mRNA_L-elsbetiae_contig14711.3424.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14711.3424.1
Unique NamemRNA_L-elsbetiae_contig14711.3424.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14711.3424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14711contigL-elsbetiae_contig14711:2911..3468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size560
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.9667811-CDS-L-elsbetiae_contig14711:2910..33541622815591.9667811-CDS-L-elsbetiae_contig14711:2910..3354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14711 2911..3354 +
1691682978.5103722-CDS-L-elsbetiae_contig14711:2910..33541691682978.5103722-CDS-L-elsbetiae_contig14711:2910..3354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14711 2911..3354 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.977133-UTR-L-elsbetiae_contig14711:3354..34681622815591.977133-UTR-L-elsbetiae_contig14711:3354..3468Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14711 3355..3468 +
1691682978.5218997-UTR-L-elsbetiae_contig14711:3354..34681691682978.5218997-UTR-L-elsbetiae_contig14711:3354..3468Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14711 3355..3468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14711.3424.1prot_L-elsbetiae_contig14711.3424.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14711 2911..3354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14711.3424.1

>prot_L-elsbetiae_contig14711.3424.1 ID=prot_L-elsbetiae_contig14711.3424.1|Name=mRNA_L-elsbetiae_contig14711.3424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
GTSGEAAGRIVDDLQRQGPQHGPGGGSWSRDRAPPHRGPSRPPQAPGPGG
RHPRGRGYEDGYHPSGGRGQRRGGGYDDGYHPSGGRGQRRGGHSPAFNNS
PRHVFLTHPPVNFNGYAPESSWRNPEPRTSHLAPWLRRGLWARLLRT*
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mRNA from alignment at L-elsbetiae_contig14711:2911..3468+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14711.3424.1 ID=mRNA_L-elsbetiae_contig14711.3424.1|Name=mRNA_L-elsbetiae_contig14711.3424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig14711:2911..3468+ (Laminarionema elsbetiae ELsaHSoW15)
GGAACGAGCGGAGAAGCCGCGGGACGCATCGTCGATGACCTTCAGCGACA
GGGGCCCCAGCACGGTCCTGGGGGTGGAAGCTGGAGCCGAGACCGAGCAC
CTCCGCACCGGGGACCTTCTCGTCCACCGCAAGCGCCCGGGCCTGGCGGT
CGCCATCCTCGGGGCCGCGGATACGAGGATGGCTACCACCCCTCCGGCGG
CCGCGGTCAGCGGAGGGGGGGAGGCTACGACGACGGTTACCACCCCTCTG
GCGGCAGAGGCCAACGGAGGGGAGGTCATTCTCCGGCGTTCAACAATTCT
CCACGTCACGTTTTCCTGACGCACCCGCCCGTCAACTTCAACGGATATGC
CCCGGAAAGCAGCTGGAGGAATCCGGAGCCTCGCACCTCGCACCTCGCAC
CTTGGCTACGCCGAGGACTATGGGCACGGTTACTCCGTACTTGAGGGGGC
CGGAAACGGCGGCTACTCGGAAGACGCGAGCGGTGGGTACGGCTACGGCC
CTCCTTCCGATCGTGCATACTCGTATCTCCCCGAAAACGCCGCCGGGCCA
TCGGGAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14711:2911..3468+

>mRNA_L-elsbetiae_contig14711.3424.1 ID=mRNA_L-elsbetiae_contig14711.3424.1|Name=mRNA_L-elsbetiae_contig14711.3424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig14711:2911..3468+ (Laminarionema elsbetiae ELsaHSoW15)
GGAACGAGCGGAGAAGCCGCGGGACGCATCGTCGATGACCTTCAGCGACA
GGGGCCCCAGCACGGTCCTGGGGGTGGAAGCTGGAGCCGAGACCGAGCAC
CTCCGCACCGGGGACCTTCTCGTCCACCGCAAGCGCCCGGGCCTGGCGGT
CGCCATCCTCGGGGCCGCGGATACGAGGATGGCTACCACCCCTCCGGCGG
CCGCGGTCAGCGGAGGGGGGGAGGCTACGACGACGGTTACCACCCCTCTG
GCGGCAGAGGCCAACGGAGGGGAGGTCATTCTCCGGCGTTCAACAATTCT
CCACGTCACGTTTTCCTGACGCACCCGCCCGTCAACTTCAACGGATATGC
CCCGGAAAGCAGCTGGAGGAATCCGGAGCCTCGCACCTCGCACCTCGCAC
CTTGGCTACGCCGAGGACTATGGGCACGGTTACTCCGTACTTGAGGAACG
AGCGGAGAAGCCGCGGGACGCATCGTCGATGACCTTCAGCGACAGGGGCC
CCAGCACGGTCCTGGGGGTGGAAGCTGGAGCCGAGACCGAGCACCTCCGC
ACCGGGGACCTTCTCGTCCACCGCAAGCGCCCGGGCCTGGCGGTCGCCAT
CCTCGGGGCCGCGGATACGAGGATGGCTACCACCCCTCCGGCGGCCGCGG
TCAGCGGAGGGGGGGAGGCTACGACGACGGTTACCACCCCTCTGGCGGCA
GAGGCCAACGGAGGGGAGGTCATTCTCCGGCGTTCAACAATTCTCCACGT
CACGTTTTCCTGACGCACCCGCCCGTCAACTTCAACGGATATGCCCCGGA
AAGCAGCTGGAGGAATCCGGAGCCTCGCACCTCGCACCTCGCACCTTGGC
TACGCCGAGGACTATGGGCACGGTTACTCCGTACTTGA
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