mRNA_L-elsbetiae_contig14713.3425.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14713.3425.1
Unique NamemRNA_L-elsbetiae_contig14713.3425.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14713.3425.1 vs. uniprot
Match: UPI000A2A8802 (serine/threonine-protein kinase Nek8 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8802)

HSP 1 Score: 57.4 bits (137), Expect = 1.880e-6
Identity = 24/70 (34.29%), Postives = 46/70 (65.71%), Query Frame = 3 
Query:    3 CVVYETACLQRAFKKITM------VLQANYSPIPDKYSVELHDLVRGLLQAEPLERPSTGTVLQWPLIMD 194
            CV+YE A L+RAF+   +      +++ N+SPIP++YS+EL +L+  +L  +P +RP    ++  P++++
Sbjct:  191 CVLYELAVLKRAFEATNLPALVLKIIRGNFSPIPERYSLELRELILSMLSLDPAKRPGIPQIMAQPVVVN 260
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BLAST of mRNA_L-elsbetiae_contig14713.3425.1 vs. uniprot
Match: A0A8C5MEU5_9ANUR (Protein kinase domain-containing protein n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5MEU5_9ANUR)

HSP 1 Score: 53.1 bits (126), Expect = 4.910e-5
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:    3 CVVYETACLQRAFKKITMV------LQANYSPIPDKYSVELHDLVRGLLQAEPLERPSTGTVL 173
            CV+YE + L+ AF    ++      +Q  YSP+PD +S +LHDL++ +LQ +P  RPS  ++L
Sbjct:  194 CVLYEMSSLKPAFDASNLISLFYKIVQGEYSPLPDCFSEDLHDLLKTILQKKPESRPSANSIL 256
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BLAST of mRNA_L-elsbetiae_contig14713.3425.1 vs. uniprot
Match: UPI001CF3EEBA (LOW QUALITY PROTEIN: serine/threonine-protein kinase Nek8-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3EEBA)

HSP 1 Score: 52.8 bits (125), Expect = 5.590e-5
Identity = 28/96 (29.17%), Postives = 52/96 (54.17%), Query Frame = 3 
Query:    3 CVVYETACLQRAFKK------ITMVLQANYSPIPDKYSVELHDLVRGLLQAEPLERPSTGTVLQWPLIMDKAQTRKLAISEDARHAAETELVGMKG 272
            CV+YE A L RAF+       +  +++ N+SPI ++YS EL +L+  +LQ +  +RP+   ++  PL+++     +  I     +     +VG+ G
Sbjct:  192 CVLYELATLNRAFEASNLPALVLKIMKGNFSPISERYSEELKNLILSMLQIDQAKRPTLPQIMAQPLLVNALFNLRTDIGRVPCNRTPRPMVGIAG 287
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BLAST of mRNA_L-elsbetiae_contig14713.3425.1 vs. uniprot
Match: A0DCS7_PARTE (Protein kinase domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DCS7_PARTE)

HSP 1 Score: 52.4 bits (124), Expect = 8.930e-5
Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 3 
Query:    3 CVVYETACLQRAFKKITM------VLQANYSPIPDKYSVELHDLVRGLLQAEPLERPSTGTVLQWPLIMDKA 200
            C++YE A  Q  F+   +      +    Y PIP KYS +L ++++ LLQ  P  RPS  T+L+ PL++ K+
Sbjct:  204 CIIYELAAQQPPFRAADLQSLSRRIQTGVYDPIPGKYSKDLSEVIKLLLQVNPRSRPSCDTILKNPLVIKKS 275
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14713.3425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI000A2A88021.880e-634.29serine/threonine-protein kinase Nek8 n=1 Tax=Exaip... [more]
A0A8C5MEU5_9ANUR4.910e-539.68Protein kinase domain-containing protein n=1 Tax=L... [more]
UPI001CF3EEBA5.590e-529.17LOW QUALITY PROTEIN: serine/threonine-protein kina... [more]
A0DCS7_PARTE8.930e-536.11Protein kinase domain-containing protein n=1 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14713contigL-elsbetiae_contig14713:67..2552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size530
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14713.3425.1prot_L-elsbetiae_contig14713.3425.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14713 1597..2499 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.0192401-UTR-L-elsbetiae_contig14713:66..1231622815592.0192401-UTR-L-elsbetiae_contig14713:66..123Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14713 67..123 -
1691682978.5304582-UTR-L-elsbetiae_contig14713:66..1231691682978.5304582-UTR-L-elsbetiae_contig14713:66..123Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14713 67..123 -
1622815592.035532-UTR-L-elsbetiae_contig14713:418..5411622815592.035532-UTR-L-elsbetiae_contig14713:418..541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14713 419..541 -
1691682978.5393598-UTR-L-elsbetiae_contig14713:418..5411691682978.5393598-UTR-L-elsbetiae_contig14713:418..541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14713 419..541 -
1622815592.0477371-UTR-L-elsbetiae_contig14713:1336..13991622815592.0477371-UTR-L-elsbetiae_contig14713:1336..1399Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14713 1337..1399 -
1691682978.5496454-UTR-L-elsbetiae_contig14713:1336..13991691682978.5496454-UTR-L-elsbetiae_contig14713:1336..1399Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14713 1337..1399 -
1622815592.0594893-UTR-L-elsbetiae_contig14713:1587..15961622815592.0594893-UTR-L-elsbetiae_contig14713:1587..1596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14713 1588..1596 -
1691682978.5651798-UTR-L-elsbetiae_contig14713:1587..15961691682978.5651798-UTR-L-elsbetiae_contig14713:1587..1596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14713 1588..1596 -
1622815592.1092372-UTR-L-elsbetiae_contig14713:2499..25521622815592.1092372-UTR-L-elsbetiae_contig14713:2499..2552Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14713 2500..2552 -
1691682978.6082058-UTR-L-elsbetiae_contig14713:2499..25521691682978.6082058-UTR-L-elsbetiae_contig14713:2499..2552Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14713 2500..2552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.0744195-CDS-L-elsbetiae_contig14713:1596..16711622815592.0744195-CDS-L-elsbetiae_contig14713:1596..1671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14713 1597..1671 -
1691682978.5762844-CDS-L-elsbetiae_contig14713:1596..16711691682978.5762844-CDS-L-elsbetiae_contig14713:1596..1671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14713 1597..1671 -
1622815592.087539-CDS-L-elsbetiae_contig14713:2058..21701622815592.087539-CDS-L-elsbetiae_contig14713:2058..2170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14713 2059..2170 -
1691682978.5870566-CDS-L-elsbetiae_contig14713:2058..21701691682978.5870566-CDS-L-elsbetiae_contig14713:2058..2170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14713 2059..2170 -
1622815592.0990937-CDS-L-elsbetiae_contig14713:2461..24991622815592.0990937-CDS-L-elsbetiae_contig14713:2461..2499Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14713 2462..2499 -
1691682978.5988958-CDS-L-elsbetiae_contig14713:2461..24991691682978.5988958-CDS-L-elsbetiae_contig14713:2461..2499Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14713 2462..2499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14713.3425.1

>prot_L-elsbetiae_contig14713.3425.1 ID=prot_L-elsbetiae_contig14713.3425.1|Name=mRNA_L-elsbetiae_contig14713.3425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
MVLQANYSPIPDKYSVELHDLVRGLLQAEPLERPSTGTVLQWPLIMDKAQ
TRKLAISEDARHAAETELVGMKGN*
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mRNA from alignment at L-elsbetiae_contig14713:67..2552-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14713.3425.1 ID=mRNA_L-elsbetiae_contig14713.3425.1|Name=mRNA_L-elsbetiae_contig14713.3425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2486bp|location=Sequence derived from alignment at L-elsbetiae_contig14713:67..2552- (Laminarionema elsbetiae ELsaHSoW15)
GGTGTGTTGTGTACGAGACGGCCTGCCTCCAACGCGCCTTCAAGAAAATC
ACCATGGTTCTTCAAGCGAACTATTCGCCAATACCTGACAAGTGCGTTGT
TCGCCTGCAATACCTTCGTCAAACGATCGGGTTCGGTGTGCTGTCGTAGC
GCATACCTTTTGTCTACAGAATCGTCACAGCTAAGTCTGGGCACAGAGTA
TGCTAAAGGATATCTATTTTCGGCGACCAGCGAGAAGGAGCGAGGAAGTA
ACGCGGTCAGGGAGAAAACAAACGTCCTCATTCCGATATATCATGTCAGA
CAAAACTGGAGCTTCTCCTTTTTTGAATCCGCTTACGTTGACTGGCTGGC
TGACTCACCGCGGAATGCTCTACAATGTGTAGGTATAGCGTGGAGCTGCA
TGACCTCGTGCGAGGGCTCCTGCAGGCAGAACCGCTCGAGCGCCCAAGCA
CCGGAACCGTTCTGCAATGGCCACTGATCATGGACAAGGCACAGGTGCGC
AGCTTTCGGGGCTGGGCACGACCGCTAAGAATGCCGTTGCCGACAAGCCT
CTAACACGCGCGTTCCTAATACTCTTCACAACGGTATTGTTCGGCTTCAA
GAACTCAACATCCCTTCAATGTCTATGGTTCCAGTCGTTGGAATCAAGTG
GTTCGACTGGTGCGGAAGTATTGCCCACGGTCGCGGCTATTGCGACACCA
AAGCCGCTTCTTTCTGGCCTCAACCTGTTGTCATGAGCGCAATCGGCAAT
GCATATTCAAATTGAAGGCAATCGAAGGAGCGAAAAAATGACGAAACATT
TTATGTACTAATGTACAATGCAGGCTATCTACTCTGTCTAACAGCTCTGT
ACGTGGTTCACTCTTAACTCTGTCTCGAAAGACGAGGAAACTAGCCATCT
CCGAGGATGCAAGACACGCGGCGGAAACCGAGCTGGTTGGAATGAAGGGG
AATTAGGAAGAACTTGTGAGTACGGTATGGTCCATCCAGTCGAAGGCGGG
AAACCAACGGCGGCGAGCATGTGGTGATGTTGTTTTGCTCGGTCGGCAAT
CGCACTGACTAATCCAAGGTGGCGCGATGTGATGCTGCTGTGTTCTGATT
TTAAGGTATCTCTGCATCGGTTGCAATCTTGACTCTCTCTCTTTCTTTTA
AAGACGAGGAAACTGCAGGCGACGGACGCTGAGCTAGTCCGAAGCAAGCG
GGATCAGAAAGCACTTGTGAGTACGAATCTCCTCCAGCTGATGTAGGCGA
CGATGTTTCCACGAGCAACTGTTCACGTGACAGTTGGGCGGACATCACAG
CGGTGTGGTATCATCGAAAAACGAATGCGTGAGGTTTATCCGACATTTAG
ACTGTGTATGAGGGGACAATTTTGAATATCTCGCGACTGCTACGTCACCC
CTTGCTGGCACACAAACGCCTATCCAGTTGGTGGTGGGGGTCAGACCGTG
TACTTCCCCTGTCCCATAGATAAGTCTCTATCGTTCCGTTTGTACAAGCC
CTCAACCGTGTCTGATGTCTTTGGCGATTTTTATTTTTAAATATCAAGTG
TTTTTCGGGTTGAATAGTTTTCTTCTTTCTTCTTGCGCGCATTACGGGCA
TGGACTAACGCCTGAAAAAATTTATCGGCCTAACAAAAACTGTCTTTTGG
AAGCAGAGAAAAAACAGAAACCCGGAAAAATGACTAAAAACAATCGAAAA
CTAATTTTGCTTCTTATTTCCGTTGTTTCACTGGTGTGCCATGTCCAAGC
CTCGTATGTACTTCATGTATGAATGAGTCTTCCAGTGCACGGATATCCCT
GGTTGTTGCCTCTCAGCCACATTGTTACGCCTGGATTGTCAGAAAACAGG
GATGGACACTCATTTCGGGACTATTCGCCTCATTGTTTCAGCTAAAAAAC
GATTCTGGCCATCGTTTCCACGACTTCAACTCCTTCAATGTACATCTACG
CTTACCCTCCGTGCGCCGGTACCCGTTTCTTCGACCCGCCTCATTTCTGC
TATATATCTAGATGGCAAGACTCGATACCGCTGAAAAAGCAGTTTGCGTT
CTGGAAGCAAAACTAGCAGCTGCAGAGGCTAAAGCTGCTAGACAGAAAGC
CAGCGCGGAAAGAGTAAATGCAAAGGCCAATGCTGTGAGTGCCTTTCCCA
CCTCTTGCTTGGAAGCTTCAGCTGGGTCTTCTATGGGCCATGCCTCTGGA
CCACTAAAAATTGTGGATCCCGCGTCAGTAGAACTGCCCTCAGAGATAGT
TTAATTGCGTGTGAAACCTCACACAGTATCTGGTCCAGCTAAAACGGACC
ACGGGCTTTTTGTGCGTCGCCATCGCGGGCCGGTGCGCTTGGGCATTCAT
CCCGAAAGGCTTTTCAAACCAGTAGATAGCAACTCTATCTGACCCGCGTT
CCTCTACTTGTATGTCTTTCCGGATGAAGGTACCCCCCCCTGCCCGCCGC
GCCGTCCCCGTGGCAAGCGCCCCCGTGGCAAGACAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14713:67..2552-

>mRNA_L-elsbetiae_contig14713.3425.1 ID=mRNA_L-elsbetiae_contig14713.3425.1|Name=mRNA_L-elsbetiae_contig14713.3425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig14713:67..2552- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTCTTCAAGCGAACTATTCGCCAATACCTGACAAATGGTTCTTCAA
GCGAACTATTCGCCAATACCTGACAAGTATAGCGTGGAGCTGCATGACCT
CGTGCGAGGGCTCCTGCAGGCAGAACCGCTCGAGCGCCCAAGCACCGGAA
CCGTTCTGCAATGGCCACTGATCATGGACAAGGCACAGGTATAGCGTGGA
GCTGCATGACCTCGTGCGAGGGCTCCTGCAGGCAGAACCGCTCGAGCGCC
CAAGCACCGGAACCGTTCTGCAATGGCCACTGATCATGGACAAGGCACAG
ACGAGGAAACTAGCCATCTCCGAGGATGCAAGACACGCGGCGGAAACCGA
GCTGGTTGGAATGAAGGGGAATTAGACGAGGAAACTAGCCATCTCCGAGG
ATGCAAGACACGCGGCGGAAACCGAGCTGGTTGGAATGAAGGGGAATTAG
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