGGTCACA
CCAGCGAACACCTATTTTTACACAGGGGCGACCAGCACGTTACACGAACC
TACCTCCAATTTTGTTAAAAAACAGTCCTCAAACCGCCTCTGAATTGGGC
CTTCATCGCTGTGTGGGCCGCCGAAAACGCGCCCCAAAAAGAATTTCGAC
GGTACCGCGCTGTAGAGGCATCTCAACAGATTCTTGTGATGGTAGGAGTA
ATTTTGGAGTTGTCGAGGAATAAGTGCCCAGCCCTATGGCTAAGTGGCCA
AAGCGGCCGATCAGGGGCGACGCCGTTTCGTACTTCGTGAAGAAAAAATC
GGGAAAAGGTCTGTACGGGGCCCCCAGCAACCCGAGTGTATCATCGACAA
AAGTCTTGGGCAAGCAACCGCAGACGGGGGGAGTGGGGGCCTTGGGGAAA
GGAACCCTTCTGTTGGGACCACGGTTCAGTATTCGGGCAAGATGTCCTCG
TGACAGGGAGCCCATCGAGCACTGGAAATAAATGTGAAGAAAAAAAAAAT
GCAAGCAAGTATGGATATCATCCGCGGCGGGGCTGCTGTCGTTGCAGTGC
ACTGCTGGCTCAGTCCGGGCGATTATGTACCGTAGTATGCGGGTCATTTC
GCCCCCTCCCCCACTGGAGGCGTTTTTTACGCTCGATTATACGCCTTAGG
CCAAATGTTACGGGAGCAGATTGGAATCCTGGATCCAATCCGCTGGGGGC
ACGCAGACGAACTTTTCTTGGCTGAGAATCGCTCTTTTTTGCTCAGGGCT
CGCCTCCCAGACATCTGTTTGCAGCCTAACCAACAGGGATGTGTGCTCCA
ACGGCGTGACTGTCTTGGAGCGCAGTTTGGGGAGCAACGGTGAGGTGTGG
GCCTCACACGCTTTGGAACCCAAGAATTCCAAACTGGAATTTCGCGTTGG
AAATCCGGCGGATTTTCCCAACAGGGAATACTCAGCGATTCCAATGTGGA
ATCTTTTGGTTTCAAAGCGTGTGAGGCCTACACCTCACCGAATCTTTGGT
TTCAAAGCGTGTGAGGCCTACACCTCACCGTTGCTCCCCAAACTTGGCTC
CGACACAGTCACGCCGTTGGAGCACACATTCCTGTTGGTTAGGCTGCAAA
CGGGTGTCTGGGAGGCGAGCCCTGAGCAAAAAAGAGCGATTCTCACTTCA
TCTGCGTGTGCCCCCAGCGGACGATTCCGGATTGGAATCCTGGATTCCAA
CCTGCTCCCATAACAGTTGGCCTTAACGAAGAGGATGCTGCCGCCACCGA
GAAGGGTGGCATTGGGACGGTCATGTCGAGAGCTGCTCCTGGAAAGGCGT
CGTGGTGGTACTGGCATCTCCGTTAAGGAGAAATCGAGCTTTGAAAACCG
GTCCGGGGGTGCGATGAGGCTACACAAGTAGTACAACACGGAACACACAG
AATAACCCGATCCTCTGACAGTTTAATTTTTTGCGAATGGACCGGTCTGG
TCGTTGCCATGTGTTGAAACTTAAAAAGCGTATTCTACGTACCACAGAAA
CTGCCGTACCATGAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTGTT
TCTTCACATTAGCTCGTAAATCGGGATTGCTAATTCAAAAAAATCTACGT
AGCAACTCACGGCCCGTGGTCACAGAAGTGCTAGAGCCACCAGGAGATCC
GAAAAGGACATACGCAGATACACCGGGCAAGGGTACACAAGGCCGAGGAG
GAACACCTATGAATATTCCGTGTATGACCCTGACTGCTTTGTGTGGGGGT
CGTCAGCAGAGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTT
CTCTCTCTTGACACTGCTCCTGTTCTCTCTCGGGGTTCGCGCGAACACAG
GAAATCGGCAAGGTCTCGTTCCGGGCGCACTTCCCCCGAGACTATCCGCG
GACCCCCCCGACACTCCTGCTGACGGAAGAGCTCATCCACCCGAACTGGC
AGTTTCCGGCGAGGGGGCTGCAGGTGCCGCACCTCACCAAGGAGGGCTGG
GACCCGAGTATGACGATTTCGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1473:14490..18513+

>mRNA_L-elsbetiae_contig1473.3440.1 ID=mRNA_L-elsbetiae_contig1473.3440.1|Name=mRNA_L-elsbetiae_contig1473.3440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1374bp|location=Sequence derived from alignment at L-elsbetiae_contig1473:14490..18513+ (Laminarionema elsbetiae ELsaHSoW15)
ATCCCCGGAGCCAACCCACCCGCCGCGGTCGAGAGAGAGAGAGGAGAGAG
AGGGACCAGAGAGAGAGGGACCAGAGAGAGAGGGACCAGAGAGAAAGGGG
ATCGAGGGGAAGTCATCCGCAGCAGCGTCTCTTCTCTGCCGCCCCACTCG
GGTGCCGTGATGGCACAACCCAGAGGCAGCGGTGCTGTTGAAAGGAATAA
TTCGAGCAGGACGGAGCATGATGTTGCAGCATCAGGAAGAGGAGAACCGA
GAAGAGCATACAGCGGCAGAGGAGTGGACGCCCCGTCCGCGGCCGAAGGA
TCGAGGAGGTCCGCTCCGGGAGGGGGAGCGGTGGCGGCGGCGCTGGCGAC
GCCGGCGCTGAGCCCGCGGTTTCTGTCGGCCGAGTCGCGGCTAGCCCAGG
AGAAGACTTGGCTGGCGGACGCGCTGCCGCAGTACTGCCACGCAGAGCCC
ATCAGAGGGTCGGATTTCGTGTGGTCATTCAGGGTCGCTGGGATGCACAG
GACCCTGTACCAGATCCCCGGAGCCAACCCACCCGCCGCGGTCGAGAGAG
AGAGAGGAGAGAGAGGGACCAGAGAGAGAGGGACCAGAGAGAGAGGGACC
AGAGAGAAAGGGGATCGAGGGGAAGTCATCCGCAGCAGCGTCTCTTCTCT
GCCGCCCCACTCGGGTGCCGTGATGGCACAACCCAGAGGCAGCGGTGCTG
TTGAAAGGAATAATTCGAGCAGGACGGAGCATGATGTTGCAGCATCAGGA
AGAGGAGAACCGAGAAGAGCATACAGCGGCAGAGGAGTGGACGCCCCGTC
CGCGGCCGAAGGATCGAGGAGGTCCGCTCCGGGAGGGGGAGCGGTGGCGG
CGGCGCTGGCGACGCCGGCGCTGAGCCCGCGGTTTCTGTCGGCCGAGTCG
CGGCTAGCCCAGGAGAAGACTTGGCTGGCGGACGCGCTGCCGCAGTACTG
CCACGCAGAGCCCATCAGAGGGTCGGATTTCGTGTGGTCATTCAGGGTCG
CTGGGATGCACAGGACCCTGTACCAGGAAATCGGCAAGGTCTCGTTCCGG
GCGCACTTCCCCCGAGACTATCCGCGGACCCCCCCGACACTCCTGCTGAC
GGAAGAGCTCATCCACCCGAACTGGCAGTTTCCGGCGAGGGGGCTGCAGG
TGCCGCACCTCACCAAGGAGGGCTGGGACCCGAGTATGACGATTTCGAAG
GAAATCGGCAAGGTCTCGTTCCGGGCGCACTTCCCCCGAGACTATCCGCG
GACCCCCCCGACACTCCTGCTGACGGAAGAGCTCATCCACCCGAACTGGC
AGTTTCCGGCGAGGGGGCTGCAGGTGCCGCACCTCACCAAGGAGGGCTGG
GACCCGAGTATGACGATTTCGAAG
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