mRNA_L-elsbetiae_contig103.343.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig103.343.1
Unique NamemRNA_L-elsbetiae_contig103.343.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig103.343.1 vs. uniprot
Match: D8LBJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ4_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 7.070e-49
Identity = 75/85 (88.24%), Postives = 79/85 (92.94%), Query Frame = 1 
Query:    1 MGITAMAVGGTFGVLAKGTVNRLMKVGLRRAPWEYVLGAGIGAYVGNKIPQWEAAMVEDINEMRADRNMPPATRVGGYVFGSSIT 255
            MGITAM VGG FG++AKGTVNRLMKV LRRAPWEYVLGAGIGAYVGNKIPQWEA ++ DINEMRADRNMPPATRVGGY FGSSIT
Sbjct:    1 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPATRVGGYEFGSSIT 85
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BLAST of mRNA_L-elsbetiae_contig103.343.1 vs. uniprot
Match: A0A6H5JVS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS4_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.210e-26
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:   82 LRRAPWEYVLGAGIGAYVGNKIPQWEAAMVEDINEMRADRNMPPATRVGGYVFGSSIT 255
            L  APWEYVLGAG+GAY+GNKIPQWEA ++ DINEMRADRNMPPATRVGGY FGSSIT
Sbjct:  587 LSPAPWEYVLGAGVGAYIGNKIPQWEATLISDINEMRADRNMPPATRVGGYEFGSSIT 644
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BLAST of mRNA_L-elsbetiae_contig103.343.1 vs. uniprot
Match: A0A7S2V622_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V622_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.150e-15
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 MGITAMAVGGTF-----GVLAKGTVNRLMKVGLRRAPWEYVLGAGIGAYVGNKIPQWEAAMVEDINEMRADRNMPPATRVGGYVFGSSI 252
            M IT+     TF     GV  K   N +MKV LRR PWEY++   +GAYVG K+P+W+  ++++INEM  +R +PP    G +  GS  
Sbjct:    1 MAITSSVAISTFYHFGWGVALKAMTNSVMKVPLRREPWEYLMFGALGAYVGYKMPEWQQNLIDNINEMHEERGLPPLDVDGQFSLGSKF 89
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BLAST of mRNA_L-elsbetiae_contig103.343.1 vs. uniprot
Match: A0A7R9ZF43_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZF43_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.300e-11
Identity = 34/78 (43.59%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:    1 MGITAMAVGGTFGVLAKGTVNRLMKVGLRRAPWEYVLGAGIGAYVGNKIPQWEAAMVEDINEMRADRNMPPATRVGGY 234
            MG+TAM VGG  G       N   KV L R+PW +V    +G Y G K    EA ++ DINE+RAD+ +PP     GY
Sbjct:   28 MGLTAMLVGGVSGTSMHLLANAARKVPLSRSPWFHVAYFFVGMYAGQKYVTVEAKLLNDINELRADKGLPPMVGTPGY 105
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BLAST of mRNA_L-elsbetiae_contig103.343.1 vs. uniprot
Match: A0A6V1ZZJ3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V1ZZJ3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 9.700e-10
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    1 MGITAMAVGGTFGVLAKGTVNRLMKVGLRRAPWEYVLGAGIGAYVGNKIPQWEAAMVEDINEMRADRNMPP 213
            MG+ A  VGGT G   +   N +MK+   R PW +V    +GAY  +K  Q E  +V++INE+R+D+ MPP
Sbjct:   18 MGLVATLVGGTLGTSVQLVTNGVMKIPYSRKPWLHVTYFFLGAYGAHKYLQVEQRLVDEINEIRSDKGMPP 88
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BLAST of mRNA_L-elsbetiae_contig103.343.1 vs. uniprot
Match: A0A7S2BG82_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BG82_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.410e-7
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:    1 MGITAMAVGGTFGVLAKGTVNRLMKVGLRRAPWEYVLGAGIGAYVGNKIPQWEAAMVEDINEMRADRNMPPATRVGGYVFG 243
            MG+ +  VG  FG   +   N + ++ L R P+ +V  A +G YVG + P+ EAA+ +DI E+R ++N+    RVGG  FG
Sbjct:   27 MGLLSTMVGMGFGFGLQTYSNAIRRLPLAREPYLHVGFALMGGYVGYQYPKVEAALYQDIVEIRKEKNLSSPERVGGNTFG 107
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BLAST of mRNA_L-elsbetiae_contig103.343.1 vs. uniprot
Match: K0R0Q8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0Q8_THAOC)

HSP 1 Score: 55.1 bits (131), Expect = 5.330e-7
Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    1 MGITAMAVGGTFGVLAKGTVNRLMKVGLRRAPWEYVLGAGIGAYVGNKIPQWEAAMVEDINEMRADRNMPP 213
            MG+TA  VG   G       N + KV L R PW +V    +G YVG +  + E  +V DINE+RAD+ MPP
Sbjct:  136 MGLTAFFVGAFSGTGMHMMSNAIQKVPLSRRPWMHVGCFFLGGYVGQRWVRLEKELVLDINEIRADKGMPP 206
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig103.343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LBJ4_ECTSI7.070e-4988.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVS4_9PHAE2.210e-2684.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V622_9STRA1.150e-1541.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9ZF43_9STRA2.300e-1143.59Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6V1ZZJ3_9STRA9.700e-1042.25Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2BG82_9STRA1.410e-738.27Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
K0R0Q8_THAOC5.330e-743.66Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig103contigL-elsbetiae_contig103:9155..12623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003750.1
Exons2
Model size276
Cds size276
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815258.9459548-CDS-L-elsbetiae_contig103:9154..92451622815258.9459548-CDS-L-elsbetiae_contig103:9154..9245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig103 9155..9245 +
1691682801.416116-CDS-L-elsbetiae_contig103:9154..92451691682801.416116-CDS-L-elsbetiae_contig103:9154..9245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig103 9155..9245 +
1622815258.9587681-CDS-L-elsbetiae_contig103:12438..126231622815258.9587681-CDS-L-elsbetiae_contig103:12438..12623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig103 12439..12623 +
1691682801.4268675-CDS-L-elsbetiae_contig103:12438..126231691682801.4268675-CDS-L-elsbetiae_contig103:12438..12623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig103 12439..12623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig103.343.1prot_L-elsbetiae_contig103.343.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig103 9155..12623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig103.343.1

>prot_L-elsbetiae_contig103.343.1 ID=prot_L-elsbetiae_contig103.343.1|Name=mRNA_L-elsbetiae_contig103.343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MGITAMAVGGTFGVLAKGTVNRLMKVGLRRAPWEYVLGAGIGAYVGNKIP
QWEAAMVEDINEMRADRNMPPATRVGGYVFGSSITGGSKTD*
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mRNA from alignment at L-elsbetiae_contig103:9155..12623+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig103.343.1 ID=mRNA_L-elsbetiae_contig103.343.1|Name=mRNA_L-elsbetiae_contig103.343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3469bp|location=Sequence derived from alignment at L-elsbetiae_contig103:9155..12623+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAATCACTGCGATGGCCGTGGGTGGTACGTTCGGCGTACTCGCAAA
GGGTACCGTGAACAGGCTGATGAAGGTCGGCCTGCGCAGAGGTGAGCAAA
AAAGCTATGGTATCTACATATGTAGTAACTGAACCAACAATGCACTCAAG
TCAACTTTTGTGAGGGGGGCTTGATATGCCAACTCTTCATTTACATCCCT
TGCTTGGCGAAGTAACCCCCCGACGAGATATGCTATCCCAAAGAGGGGGT
CAGAACCTCGATGCGAGACAGCCAGGAGCAACATCTCTTTTGCGCTACTA
CGGGCAGTCTGTTGCACTCCCGTAGAGATCGCCGTAGTATTTTTTTTAGA
GCGTTGGGATAAACAAATGCCACAACCGAGAATATGTGCGTTTCCTTTGC
GTTTCCTTTGCTGCATATTAAGGCAGCGCCCCTTCAAAACGTTTTGTCGA
GACGCAGCGGCGGAGGCCCGAACGGACTCGAGTCCCCAGTTCCCAGTGGA
CCCTAGAGAGCTCGTAGTTCATATCTACGGGGCACACACGCATTAGGTGC
CGCTAGCTTATAGCCTTATTCTTGGCTGTTACAGCCTGCTATCCACTACC
CCCGCACCAGAGTGAATGCATTTGCCCGTGGTTCGTTCACAGCCGTTACA
TAGATACACACATCTGCTTCGAATCAACTTTGACTCTGTGTACTAGACTT
TGTATGTACATCGATACACGAAGAACATCGATACACAAAGTACATCGATA
CGCGAAGTACATCGATACACGAAGAACATCGATACACGAAGTACTACATA
ACAAATACGACGTATTTTTGTAGAACCGGCCTGGTTTCGTAGACTACCGT
AGGTGACATAAAGATTAGACACGTGCCGGAGATGAGACTCCCCCAAACGA
ACTCTACACAATACCACACCTTGTGATGCCTTTTTTTGGGCACAAAAAAA
ATGGTCATTTATCACACCGGTGGCATATAAGATACCACACACCCCCTGAA
GTTATGCCTCGTTTTATTCACGGAGCCCTCGTAACACACCGCGTGGTACT
GGCGTGTTTTCACGTTTTCACACGCCAACGCATACACACGAGCATTCAAC
TATACACCGCTGGTATGCAGACAAACACAGATCAATTGAAGTGGAGGAAG
TAGTCAACCCTCTGGAAATGACGCGGCTAAGACGGCTGGCGTCGGCTACT
TCTGCGCCGGCGCCTTCACGCTCGATCACGTCATTTTTTTCGACACACCC
CGCCGCCGCCAAGCCAATCGATGGTGGTACTCCAGCAGCACTCGAGCCTG
CCGCCGCACGAGCTGCCGAAGGCCGCATAACAGAGTCTGCTGAGACCCGC
AGAGCAGAGCCTGCTGTGTGGCAGGAGTAATCTGTTGGCAATAGCGGATA
GCGGTATCACACCCCTTCAAGAACTTGTTTGGTATTTAGCAGCAATCTGT
TGGCATTGGCACAGAGATATCACGCCCCTTATTCTTCACACCCCCTCGTT
TTATCACACCCTTTCAAGGAGTTGTTTGGCAGCGGCAATCGGTTGTCATA
TATGGTATGTATCATACCCTTCTTACCACACCCCTTCAAGGAGTTGTTTA
GCAGCAGCAATCGGTTGTCACATATGGTATGTATCACACCCTTCTTATCG
TACCCCCTTGGTTTATCACGCCCCTGAGAGCGGGCTCCACGTCATGCACT
TTATCACACCGCCGGAGACAGAAGATAAGACACCCCTTACACAATAGCAC
ACCCTGTGATGGTTTTTCCAAACTCAATTTTCAATTTTGTTCATCACATA
TGGGTGTATTTATCTCATGTCTCGCGTAAGGTACACATTTCCATGCGTTG
TTGTGTGTGCGGAAATCGCGCATAGCTGTTGTATAGAGTTTCACGCCTTG
GAAATCCTTAATCCTTGGTACCTGACCGGGGGTGGAATTCTACCCCTGTA
CATCGCAGATTCCTTCACCACATGCAGCTGCTATATATGTAGACTAAATT
TTACACTACTGCTGTAGTGTAGTCAAACCATGGGGGGGTGGGTCGTGTTT
GCATCTCGTCCGTCCGGCGCCAGGGGGTGCTTGCTTCTGCTGCTCTCTTA
CCGGAGTATGTATCACAACGTCCATACGCTCTCCTCACTCGGGGTTTCTG
TAAGCCTCACAGACTGCGACAGGAGTACTCTACGGTATTTATTGCTTCCA
ACAAACCCATGGACATTTACCTCCACACCCGCCAAGTCCCTAACACCAGT
ACGGCAGCCCTTGGTGCAAAAAACACAAGCATTTTCGTAGGGTGTGCCGC
AGACTTGAAGTTGGGGGGGATAGATTTCTGGTTCGGAATTTGATTGCTTT
GAAATCAGTACAATAAGGGACATGTGTCTTGGCGCGCAATTATTAGGTGC
GCCACAGGCCACACAGCCCGTTCGGCTGTCCTGACTACCTATGATGTTGG
GTATCTTCGCGTGTCGACTGTTTCCGCTGGTGTACACGGCGTGTGTATTC
TTTCGTGAAGCACAATCCGACCAGCAAATATTGAGTGTTTTTGACAGGTT
TGAACACAAGTTCTCCAGTTCGAACGTCACCGTGCACTGATCCTGCAGTG
TTCCGACGAGGTGCTTCCCCGAAGGCCCCGTTTCCAAAGACCCCCAGCAC
TCCATGGCCGACCCTCGCTGCTGTCTGCCCCGTGCGTGCGTGCGTGCGCT
GACTTTTGCGGACACACCAAAATGTGGTTTTCTTGGTGCATACAAGGGCT
CTTTCAGTCGGCCACCGCATAGCTCTGCTACTAACAGTGAAGGCTCCGTC
ATCTTGGAAACTATTTCGTTTGAAAGCGCAAACTTCGATTTTTCAGTGAG
AAATGACAGCTGGAGGAGGGATCTACCGCATTGTTATGTGGAGATGGCAG
CCAGGTGTCAAGGCCCTCTCCTGTAACATGTTTCCCCAATTCCCCCCCAA
TTCCAAATGTGGGAGAAAAGGCACACCCTTAAGGGTCCGTTGCTGCTGTG
CCGACAGCGGCAGCAATAAGGAGGCAACAAGGCAGCGTTGTCGTGCACCA
GTGACCATGTGACCGATTTTCATAGTACCAATGCGGCAAACAAGCTGCCA
CTTCCTCCCGTCCTCGGAGAACTGTCTTCTTCTATCGGTCGCCCGCGATC
GTAATTTTTTCCGACCGCAAAGGCCGCGTCGAGAGCACCTGTCAAATCAC
GGGGGATGTTTCCACCCCATCGCCCAACCCACACCCAAGCACGCCCTTCC
TTACCTCTTCGTGTGCACTCGTGTGTGTGTGCAGCGCCTTGGGAGTACGT
GCTGGGCGCCGGGATCGGCGCCTACGTTGGAAACAAGATTCCTCAGTGGG
AGGCGGCTATGGTAGAGGACATCAACGAGATGCGAGCAGACCGCAACATG
CCACCGGCAACCCGTGTAGGGGGCTACGTGTTCGGGTCGAGCATAACCGG
CGGCAGCAAGACGGATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig103:9155..12623+

>mRNA_L-elsbetiae_contig103.343.1 ID=mRNA_L-elsbetiae_contig103.343.1|Name=mRNA_L-elsbetiae_contig103.343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig103:9155..12623+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAATCACTGCGATGGCCGTGGGTGGTACGTTCGGCGTACTCGCAAA
GGGTACCGTGAACAGGCTGATGAAGGTCGGCCTGCGCAGAGATGGGAATC
ACTGCGATGGCCGTGGGTGGTACGTTCGGCGTACTCGCAAAGGGTACCGT
GAACAGGCTGATGAAGGTCGGCCTGCGCAGAGCGCCTTGGGAGTACGTGC
TGGGCGCCGGGATCGGCGCCTACGTTGGAAACAAGATTCCTCAGTGGGAG
GCGGCTATGGTAGAGGACATCAACGAGATGCGAGCAGACCGCAACATGCC
ACCGGCAACCCGTGTAGGGGGCTACGTGTTCGGGTCGAGCATAACCGGCG
GCAGCAAGACGGATTGACGCCTTGGGAGTACGTGCTGGGCGCCGGGATCG
GCGCCTACGTTGGAAACAAGATTCCTCAGTGGGAGGCGGCTATGGTAGAG
GACATCAACGAGATGCGAGCAGACCGCAACATGCCACCGGCAACCCGTGT
AGGGGGCTACGTGTTCGGGTCGAGCATAACCGGCGGCAGCAAGACGGATT
GA
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