mRNA_L-elsbetiae_contig1472.3429.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1472.3429.1
Unique NamemRNA_L-elsbetiae_contig1472.3429.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1472.3429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1472contigL-elsbetiae_contig1472:14229..14954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size726
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1472.3429.1prot_L-elsbetiae_contig1472.3429.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1472 14399..14785 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.3001125-UTR-L-elsbetiae_contig1472:14228..143981622815592.3001125-UTR-L-elsbetiae_contig1472:14228..14398Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1472 14229..14398 +
1691682978.6931295-UTR-L-elsbetiae_contig1472:14228..143981691682978.6931295-UTR-L-elsbetiae_contig1472:14228..14398Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1472 14229..14398 +
1622815592.3245385-UTR-L-elsbetiae_contig1472:14785..149541622815592.3245385-UTR-L-elsbetiae_contig1472:14785..14954Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1472 14786..14954 +
1691682978.714176-UTR-L-elsbetiae_contig1472:14785..149541691682978.714176-UTR-L-elsbetiae_contig1472:14785..14954Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1472 14786..14954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.310845-CDS-L-elsbetiae_contig1472:14398..147851622815592.310845-CDS-L-elsbetiae_contig1472:14398..14785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1472 14399..14785 +
1691682978.7043645-CDS-L-elsbetiae_contig1472:14398..147851691682978.7043645-CDS-L-elsbetiae_contig1472:14398..14785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1472 14399..14785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1472.3429.1

>prot_L-elsbetiae_contig1472.3429.1 ID=prot_L-elsbetiae_contig1472.3429.1|Name=mRNA_L-elsbetiae_contig1472.3429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MSRAELLLLAAGSTIVRPRGATVVDAVTIVDIHHPLLLVLRAELRCFAAG
STIARLLGASGVGATLVPDIYHPLLLVVRAELHRFAAGSTKARLLGATVA
NAHLVPDIHHPLLLVPRAELHCFGSGST*
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mRNA from alignment at L-elsbetiae_contig1472:14229..14954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1472.3429.1 ID=mRNA_L-elsbetiae_contig1472.3429.1|Name=mRNA_L-elsbetiae_contig1472.3429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig1472:14229..14954+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCAACCGTGGTGGACGCAGTTTCTGTTGTTGACATTCACCATCCCCTC
CTTCTTGTGGTCAGAGCAGAACTCCGCTATTCTACTGCCGGCAGCACCAT
AGCTCGCTTGCTTGGTGCAAGTGGCGTAGGTGCAACTCTTGTTCTTGACA
TTCACCATCCCGTCCTTCTTATGTCCAGAGCAGAACTCCTTCTTCTTGCT
GCCGGCAGCACCATAGTTCGCCCGCGTGGTGCAACCGTGGTGGACGCAGT
TACTATTGTTGACATTCACCATCCCCTCCTTCTTGTGCTCAGAGCAGAAC
TCCGCTGTTTTGCTGCCGGCAGCACCATAGCTCGCCTGCTTGGTGCAAGT
GGCGTAGGTGCAACTCTTGTTCCTGACATTTACCATCCCCTCCTTCTTGT
GGTCAGAGCAGAACTCCATCGTTTTGCTGCCGGCAGCACCAAAGCTCGCC
TGCTTGGTGCAACCGTGGCGAACGCACATCTTGTCCCTGACATTCACCAT
CCCCTCCTTCTTGTGCCCAGAGCAGAACTCCACTGTTTCGGTTCCGGCAG
CACCTAGCTGGGCCGCTTGCTACAGCCAACATGGCGAGACTTGCTCGGCA
TGCTCTTCGCTAAAGCACCCTACAAGAGGCAATGTGGCAGCAATAATCGG
TCGGTCTTGTGTCTAACTCCCCTCCAACTTTTTGGCTATGTCCAGGGCCT
GAGACCGCAACGCACCTACAACCTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1472:14229..14954+

>mRNA_L-elsbetiae_contig1472.3429.1 ID=mRNA_L-elsbetiae_contig1472.3429.1|Name=mRNA_L-elsbetiae_contig1472.3429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig1472:14229..14954+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCAGAGCAGAACTCCTTCTTCTTGCTGCCGGCAGCACCATAGTTCG
CCCGCGTGGTGCAACCGTGGTGGACGCAGTTACTATTGTTGACATTCACC
ATCCCCTCCTTCTTGTGCTCAGAGCAGAACTCCGCTGTTTTGCTGCCGGC
AGCACCATAGCTCGCCTGCTTGGTGCAAGTGGCGTAGGTGCAACTCTTGT
TCCTGACATTTACCATCCCCTCCTTCTTGTGGTCAGAGCAGAACTCCATC
GTTTTGCTGCCGGCAGCACCAAAGCTCGCCTGCTTGGTGCAACCGTGGCG
AACGCACATCTTGTCCCTGACATTCACCATCCCCTCCTTCTTGTGCCCAG
AGCAGAACTCCACTGTTTCGGTTCCGGCAGCACCTAGATGTCCAGAGCAG
AACTCCTTCTTCTTGCTGCCGGCAGCACCATAGTTCGCCCGCGTGGTGCA
ACCGTGGTGGACGCAGTTACTATTGTTGACATTCACCATCCCCTCCTTCT
TGTGCTCAGAGCAGAACTCCGCTGTTTTGCTGCCGGCAGCACCATAGCTC
GCCTGCTTGGTGCAAGTGGCGTAGGTGCAACTCTTGTTCCTGACATTTAC
CATCCCCTCCTTCTTGTGGTCAGAGCAGAACTCCATCGTTTTGCTGCCGG
CAGCACCAAAGCTCGCCTGCTTGGTGCAACCGTGGCGAACGCACATCTTG
TCCCTGACATTCACCATCCCCTCCTTCTTGTGCCCAGAGCAGAACTCCAC
TGTTTCGGTTCCGGCAGCACCTAG
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