mRNA_L-elsbetiae_contig1472.3431.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1472.3431.1
Unique NamemRNA_L-elsbetiae_contig1472.3431.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1472.3431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1472contigL-elsbetiae_contig1472:22812..23793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size984
Cds size693
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.4042225-UTR-L-elsbetiae_contig1472:22811..231001622815592.4042225-UTR-L-elsbetiae_contig1472:22811..23100Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1472 22812..23100 +
1691682978.7461367-UTR-L-elsbetiae_contig1472:22811..231001691682978.7461367-UTR-L-elsbetiae_contig1472:22811..23100Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1472 22812..23100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.4177604-CDS-L-elsbetiae_contig1472:23100..237931622815592.4177604-CDS-L-elsbetiae_contig1472:23100..23793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1472 23101..23793 +
1691682978.7573166-CDS-L-elsbetiae_contig1472:23100..237931691682978.7573166-CDS-L-elsbetiae_contig1472:23100..23793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1472 23101..23793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1472.3431.1prot_L-elsbetiae_contig1472.3431.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1472 23101..23793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1472.3431.1

>prot_L-elsbetiae_contig1472.3431.1 ID=prot_L-elsbetiae_contig1472.3431.1|Name=mRNA_L-elsbetiae_contig1472.3431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp
MAGPLSASGVVATLVLEIHHSVLFVPRAELYRFATGNTIARPLGASGVVA
HLVLEIHHPVLLVSRAELHRCAAGSTIARLLGAGGVAATLVPDIHHPVLL
VVRAELLLLAAGSTIVRPRGASGVVATLVPDIYHPVLLVVRAELLLLAAG
NTIVSPRGATVVGAVLVVDIHHPLLLVSKAELRCFAAGSTIGRVRGATVI
GALPVLDIHHPLLSVSRAERRCFAASHTIVR
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mRNA from alignment at L-elsbetiae_contig1472:22812..23793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1472.3431.1 ID=mRNA_L-elsbetiae_contig1472.3431.1|Name=mRNA_L-elsbetiae_contig1472.3431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=982bp|location=Sequence derived from alignment at L-elsbetiae_contig1472:22812..23793+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGTGGAGCTGCAGACGGGTCAACGGGAGTCTGGCGGGCTCTCTTG
CTCGAGAAGACCTCCGTCTGCTTGGACGAGGAAGAACGGCCCTTCCGCTC
TTGGCCGGCACCAGTACCGTGGGTGGTGCCATCGTCGTCCACTGCTACAC
GGTCACGCTCGCTTCCGCTGCCGTTGCTGCTGCCGCTCCGTGCTTCGCCA
CTAGACCTGTACTTTGGTGCATTGAGTTGGGCCATGCCCCCTTCCGCGTG
TTGGCCACATAACTCTCTCTTGGTGCTGCCGATAATACCATGGCTGGACC
GCTTAGTGCAAGTGGCGTAGTTGCAACTCTTGTGCTTGAGATCCACCATT
CCGTCCTTTTTGTGCCCAGAGCAGAACTCTATCGTTTTGCTACCGGCAAC
ACCATAGCTCGGCCGCTTGGTGCAAGTGGCGTAGTTGCACATCTTGTGCT
TGAGATCCACCATCCCGTCCTTCTTGTGTCCAGAGCAGAACTCCATCGTT
GTGCTGCCGGCAGCACCATAGCTCGCCTGCTTGGTGCAGGTGGCGTAGCT
GCAACTCTTGTACCTGACATTCACCATCCCGTCCTTCTTGTGGTCAGAGC
AGAACTCCTTCTTCTTGCTGCTGGCAGCACCATAGTTCGCCCGCGTGGTG
CAAGTGGCGTAGTTGCAACTCTTGTTCCTGACATCTACCATCCCGTCCTT
CTTGTGGTCAGAGCAGAACTCCTTCTTCTTGCTGCCGGCAACACCATAGT
TAGCCCGCGTGGTGCAACCGTGGTGGGCGCAGTTCTTGTTGTTGACATCC
ACCATCCCCTCCTTCTTGTGTCCAAAGCAGAACTCCGCTGTTTTGCTGCC
GGTAGCACCATAGGTCGGGTGCGTGGTGCAACCGTAATAGGCGCACTTCC
TGTTCTTGACATTCACCATCCCCTCCTTTCTGTGTCCAGAGCAGAACGCC
GCTGTTTTGCTGCCAGCCACACCATAGTTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1472:22812..23793+

>mRNA_L-elsbetiae_contig1472.3431.1 ID=mRNA_L-elsbetiae_contig1472.3431.1|Name=mRNA_L-elsbetiae_contig1472.3431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig1472:22812..23793+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGGACCGCTTAGTGCAAGTGGCGTAGTTGCAACTCTTGTGCTTGA
GATCCACCATTCCGTCCTTTTTGTGCCCAGAGCAGAACTCTATCGTTTTG
CTACCGGCAACACCATAGCTCGGCCGCTTGGTGCAAGTGGCGTAGTTGCA
CATCTTGTGCTTGAGATCCACCATCCCGTCCTTCTTGTGTCCAGAGCAGA
ACTCCATCGTTGTGCTGCCGGCAGCACCATAGCTCGCCTGCTTGGTGCAG
GTGGCGTAGCTGCAACTCTTGTACCTGACATTCACCATCCCGTCCTTCTT
GTGGTCAGAGCAGAACTCCTTCTTCTTGCTGCTGGCAGCACCATAGTTCG
CCCGCGTGGTGCAAGTGGCGTAGTTGCAACTCTTGTTCCTGACATCTACC
ATCCCGTCCTTCTTGTGGTCAGAGCAGAACTCCTTCTTCTTGCTGCCGGC
AACACCATAGTTAGCCCGCGTGGTGCAACCGTGGTGGGCGCAGTTCTTGT
TGTTGACATCCACCATCCCCTCCTTCTTGTGTCCAAAGCAGAACTCCGCT
GTTTTGCTGCCGGTAGCACCATAGGTCGGGTGCGTGGTGCAACCGTAATA
GGCGCACTTCCTGTTCTTGACATTCACCATCCCCTCCTTTCTGTGTCCAG
AGCAGAACGCCGCTGTTTTGCTGCCAGCCACACCATAGTTCGGATGGCTG
GACCGCTTAGTGCAAGTGGCGTAGTTGCAACTCTTGTGCTTGAGATCCAC
CATTCCGTCCTTTTTGTGCCCAGAGCAGAACTCTATCGTTTTGCTACCGG
CAACACCATAGCTCGGCCGCTTGGTGCAAGTGGCGTAGTTGCACATCTTG
TGCTTGAGATCCACCATCCCGTCCTTCTTGTGTCCAGAGCAGAACTCCAT
CGTTGTGCTGCCGGCAGCACCATAGCTCGCCTGCTTGGTGCAGGTGGCGT
AGCTGCAACTCTTGTACCTGACATTCACCATCCCGTCCTTCTTGTGGTCA
GAGCAGAACTCCTTCTTCTTGCTGCTGGCAGCACCATAGTTCGCCCGCGT
GGTGCAAGTGGCGTAGTTGCAACTCTTGTTCCTGACATCTACCATCCCGT
CCTTCTTGTGGTCAGAGCAGAACTCCTTCTTCTTGCTGCCGGCAACACCA
TAGTTAGCCCGCGTGGTGCAACCGTGGTGGGCGCAGTTCTTGTTGTTGAC
ATCCACCATCCCCTCCTTCTTGTGTCCAAAGCAGAACTCCGCTGTTTTGC
TGCCGGTAGCACCATAGGTCGGGTGCGTGGTGCAACCGTAATAGGCGCAC
TTCCTGTTCTTGACATTCACCATCCCCTCCTTTCTGTGTCCAGAGCAGAA
CGCCGCTGTTTTGCTGCCAGCCACACCATAGTTCGG
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