mRNA_L-elsbetiae_contig14727.3436.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14727.3436.1
Unique NamemRNA_L-elsbetiae_contig14727.3436.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14727.3436.1 vs. uniprot
Match: W7U083_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U083_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.610e-11
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 3 
Query:   72 VLKPQTLRNWKLLTGVASAATVFHTVFRVDYGPHDHCFTGIQRWYNDRMDSLLGI 236
            VLKP TLR WK+ TGV    T F  VF  DYG  +H FT IQRWY  ++DSLLG+
Sbjct:    7 VLKPSTLRAWKVATGVICLVTGFQLVFLTDYGDKEHVFTPIQRWYMGQLDSLLGV 61
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14727.3436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
W7U083_9STRA1.610e-1158.18Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14727contigL-elsbetiae_contig14727:2907..4218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size971
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14727.3436.1prot_L-elsbetiae_contig14727.3436.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14727 2975..3570 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.749097-UTR-L-elsbetiae_contig14727:2906..29741622815592.749097-UTR-L-elsbetiae_contig14727:2906..2974Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14727 2907..2974 +
1691682978.916072-UTR-L-elsbetiae_contig14727:2906..29741691682978.916072-UTR-L-elsbetiae_contig14727:2906..2974Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14727 2907..2974 +
1622815592.7787297-UTR-L-elsbetiae_contig14727:3570..42181622815592.7787297-UTR-L-elsbetiae_contig14727:3570..4218Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14727 3571..4218 +
1691682978.9529235-UTR-L-elsbetiae_contig14727:3570..42181691682978.9529235-UTR-L-elsbetiae_contig14727:3570..4218Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14727 3571..4218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.7595606-CDS-L-elsbetiae_contig14727:2974..30971622815592.7595606-CDS-L-elsbetiae_contig14727:2974..3097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14727 2975..3097 +
1691682978.9264307-CDS-L-elsbetiae_contig14727:2974..30971691682978.9264307-CDS-L-elsbetiae_contig14727:2974..3097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14727 2975..3097 +
1622815592.7691383-CDS-L-elsbetiae_contig14727:3438..35701622815592.7691383-CDS-L-elsbetiae_contig14727:3438..3570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14727 3439..3570 +
1691682978.9378724-CDS-L-elsbetiae_contig14727:3438..35701691682978.9378724-CDS-L-elsbetiae_contig14727:3438..3570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14727 3439..3570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14727.3436.1

>prot_L-elsbetiae_contig14727.3436.1 ID=prot_L-elsbetiae_contig14727.3436.1|Name=mRNA_L-elsbetiae_contig14727.3436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MVLKPQTLRNWKLLTGVASAATVFHTVFRVDYGPHDHCFTGIQRWYNDRM
DSLLGIGPDQAQGRGTGVEEEMGRDRQTGDRAVK*
back to top

mRNA from alignment at L-elsbetiae_contig14727:2907..4218+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14727.3436.1 ID=mRNA_L-elsbetiae_contig14727.3436.1|Name=mRNA_L-elsbetiae_contig14727.3436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1312bp|location=Sequence derived from alignment at L-elsbetiae_contig14727:2907..4218+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGGTCGCCGGCGAACGAACGCGTTGGACGTCTGGCTAGCCGTCTCGCG
TGCTCTAGGTTCCGGAGCATGGTGCTCAAGCCGCAGACCCTCCGAAATTG
GAAGCTCTTGACGGGAGTGGCATCCGCAGCGACAGTGTTCCACACCGTGT
TCCGTGTGGACTACGGACCTCATGACCACTGCTTCACGGGGGTGAGACTT
GGGGCAGCAAGTGCGGTAGAAGTGTTGGTTGAGCATCAGGCAGCTAGGTA
TTGCTGACGGACACAGCAGTGGGAGCTTGCGTGGGCTCTTCAAGGCCCTT
GTTCGAGAAAAGTGTTTTGCACAGCGCTGAAGAAAGTGTCGGAGCCTCTC
TCTCAGCACTAGGAGTATCATTGGACCCTGCTGGGAGGAGGCATTATTGA
AAGAGGCATTATTGTTGGCAGCACTACTGCTGCACGATGTACACAGGCCG
CCAAAAAAAAAACTCTCCAAATCCCGCACCTTCGTTCTTTTCTGTCGCCT
TGTCGCAACGAAACATCTGCGGCCCGAGGCAGATCCAAAGATGGTACAAC
GACAGGATGGACTCCCTTCTAGGGATCGGGCCCGACCAGGCGCAGGGACG
GGGCACGGGGGTTGAGGAAGAGATGGGGCGAGATCGGCAGACCGGCGACA
GAGCCGTAAAGTAGGCGAGATTGGTGAATGGTGGATGGTTGTTCCTGTTT
TTTTGGTTTCCTTGCCAAAACAATAAAACAATGAAAGTGAGGTTTTCGTA
GTTGCTGCAGCAGTCTGTGCGGGGTAGAGATGGGATGAGGTTGTATGTTT
AGGTATTTGTTTTTGACGCTGTCTTGTTTGGCAACGCTCGGTGCGAGGGG
GTAGGAACTACGGCTTGAATAGTAGACTACCGGATGGAGGTATTTTGCTG
CCACCAACAAGGTGTGTTGCTTTTCCATTGACTCAGCCAGCTGCATATAC
TGGTGGGGCATAAACCAACCCTCCCATATGTGGTCGATCTCTCGGAAATG
CCCACCATGCCGTAGCTTTTGTTTCCTTTCGATGGCAGCCATGAACGCCC
GAGCCCAAACAACTTGCTCACTCTGATGGACACTAACCCTATCGCCATGA
GTATAGCTAGACAAGCAGTCTCACCCATGACGATGAGATTAGTGCTATTT
ACATCTGTGTCGGACTTGTACTGTCTGTAGTGCCGCCTCAGCTACCCAGA
AGAAAACAAACTACCGCATAGTAGGCGACGTCTGAGAGGCTATTAACCAG
ACGCTGGAGCAGAGCCGGGCTATGCCCTACCAGGAGGCGCAATGCGGCTT
GTTTTTAAATCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14727:2907..4218+

>mRNA_L-elsbetiae_contig14727.3436.1 ID=mRNA_L-elsbetiae_contig14727.3436.1|Name=mRNA_L-elsbetiae_contig14727.3436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig14727:2907..4218+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCTCAAGCCGCAGACCCTCCGAAATTGGAAGCTCTTGACGGGAGT
GGCATCCGCAGCGACAGTGTTCCACACCGTGTTCCGTGTGGACTACGGAC
CTCATGACCACTGCTTCACGGGGATGGTGCTCAAGCCGCAGACCCTCCGA
AATTGGAAGCTCTTGACGGGAGTGGCATCCGCAGCGACAGTGTTCCACAC
CGTGTTCCGTGTGGACTACGGACCTCATGACCACTGCTTCACGGGGATCC
AAAGATGGTACAACGACAGGATGGACTCCCTTCTAGGGATCGGGCCCGAC
CAGGCGCAGGGACGGGGCACGGGGGTTGAGGAAGAGATGGGGCGAGATCG
GCAGACCGGCGACAGAGCCGTAAAGTAGATCCAAAGATGGTACAACGACA
GGATGGACTCCCTTCTAGGGATCGGGCCCGACCAGGCGCAGGGACGGGGC
ACGGGGGTTGAGGAAGAGATGGGGCGAGATCGGCAGACCGGCGACAGAGC
CGTAAAGTAG
back to top